BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: f33e1ddf9f5683002854419cb932aa12.SwissProt.fasta
22 sequences; 4,081 total letters
Query= ACIAD1039
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
Q8YVH1 Peptide deformylase 2 [Nostoc sp. (strain PCC 7120 / SAG 2... 143 1e-47
Q8EHZ2 Peptide deformylase 2 [Shewanella oneidensis (strain MR-1)] 143 2e-47
Q051Q7 Peptide deformylase [Leptospira borgpetersenii serovar Har... 125 1e-40
Q04RW4 Peptide deformylase [Leptospira borgpetersenii serovar Har... 125 1e-40
Q72S74 Peptide deformylase [Leptospira interrogans serogroup Icte... 123 1e-39
Q93LE9 Peptide deformylase [Leptospira interrogans serogroup Icte... 123 1e-39
Q7V8G6 Peptide deformylase 1 [Prochlorococcus marinus (strain MIT... 118 1e-37
B9K7G9 Peptide deformylase [Thermotoga neapolitana (strain ATCC 4... 116 3e-37
Q886I1 Peptide deformylase 2 [Pseudomonas syringae pv. tomato (st... 115 8e-37
B1I504 Peptide deformylase [Desulforudis audaxviator (strain MP10... 115 8e-37
Q7NJV3 Peptide deformylase 1 [Gloeobacter violaceus (strain ATCC ... 115 6e-36
B0SQM2 Peptide deformylase [Leptospira biflexa serovar Patoc (str... 113 7e-36
B0SHH1 Peptide deformylase [Leptospira biflexa serovar Patoc (str... 113 7e-36
P96113 Peptide deformylase [Thermotoga maritima (strain ATCC 4358... 110 1e-34
P94601 Peptide deformylase [Microchaete diplosiphon] 99.0 4e-30
O05100 Peptide deformylase 1 [Clostridium acetobutylicum (strain ... 93.6 2e-28
P94462 Peptide deformylase 1 [Bacillus subtilis (strain 168)] 92.8 5e-28
P0A6K3 Peptide deformylase [Escherichia coli (strain K12)] 89.4 1e-26
Q9FV53 Peptide deformylase 1A, chloroplastic/mitochondrial [Arabi... 90.5 4e-26
P43522 Peptide deformylase [Thermus thermophilus] 88.6 5e-26
B6RGY0 Peptide deformylase 1A, chloroplastic [Oryza sativa subsp.... 87.8 4e-25
Q45495 Peptide deformylase 2 [Bacillus subtilis (strain 168)] 85.9 4e-25
>Q8YVH1 Peptide deformylase 2 [Nostoc sp. (strain PCC 7120 / SAG
25.82 / UTEX 2576)]
Length=179
Score = 143 bits (361), Expect = 1e-47
Identities = 79/156 (51%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
+L + + G L+ AA V + +QQL+ + AT+ + NGVGIA+PQ+ S R+
Sbjct 5 LLPIIQLGNPTLRQKAAWV--ENIHDATIQQLIDDLIATVAKANGVGIASPQVAQSYRLF 62
Query 64 IVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRY 123
IVASRPNPRYP APEM+P MINP+I S E G EGCLSVP RG V R Q+I+V Y
Sbjct 63 IVASRPNPRYPHAPEMEPTAMINPKIVGHSTEIVEGWEGCLSVPGIRGLVPRHQAIEVEY 122
Query 124 FSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
G L +Q F ARI QHE DHL+GVLF+DR+
Sbjct 123 TDRYGNLQKQTLTDFVARIFQHEFDHLDGVLFIDRV 158
Score = 15.8 bits (29), Expect = 8.2
Identities = 5/14 (36%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query 77 PEMQPVVMI-NPEI 89
PE+ P++ + NP +
Sbjct 3 PELLPIIQLGNPTL 16
>Q8EHZ2 Peptide deformylase 2 [Shewanella oneidensis (strain MR-1)]
Length=181
Score = 143 bits (360), Expect = 2e-47
Identities = 79/154 (51%), Positives = 101/154 (66%), Gaps = 3/154 (2%)
Query 5 LTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMI 64
L +A GE ILK A V ++FD + L QL M A+M+E GVGIAAPQ++ + I
Sbjct 14 LPIAVVGEAILKQQAIEV--RDFD-DTLSQLASQMAASMVEAKGVGIAAPQVHSPLALFI 70
Query 65 VASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYF 124
+ASRPN RYPDAP M+P+V++NP+I S + E GEEGCLSVP QR + R Q+I VRY
Sbjct 71 MASRPNERYPDAPLMEPLVVVNPQIVLRSLQLEKGEEGCLSVPGQRFTIWRPQTIVVRYQ 130
