BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 06036d81145850cc9af7c94becc08330.SwissProt.fasta
26 sequences; 1,731 total letters
Query= ACIAD1044
Length=98
Score E
Sequences producing significant alignments: (Bits) Value
Q816H3 Cold shock-like protein CspD [Bacillus cereus (strain ATCC... 35.0 9e-08
Q81K90 Cold shock-like protein CspD [Bacillus anthracis] 35.0 9e-08
P32081 Cold shock protein CspB [Bacillus subtilis (strain 168)] 34.7 1e-07
P0DA49 Major cold shock protein [Streptococcus pyogenes serotype ... 34.7 1e-07
P0A361 Major cold shock protein [Streptococcus pyogenes serotype ... 34.7 1e-07
Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype ... 34.7 1e-07
P0DA48 Major cold shock protein [Streptococcus pyogenes serotype ... 34.7 1e-07
P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype M1] 34.7 1e-07
Q45099 Cold shock-like protein CspD [Bacillus cereus] 34.3 2e-07
Q6GH06 Cold shock protein CspA [Staphylococcus aureus (strain MRS... 34.3 2e-07
Q7A5P3 Cold shock protein CspA [Staphylococcus aureus (strain N315)] 34.3 2e-07
Q7A2R8 Cold shock protein CspA [Staphylococcus aureus (strain Mu5... 34.3 2e-07
Q5HG18 Cold shock protein CspA [Staphylococcus aureus (strain COL)] 34.3 2e-07
Q2FYN2 Cold shock protein CspA [Staphylococcus aureus (strain NCT... 34.3 2e-07
Q68W69 Cold shock-like protein CspA [Rickettsia typhi (strain ATC... 34.3 2e-07
Q92GV1 Cold shock-like protein CspA [Rickettsia conorii (strain A... 34.3 2e-07
P62171 Cold shock-like protein CspC [Bacillus cereus (strain ATCC... 32.7 7e-07
P62169 Cold shock-like protein CspC [Bacillus anthracis] 32.7 7e-07
P62170 Cold shock-like protein CspC [Bacillus cereus] 32.7 7e-07
P55390 Probable cold shock protein y4cH [Sinorhizobium fredii (st... 32.7 7e-07
P51777 Cold shock protein CspD [Bacillus subtilis (strain 168)] 32.3 1e-06
O54310 Cold shock-like protein [Thermotoga maritima (strain ATCC ... 32.0 1e-06
P54584 Cold shock protein [Arthrobacter globiformis] 31.6 2e-06
P41016 Cold shock protein CspB [Bacillus caldolyticus] 30.8 4e-06
P71478 Cold shock protein 1 [Lactiplantibacillus plantarum (strai... 30.8 4e-06
P96349 Cold shock protein 2 [Lactiplantibacillus plantarum (strai... 30.8 4e-06
>Q816H3 Cold shock-like protein CspD [Bacillus cereus (strain
ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB
9373 / NCTC 2599 / NRRL B-3711)]
Length=66
Score = 35.0 bits (79), Expect = 9e-08
Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 16/69 (23%)
Query 8 GKIKQYDATKGFGFI---GGLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNG 58
GK+K +++ KGFGFI GG DVF H S LEEG + V F +VE N
Sbjct 4 GKVKWFNSEKGFGFIEVEGG--DDVFVHFSAIQGDGFKTLEEG-----QEVSFEIVEGNR 56
Query 59 KFKAVKIQR 67
+A + +
Sbjct 57 GPQAANVTK 65
>Q81K90 Cold shock-like protein CspD [Bacillus anthracis]
Length=66
Score = 35.0 bits (79), Expect = 9e-08
Identities = 26/69 (38%), Positives = 35/69 (51%), Gaps = 16/69 (23%)
Query 8 GKIKQYDATKGFGFI---GGLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNG 58
GK+K +++ KGFGFI GG DVF H S LEEG + V F +VE N
Sbjct 4 GKVKWFNSEKGFGFIEVEGG--DDVFVHFSAIQGDGFKTLEEG-----QEVSFEIVEGNR 56
Query 59 KFKAVKIQR 67
+A + +
Sbjct 57 GPQAANVTK 65
