BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d36080328cff0b6b420f9c9f1d0adb02.SwissProt.fasta
           1 sequences; 236 total letters



Query= ACIAD1085

Length=159
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P40710 Lipoprotein NlpE [Escherichia coli (strain K12)]               65.1    4e-18


>P40710 Lipoprotein NlpE [Escherichia coli (strain K12)]
Length=236

 Score = 65.1 bits (157),  Expect = 4e-18
 Identities = 32/86 (37%), Positives = 49/86 (57%), Gaps = 2/86 (2%)

Query  62   YTGKLPCADCEGIQTALELKNDKTYELKETYMGGKSDGKPFETQGTFTFDQKNPSMIVLD  121
            + G LPCADCEGI+T+L L+ D T+ + E Y+G + +   F + GT+   +    +++ D
Sbjct  45   WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWA--RTADKLVLTD  102

Query  122  QKSENRKFFVAENTLTALDMEGNKIE  147
             K E   +    + L  LD EGN IE
Sbjct  103  SKGEKSYYRAKGDALEMLDREGNPIE  128



Lambda      K        H        a         alpha
   0.314    0.128    0.362    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 30024


  Database: d36080328cff0b6b420f9c9f1d0adb02.SwissProt.fasta
    Posted date:  May 30, 2024  3:56 PM
  Number of letters in database: 236
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40