Query 125 SLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDR 158
+L GQ GF ARI QHE DHL G+ ++R
Sbjct 131 NLAGQWQHSELTGFIARIFQHEFDHLQGITLLER 164
>Q051Q7 Peptide deformylase [Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550)]
Length=178
Score = 125 bits (315), Expect = 1e-40
Identities = 63/157 (40%), Positives = 97/157 (62%), Gaps = 0/157 (0%)
Query 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62
+V + + G+ IL+ + PV+E E ++ ++L++ M TM GVG+AAPQI + K+I
Sbjct 2 SVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 61
Query 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
++V S N RYPD P + V++NP IT + + EGCLSVP RG VER I ++
Sbjct 62 VVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRMQ 121
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ +G ++ G+ A + QHE DHL+G+L+VDRL
Sbjct 122 WMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRL 158
>Q04RW4 Peptide deformylase [Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197)]
Length=178
Score = 125 bits (315), Expect = 1e-40
Identities = 63/157 (40%), Positives = 97/157 (62%), Gaps = 0/157 (0%)
Query 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62
+V + + G+ IL+ + PV+E E ++ ++L++ M TM GVG+AAPQI + K+I
Sbjct 2 SVRKILRMGDSILRQVSIPVTENELQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 61
Query 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
++V S N RYPD P + V++NP IT + + EGCLSVP RG VER I ++
Sbjct 62 VVVGSEDNERYPDTPNVPERVILNPIITPLTKDTSGFWEGCLSVPGMRGYVERPNKIRMQ 121
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ +G ++ G+ A + QHE DHL+G+L+VDRL
Sbjct 122 WMDEKGDRFDETIDGYKAVVYQHECDHLSGILYVDRL 158
>Q72S74 Peptide deformylase [Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130)]
Length=178
Score = 123 bits (308), Expect = 1e-39
Identities = 61/157 (39%), Positives = 96/157 (61%), Gaps = 0/157 (0%)
Query 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62
+V + + G+ IL+ + PV+E E ++ ++L++ M TM GVG+AAPQI + K+I
Sbjct 2 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 61
Query 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
++V S N RYP P++ +++NP IT + + EGCLSVP RG VER I ++
Sbjct 62 VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 121
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ +G ++ G+ A + QHE DHL G+L+VDRL
Sbjct 122 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRL 158
>Q93LE9 Peptide deformylase [Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601)]
Length=178
Score = 123 bits (308), Expect = 1e-39
Identities = 61/157 (39%), Positives = 96/157 (61%), Gaps = 0/157 (0%)
Query 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62
+V + + G+ IL+ + PV+E E ++ ++L++ M TM GVG+AAPQI + K+I
Sbjct 2 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQI 61
Query 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
++V S N RYP P++ +++NP IT + + EGCLSVP RG VER I ++
Sbjct 62 VVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQ 121
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ +G ++ G+ A + QHE DHL G+L+VDRL
Sbjct 122 WMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRL 158
>Q7V8G6 Peptide deformylase 1 [Prochlorococcus marinus (strain
MIT 9313)]
Length=192
Score = 118 bits (295), Expect = 1e-37
Identities = 61/132 (46%), Positives = 82/132 (62%), Gaps = 1/132 (1%)
Query 30 EWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASR-PNPRYPDAPEMQPVVMINPE 88