>P32081 Cold shock protein CspB [Bacillus subtilis (strain 168)]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 25/68 (37%), Positives = 35/68 (51%), Gaps = 12/68 (18%)
Query 7 QGKIKQYDATKGFGFIGGLEQ-DVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
+GK+K +++ KGFGFI Q DVF H S LEEG + V F +VE N
Sbjct 3 EGKVKWFNSEKGFGFIEVEGQDDVFVHFSAIQGEGFKTLEEG-----QAVSFEIVEGNRG 57
Query 60 FKAVKIQR 67
+A + +
Sbjct 58 PQAANVTK 65
>P0DA49 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain SSI-1)]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI QDVF H S LEEG ++V F V E
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEG-----QKVAFDVEEGQRG 57
Query 60 FKAVKIQRV 68
+AV I ++
Sbjct 58 PQAVNITKL 66
>P0A361 Major cold shock protein [Streptococcus pyogenes serotype
M18 (strain MGAS8232)]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI QDVF H S LEEG ++V F V E
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEG-----QKVAFDVEEGQRG 57
Query 60 FKAVKIQRV 68
+AV I ++
Sbjct 58 PQAVNITKL 66
>Q5X9L4 Major cold shock protein [Streptococcus pyogenes serotype
M6 (strain ATCC BAA-946 / MGAS10394)]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI QDVF H S LEEG ++V F V E
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTSGFKTLEEG-----QKVAFDVEEGQRG 57
Query 60 FKAVKIQRV 68
+AV I ++
Sbjct 58 PQAVNITKL 66
>P0DA48 Major cold shock protein [Streptococcus pyogenes serotype
M3 (strain ATCC BAA-595 / MGAS315)]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI QDVF H S LEEG ++V F V E
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEG-----QKVAFDVEEGQRG 57
Query 60 FKAVKIQRV 68
+AV I ++
Sbjct 58 PQAVNITKL 66
>P0C0F1 Major cold shock protein [Streptococcus pyogenes serotype
M1]
Length=67
Score = 34.7 bits (78), Expect = 1e-07
Identities = 27/69 (39%), Positives = 35/69 (51%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI QDVF H S LEEG ++V F V E
Sbjct 3 QGTVKWFNAEKGFGFISTENGQDVFAHFSAIQTNGFKTLEEG-----QKVAFDVEEGQRG 57
Query 60 FKAVKIQRV 68
+AV I ++
Sbjct 58 PQAVNITKL 66
>Q45099 Cold shock-like protein CspD [Bacillus cereus]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 25/69 (36%), Positives = 35/69 (51%), Gaps = 16/69 (23%)
Query 8 GKIKQYDATKGFGFI---GGLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNG 58
GK+K ++ KGFGFI GG +DVF H S LEEG + V F +V+ N
Sbjct 4 GKVKWFNGEKGFGFIEVEGG--EDVFVHFSAIQGDGFKTLEEG-----QEVSFEIVDGNR 56
Query 59 KFKAVKIQR 67
+A + +
Sbjct 57 GPQAANVTK 65
>Q6GH06 Cold shock protein CspA [Staphylococcus aureus (strain
MRSA252)]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIG-GLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI E DVF H S LEEG + V+F VVE +
Sbjct 3 QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG-----QAVEFEVVEGDRG 57
Query 60 FKAVKIQRV 68
+A + ++
Sbjct 58 PQAANVVKL 66
>Q7A5P3 Cold shock protein CspA [Staphylococcus aureus (strain
N315)]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIG-GLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI E DVF H S LEEG + V+F VVE +
Sbjct 3 QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG-----QAVEFEVVEGDRG 57
Query 60 FKAVKIQRV 68
+A + ++
Sbjct 58 PQAANVVKL 66
