BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 188f51aba744b1ad3cedd69e0bb3f291.SwissProt.fasta
           2 sequences; 585 total letters



Query= ACIAD1096

Length=191
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P27650 Protein HupE [Rhizobium leguminosarum bv. viciae]              67.8    1e-18
P23910 Putative transporter AraJ [Escherichia coli (strain K12)]      33.5    3e-06


>P27650 Protein HupE [Rhizobium leguminosarum bv. viciae]
Length=191

 Score = 67.8 bits (164),  Expect = 1e-18
 Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 16/186 (9%)

Query  10   LATLSFIPAIAMAHPGHDQTHIGFWEGLIHPFTGLDHLTMAIGFGVLLWTVAKQWKILGI  69
            LA L+ +P+IA AH G      G   GL HPF+GLDH+   +  G   W      K + I
Sbjct  10   LAALA-LPSIAHAHVGLHAD--GTLAGLNHPFSGLDHILAMVAVG--FWASTLGGKAVWI  64

Query  70   IGLSLSLIF--GFVVGANGV-IPATVAEYGIVASLIVLAVALWSK-SYRVLPFAASLMAS  125
            +  +  ++   G V+G  G+ +P       +  +++ L VA   K    V      + A 
Sbjct  65   VPSAFVIVMAGGGVLGIEGIALPMVETAIALTVAMLGLLVAFEVKIPTPVAAIVVGICAL  124

Query  126  FHGMAHGVELAPQGHVIGLVAGMVCGMSVLYSSGLGLGYL-------IQHYVPYGRKVLS  178
            FHG  HG+EL    +  G VAG +    +L+  G+GL  L       +   V  G   L+
Sbjct  125  FHGHVHGIELPTMSNATGYVAGFLAATVILHVLGIGLASLRFGKAGQVVARVAGGAVALA  184

Query  179  GIAAIV  184
            G A +V
Sbjct  185  GAALLV  190


>P23910 Putative transporter AraJ [Escherichia coli (strain K12)]
Length=394

 Score = 33.5 bits (75),  Expect = 3e-06
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 16/106 (15%)

Query  79   GFVVGANGVIPATVAEYGI------VASLIVLAVALW--SKSYRVLPFAASLMASFHGMA  130
            G VVGA  +I    + Y +      + +L V+  A++  S SY +L     +    HG  
Sbjct  50   GVVVGAP-IIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAF  108

Query  131  HGV------ELAPQGHVIGLVAGMVCGMSVLYSSGLGLG-YLIQHY  169
             GV      ++   G V   VAGMV GM+V    G+ LG YL Q +
Sbjct  109  FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF  154


 Score = 21.2 bits (43),  Expect = 0.030
 Identities = 16/56 (29%), Positives = 25/56 (45%), Gaps = 2/56 (4%)

Query  55   VLLWTVAKQWKILGIIGLSLSLIFGFVVGANGVIPATVAEYGIVASLIVLAVALWS  110
            +LL   AK  ++LG  G  ++   G  VGA       +   G+  + + L  AL S
Sbjct  312  ILLLQNAKGGELLGAAGGQIAFNLGSAVGA--YCGGMMLTLGLAYNYVALPAALLS  365


 Score = 15.0 bits (27),  Expect = 2.8
 Identities = 5/7 (71%), Positives = 6/7 (86%), Gaps = 0/7 (0%)

Query  75   SLIFGFV  81
            SLIF F+
Sbjct  292  SLIFAFI  298



Lambda      K        H        a         alpha
   0.331    0.145    0.455    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 86227


  Database: 188f51aba744b1ad3cedd69e0bb3f291.SwissProt.fasta
    Posted date:  Jun 1, 2024  2:10 AM
  Number of letters in database: 585
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40