E + L+K +Q T+ G G+AAPQI V R+++ PNPRYP+AP + ++INP
Sbjct 27 ELIISLIKDLQDTVKAHQGAGLAAPQIGVPLRVVLFGGGGPNPRYPEAPSIPQTLLINPV 86
Query 89 ITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQLIEQRFHGFPARIVQHEID 148
+T + E G EGCLSVP RG+V R I R + G +E GFPAR++QHE D
Sbjct 87 LTPIGSDLEDGWEGCLSVPGLRGKVSRWSRIHYRALNEDGFEVEHCLEGFPARVIQHECD 146
Query 149 HLNGVLFVDRLI 160
HL+GVLF DRL+
Sbjct 147 HLDGVLFPDRLV 158
>B9K7G9 Peptide deformylase [Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NBRC 107923 / NS-E)]
Length=164
Score = 116 bits (291), Expect = 3e-37
Identities = 61/149 (41%), Positives = 95/149 (64%), Gaps = 13/149 (9%)
Query 11 GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70
G+ +L+ A PV++ FD E L++ ++ M TM +GVG+AAPQ+ +S+R ++
Sbjct 8 GDPVLRKRAKPVTK--FD-EALKRTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNG 64
Query 71 PRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQL 130
P V +INPEI S E E+ EEGCLS P+ ++ER++ + VRY +++G+
Sbjct 65 P----------VAVINPEILEASPETEIAEEGCLSFPEIFVEIERSKRVKVRYQNVRGEF 114
Query 131 IEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+E+ G+PAR+ QHE DHLNGVL +DR+
Sbjct 115 VEEELEGYPARVFQHEFDHLNGVLIIDRI 143
>Q886I1 Peptide deformylase 2 [Pseudomonas syringae pv. tomato
(strain ATCC BAA-871 / DC3000)]
Length=179
Score = 115 bits (289), Expect = 8e-37
Identities = 67/156 (43%), Positives = 88/156 (56%), Gaps = 0/156 (0%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
+ + K G+E L A PV + F S L+ L+ M TM GVG+AAPQI + +++
Sbjct 2 IRNILKMGDERLLRIAPPVPAEMFGSSELETLIADMFETMHSVGGVGLAAPQIGIDLQLV 61
Query 64 IVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRY 123
I + RYP A + +++NP IT E G EGCLSVP RG V+R QSI
Sbjct 62 IFGFERSERYPQAEAVPQTILLNPLITPLHPGVEEGWEGCLSVPGLRGMVDRYQSIRYEG 121
Query 124 FSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
F GQ IE+ HGF AR+VQHE DHL G L+ R+
Sbjct 122 FDPDGQPIERIAHGFHARVVQHECDHLIGRLYPSRI 157
>B1I504 Peptide deformylase [Desulforudis audaxviator (strain
MP104C)]
Length=154
Score = 115 bits (287), Expect = 8e-37
Identities = 59/127 (46%), Positives = 81/127 (64%), Gaps = 9/127 (7%)
Query 32 LQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPNPRYPDAPEMQPVVMINPEITH 91
+++L + TM GVG+AAPQI VSKR+++V + PE P+V+INPEI
Sbjct 28 IERLAVNLVDTMRRSGGVGLAAPQIGVSKRVIVV---------EDPEKNPIVLINPEIVR 78
Query 92 FSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQLIEQRFHGFPARIVQHEIDHLN 151
+KE EEGCLSVP GQVER + VR ++L+G+ + GF AR QHEIDHL+
Sbjct 79 LEGDKETAEEGCLSVPGVWGQVERRMCLTVRGYNLEGKQVAYLVEGFTARAFQHEIDHLD 138
Query 152 GVLFVDR 158
G++F+DR
Sbjct 139 GIVFLDR 145
>Q7NJV3 Peptide deformylase 1 [Gloeobacter violaceus (strain ATCC
29082 / PCC 7421)]
Length=227
Score = 115 bits (287), Expect = 6e-36
Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 9/165 (5%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
V + K G+ +L+L A P++ E SE +QQL+ AM M E GVG+AAPQ+ VS +++
Sbjct 45 VYEIVKTGDPVLRLTAKPLNSDEIQSEAIQQLIAAMAERMREAPGVGLAAPQVGVSVQLV 104
Query 64 IVASRPN--PRYPDAP----EMQPV---VMINPEITHFSFEKELGEEGCLSVPDQRGQVE 114
++ RP R A E +PV V+INP ++ E + EGCLS+P +G V
Sbjct 105 VIEDRPEYIERLSGAERREREREPVPFHVLINPVLSVEGEESAVFFEGCLSIPGYQGLVA 164
Query 115 RAQSIDVRYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
RA+ + V + + R HG+ ARI+QHEIDHLNG+L VDR+
Sbjct 165 RARVVRVEALDERAAPVVIRAHGWYARILQHEIDHLNGLLCVDRM 209