>Q7A2R8 Cold shock protein CspA [Staphylococcus aureus (strain
Mu50 / ATCC 700699)]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIG-GLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI E DVF H S LEEG + V+F VVE +
Sbjct 3 QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG-----QAVEFEVVEGDRG 57
Query 60 FKAVKIQRV 68
+A + ++
Sbjct 58 PQAANVVKL 66
>Q5HG18 Cold shock protein CspA [Staphylococcus aureus (strain
COL)]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIG-GLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI E DVF H S LEEG + V+F VVE +
Sbjct 3 QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG-----QAVEFEVVEGDRG 57
Query 60 FKAVKIQRV 68
+A + ++
Sbjct 58 PQAANVVKL 66
>Q2FYN2 Cold shock protein CspA [Staphylococcus aureus (strain
NCTC 8325 / PS 47)]
Length=66
Score = 34.3 bits (77), Expect = 2e-07
Identities = 26/69 (38%), Positives = 36/69 (52%), Gaps = 12/69 (17%)
Query 7 QGKIKQYDATKGFGFIG-GLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENNGK 59
QG +K ++A KGFGFI E DVF H S LEEG + V+F VVE +
Sbjct 3 QGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEG-----QAVEFEVVEGDRG 57
Query 60 FKAVKIQRV 68
+A + ++
Sbjct 58 PQAANVVKL 66
>Q68W69 Cold shock-like protein CspA [Rickettsia typhi (strain
ATCC VR-144 / Wilmington)]
Length=70
Score = 34.3 bits (77), Expect = 2e-07
Identities = 24/64 (38%), Positives = 33/64 (52%), Gaps = 7/64 (11%)
Query 8 GKIKQYDATKGFGFI----GGLEQDVFFHISDFPLEE-GEPKRNERVKFMVVENNGKFKA 62
GK+K Y++TK FGFI GG +DVF H S K + V F + E GK A
Sbjct 7 GKVKWYNSTKNFGFIEQDNGG--KDVFVHKSAIEAAGLHSLKERQEVIFDIEEKQGKAYA 64
Query 63 VKIQ 66
+ ++
Sbjct 65 INLR 68
>Q92GV1 Cold shock-like protein CspA [Rickettsia conorii (strain
ATCC VR-613 / Malish 7)]
Length=70
Score = 34.3 bits (77), Expect = 2e-07
Identities = 28/69 (41%), Positives = 36/69 (52%), Gaps = 17/69 (25%)
Query 8 GKIKQYDATKGFGFI----GGLEQDVFFHISD------FPLEEGEPKRNERVKFMVVENN 57
GK+K Y++TK FGFI GG +DVF H S LEEG+ V F + E
Sbjct 7 GKVKWYNSTKNFGFIEQDNGG--KDVFVHKSAVDAAGLHSLEEGQD-----VIFDLEEKQ 59
Query 58 GKFKAVKIQ 66
GK AV ++
Sbjct 60 GKAYAVNLR 68
>P62171 Cold shock-like protein CspC [Bacillus cereus (strain
ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB
9373 / NCTC 2599 / NRRL B-3711)]
Length=65
Score = 32.7 bits (73), Expect = 7e-07
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 12/56 (21%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVE 55
QG++K ++A KGFGFI + DVF H S LEEG ++V+F +V+
Sbjct 2 QGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEG-----QQVEFDIVD 52
>P62169 Cold shock-like protein CspC [Bacillus anthracis]
Length=65
Score = 32.7 bits (73), Expect = 7e-07
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 12/56 (21%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVE 55
QG++K ++A KGFGFI + DVF H S LEEG ++V+F +V+
Sbjct 2 QGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEG-----QQVEFDIVD 52
>P62170 Cold shock-like protein CspC [Bacillus cereus]
Length=65
Score = 32.7 bits (73), Expect = 7e-07
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 12/56 (21%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGEPKRNERVKFMVVE 55
QG++K ++A KGFGFI + DVF H S LEEG ++V+F +V+