>B0SQM2 Peptide deformylase [Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris)]
Length=179
Score = 113 bits (283), Expect = 7e-36
Identities = 64/157 (41%), Positives = 94/157 (60%), Gaps = 1/157 (1%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
V + K G IL+ + VSE E ++ ++L++ M TM +GVG+AAPQI V K+++
Sbjct 3 VRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLV 62
Query 64 IVASRP-NPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
+V N RYP PE+ +++NPEIT S ++ EGCLSVP RG VER I ++
Sbjct 63 VVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIRMK 122
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ ++ G+ A ++QHE DHL GVL+VDRL
Sbjct 123 WRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRL 159
>B0SHH1 Peptide deformylase [Leptospira biflexa serovar Patoc
(strain Patoc 1 / Ames)]
Length=179
Score = 113 bits (283), Expect = 7e-36
Identities = 64/157 (41%), Positives = 94/157 (60%), Gaps = 1/157 (1%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
V + K G IL+ + VSE E ++ ++L++ M TM +GVG+AAPQI V K+++
Sbjct 3 VRKILKIGNPILRQTSEDVSESEIQTKDFKKLIRDMFETMRHADGVGLAAPQIGVLKKLV 62
Query 64 IVASRP-NPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
+V N RYP PE+ +++NPEIT S ++ EGCLSVP RG VER I ++
Sbjct 63 VVGQEDDNERYPGTPEVPNQIILNPEITPLSPPRDGFWEGCLSVPGMRGYVERPNKIRMK 122
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ ++ G+ A ++QHE DHL GVL+VDRL
Sbjct 123 WRDENYVEHDEIIEGYRAIVLQHECDHLFGVLYVDRL 159
>P96113 Peptide deformylase [Thermotoga maritima (strain ATCC
43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=164
Score = 110 bits (274), Expect = 1e-34
Identities = 59/149 (40%), Positives = 92/149 (62%), Gaps = 13/149 (9%)
Query 11 GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70
G+ +L+ A PV++ FD E L++ ++ M TM +GVG+AAPQ+ +S+R ++
Sbjct 8 GDPVLRKRAKPVTK--FD-ENLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNG 64
Query 71 PRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQL 130
P V +INPEI E E+ EEGCLS P+ ++ER++ I V+Y + +G+
Sbjct 65 P----------VAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEY 114
Query 131 IEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+E+ G+ AR+ QHE DHLNGVL +DR+
Sbjct 115 VEEELEGYAARVFQHEFDHLNGVLIIDRI 143
>P94601 Peptide deformylase [Microchaete diplosiphon]
Length=187
Score = 99.0 bits (245), Expect = 4e-30
Identities = 52/149 (35%), Positives = 91/149 (61%), Gaps = 8/149 (5%)
Query 11 GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70
G+ +L+ A +++ + + L+QL++ M TM ++G+G+AAPQ+ + K+++++ P
Sbjct 23 GDRVLRQPAKRIAKVDDE---LRQLIRDMLQTMYSKDGIGLAAPQVGIHKQLIVIDLEP- 78
Query 71 PRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRYFSLQGQL 130
D P P+V+INP I S E + +EGCLS+P+ V+R + +++ Y G+
Sbjct 79 ----DNPANPPLVLINPTIKQVSKEICVAQEGCLSIPNVYMDVKRPEVVEIAYKDENGRP 134
Query 131 IEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ AR +QHE+DHLNGV+FVDR+
Sbjct 135 KTLKATDLLARCIQHEMDHLNGVVFVDRV 163
>O05100 Peptide deformylase 1 [Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)]
Length=150
Score = 93.6 bits (231), Expect = 2e-28
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 14/156 (9%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
+ ++ K G+E+L+ + V + + + L L+ M TM +GVG+AAPQ+ + KR++
Sbjct 3 IRSIRKYGDELLRKKSRKVEKID---KRLLTLIDDMFETMYNADGVGLAAPQVGILKRLV 59
Query 64 IVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRY 123
++ D E PVV+INPEI S K + EGCLS+P+++G+VER + +
Sbjct 60 VI---------DVGE-GPVVLINPEILETS-GKAVDVEGCLSIPERQGEVERPTYVKAKA 108
Query 124 FSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
+ +G+ I AR + HE DHLNGVLFVD+L
Sbjct 109 LNEKGEEIVIEAEDLFARAICHETDHLNGVLFVDKL 144
>P94462 Peptide deformylase 1 [Bacillus subtilis (strain 168)]
Length=160
Score = 92.8 bits (229), Expect = 5e-28
Identities = 63/156 (40%), Positives = 87/156 (56%), Gaps = 12/156 (8%)
Query 4 VLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIM 63
V V E+L+ A V+ FD + L++L+ M TMLE +GVG+AAPQI + KR
Sbjct 3 VKKVVTHPAEVLETPAETVTV--FDKK-LKKLLDDMYDTMLEMDGVGLAAPQIGILKRAA 59
Query 64 IVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVRY 123
+V + + ++NPEI S E + G EGCLS P+ G V RA + VR
Sbjct 60 VVEI--------GDDRGRIDLVNPEILEKSGE-QTGIEGCLSFPNVYGDVTRADYVKVRA 110
Query 124 FSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
F+ QG+ GF AR VQHE+DHL+GVLF ++
Sbjct 111 FNRQGKPFILEARGFLARAVQHEMDHLDGVLFTSKI 146
>P0A6K3 Peptide deformylase [Escherichia coli (strain K12)]
Length=169
Score = 89.4 bits (220), Expect = 1e-26
Identities = 57/157 (36%), Positives = 86/157 (55%), Gaps = 11/157 (7%)
Query 3 TVLTVAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRI 62
+VL V +E L+ A PV E + +Q++V M TM G+G+AA Q+ + +RI
Sbjct 2 SVLQVLHIPDERLRKVAKPVEEVNAE---IQRIVDDMFETMYAEEGIGLAATQVDIHQRI 58
Query 63 MIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQSIDVR 122
+++ N + +V+INPE+ S E + EEGCLS+P+QR V RA+ + +R
Sbjct 59 IVIDVSEN-------RDERLVLINPELLEKSGETGI-EEGCLSIPEQRALVPRAEKVKIR 110
Query 123 YFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
G+ E G A +QHE+DHL G LF+D L
Sbjct 111 ALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYL 147
>Q9FV53 Peptide deformylase 1A, chloroplastic/mitochondrial [Arabidopsis
thaliana]
Length=269
Score = 90.5 bits (223), Expect = 4e-26
Identities = 58/163 (36%), Positives = 85/163 (52%), Gaps = 9/163 (6%)
Query 7 VAKRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIV- 65
+ G+ +L A V E SE +Q+++ M M GVG+AAPQI V RI+++
Sbjct 83 IVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVLE 142
Query 66 --------ASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQRGQVERAQ 117
A + + +VM+NP + S +K L EGCLSV R VER
Sbjct 143 DTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERYL 202
Query 118 SIDVRYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRLI 160
+ V + QG+ IE G+ ARI+QHE DHL+G L+VD+++
Sbjct 203 EVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMV 245
>P43522 Peptide deformylase [Thermus thermophilus]
Length=192
Score = 88.6 bits (218), Expect = 5e-26
Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query 11 GEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYVSKRIMIVASRPN 70
G+ +L+ A PV D +++L + M TM E GVG+AAPQI +S+R+ + +
Sbjct 9 GDPVLRRKARPVE----DFSGIKRLAEDMLETMFEAKGVGLAAPQIGLSQRLFVAVEYAD 64
Query 71 PRYPDAPEMQPV--------VMINPEITHFSFEKELGEEGCLSVPDQRGQ-VERAQSIDV 121
P+ E +P+ V+ NP IT+ E G EGCLS+P + V RA+ I V
Sbjct 65 E--PEGEEERPLRELVRRVYVVANPVITYREGLVE-GTEGCLSLPGLYSEEVPRAERIRV 121
Query 122 RYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
Y +G+ G+ AR+ QHEIDHL+G+LF +RL
Sbjct 122 EYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERL 159
>B6RGY0 Peptide deformylase 1A, chloroplastic [Oryza sativa subsp.