Sbjct 2 QGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEG-----QQVEFDIVD 52
>P55390 Probable cold shock protein y4cH [Sinorhizobium fredii
(strain NBRC 101917 / NGR234)]
Length=69
Score = 32.7 bits (73), Expect = 7e-07
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 9/66 (14%)
Query 8 GKIKQYDATKGFGFI--GGLEQDVFFHISDFPLEEG---EPKRNERVKFMVVEN--NGKF 60
G +K ++ATKGFGFI DVF HIS +E E K +++ + +V++ +GK
Sbjct 5 GTVKWFNATKGFGFIQPDDGSADVFVHIS--AVERAGLRELKDGQKISYELVKDRKSGKM 62
Query 61 KAVKIQ 66
A +Q
Sbjct 63 SADNLQ 68
>P51777 Cold shock protein CspD [Bacillus subtilis (strain 168)]
Length=66
Score = 32.3 bits (72), Expect = 1e-06
Identities = 24/59 (41%), Positives = 30/59 (51%), Gaps = 16/59 (27%)
Query 8 GKIKQYDATKGFGFI---GGLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENN 57
GK+K ++ KGFGFI GG DVF H + LEEG + V F +VE N
Sbjct 4 GKVKWFNNEKGFGFIEVEGG--DDVFVHFTAIEGDGYKSLEEG-----QEVSFEIVEGN 55
>O54310 Cold shock-like protein [Thermotoga maritima (strain ATCC
43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)]
Length=66
Score = 32.0 bits (71), Expect = 1e-06
Identities = 22/64 (34%), Positives = 35/64 (55%), Gaps = 2/64 (3%)
Query 7 QGKIKQYDATKGFGFIGGLE-QDVFFHISDFPLEEGEP-KRNERVKFMVVENNGKFKAVK 64
+GK+K +D+ KG+GFI E DVF H S +E + K + V+F + E +A
Sbjct 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQAAH 61
Query 65 IQRV 68
++ V
Sbjct 62 VKVV 65
>P54584 Cold shock protein [Arthrobacter globiformis]
Length=67
Score = 31.6 bits (70), Expect = 2e-06
Identities = 21/52 (40%), Positives = 30/52 (58%), Gaps = 7/52 (13%)
Query 7 QGKIKQYDATKGFGFI--GGLEQDVFFHISDFPLEEGEPK---RNERVKFMV 53
QG +K ++A KGFGFI + DVF H S+ ++ G K N RV+F +
Sbjct 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSE--IQTGGFKTLDENARVQFEI 52
>P41016 Cold shock protein CspB [Bacillus caldolyticus]
Length=66
Score = 30.8 bits (68), Expect = 4e-06
Identities = 23/71 (32%), Positives = 36/71 (51%), Gaps = 16/71 (23%)
Query 7 QGKIKQYDATKGFGFI---GGLEQDVFFHISDF------PLEEGEPKRNERVKFMVVENN 57
+GK+K ++ KG+GFI GG DVF H + LEEG + V F +V+ N
Sbjct 3 RGKVKWFNNEKGYGFIEVEGG--SDVFVHFTAIQGEGFKTLEEG-----QEVSFEIVQGN 55
Query 58 GKFKAVKIQRV 68
+A + ++
Sbjct 56 RGPQAANVVKL 66
>P71478 Cold shock protein 1 [Lactiplantibacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1)]
Length=66
Score = 30.8 bits (68), Expect = 4e-06
Identities = 18/42 (43%), Positives = 24/42 (57%), Gaps = 7/42 (17%)
Query 8 GKIKQYDATKGFGFIGGLE-QDVFFHISDF------PLEEGE 42
G +K ++A KG+GFI G + DVF H S LEEG+
Sbjct 4 GTVKWFNADKGYGFITGEDGNDVFVHFSAIQTDGFKTLEEGQ 45
>P96349 Cold shock protein 2 [Lactiplantibacillus plantarum (strain
ATCC BAA-793 / NCIMB 8826 / WCFS1)]
Length=66
Score = 30.8 bits (68), Expect = 4e-06
Identities = 15/28 (54%), Positives = 19/28 (68%), Gaps = 1/28 (4%)
Query 8 GKIKQYDATKGFGFIGGLE-QDVFFHIS 34
G +K ++A KGFGFI G + DVF H S
Sbjct 4 GTVKWFNADKGFGFITGEDGTDVFVHFS 31
Lambda K H a alpha
0.322 0.137 0.382 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 75960
Database: 06036d81145850cc9af7c94becc08330.SwissProt.fasta
Posted date: May 20, 2024 5:28 AM
Number of letters in database: 1,731
Number of sequences in database: 26
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