japonica]
Length=260
Score = 87.8 bits (216), Expect = 4e-25
Identities = 59/171 (35%), Positives = 88/171 (51%), Gaps = 13/171 (8%)
Query 3 TVLTVA----KRGEEILKLNAAPVSEQEFDSEWLQQLVKAMQATMLERNGVGIAAPQIYV 58
T +TV K G+ +L A V+ + SE +Q ++ M A M + GVG+AAPQI V
Sbjct 66 TAMTVTPGTVKAGDPVLHEPAQDVAPGDIPSEKVQGVIDRMVAVMRKAPGVGLAAPQIGV 125
Query 59 SKRIMIV---------ASRPNPRYPDAPEMQPVVMINPEITHFSFEKELGEEGCLSVPDQ 109
+I+++ A + + D +V+INP++ S L EGCLSV
Sbjct 126 PLKIIVLEDTQEYISYAPKKDIEAQDRRPFDLLVIINPKLKTTSKRTALFFEGCLSVDGY 185
Query 110 RGQVERAQSIDVRYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRLI 160
R VER ++V G+ I+ G+ ARI+QHE DHL G L+VD ++
Sbjct 186 RALVERHLDVEVSGLDRNGRPIKVEASGWQARILQHECDHLEGTLYVDTMV 236
>Q45495 Peptide deformylase 2 [Bacillus subtilis (strain 168)]
Length=184
Score = 85.9 bits (211), Expect = 4e-25
Identities = 63/172 (37%), Positives = 88/172 (51%), Gaps = 18/172 (10%)
Query 1 MSTVLTVAKRGEEILKLNAAPVSEQEFDSEWLQ-----QLVKAMQATMLE-----RNGVG 50
M T+ + + G L+ A PV D+E Q + VK Q L R GVG
Sbjct 1 MITMENIVRDGHPALRETAEPVELPPTDAEKQQLADMIEFVKNSQNPELAEKYKLRPGVG 60
Query 51 IAAPQIYVSKRIMIVASRPNPRYPDAPEMQPVVMINPEITHFSFEKEL--GEEGCLSVPD 108
+AAPQI + KR++ V + + ++ + NP+I S EK EGCLSV +
Sbjct 61 LAAPQINIKKRMIAVHAEDA-----SGKLYSYALFNPKIVSHSVEKSYLTSGEGCLSVDE 115
Query 109 Q-RGQVERAQSIDVRYFSLQGQLIEQRFHGFPARIVQHEIDHLNGVLFVDRL 159
G V R I V+ +L+G+ I+ R GFPA + QHEIDHLNGV+F D +
Sbjct 116 AIPGYVPRYARIRVKGTTLEGENIDIRLKGFPAIVFQHEIDHLNGVMFYDHI 167
Lambda K H a alpha
0.324 0.139 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 399135
Database: f33e1ddf9f5683002854419cb932aa12.SwissProt.fasta
Posted date: May 19, 2024 9:19 PM
Number of letters in database: 4,081
Number of sequences in database: 22
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
