Comparative Genomics

ACIAD1125 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: a0805ef4ff37e51f8d647303b3ee5c1a.SwissProt.fasta
           12 sequences; 2,219 total letters



Query= ACIAD1125

Length=211
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q3K4Y2 UPF0149 protein Pfl01_5435 [Pseudomonas fluorescens (strai...  87.8    2e-25
Q4K406 UPF0149 protein PFL_5969 [Pseudomonas fluorescens (strain ...  87.0    4e-25
C1DJ20 UPF0149 protein Avin_47340 [Azotobacter vinelandii (strain...  84.7    3e-24
A4XP32 UPF0149 protein Pmen_0324 [Pseudomonas mendocina (strain y...  83.2    1e-23
A5WAR6 UPF0149 protein Pput_5108 [Pseudomonas putida (strain ATCC...  83.2    1e-23
Q88CI0 UPF0149 protein PP_5201 [Pseudomonas putida (strain ATCC 4...  83.2    1e-23
B0KP86 UPF0149 protein PputGB1_5261 [Pseudomonas putida (strain G...  82.0    3e-23
Q48PR0 UPF0149 protein PSPPH_0305 [Pseudomonas savastanoi pv. pha...  81.6    4e-23
B1JEZ1 UPF0149 protein PputW619_5026 [Pseudomonas putida (strain ...  80.9    8e-23
Q1I350 UPF0149 protein PSEEN5316 [Pseudomonas entomophila (strain...  80.1    1e-22
Q87US2 UPF0149 protein PSPTO_5224 [Pseudomonas syringae pv. tomat...  80.1    1e-22
P0A8C4 UPF0149 protein YgfB [Escherichia coli (strain K12)]           73.9    4e-20


>Q3K4Y2 UPF0149 protein Pfl01_5435 [Pseudomonas fluorescens (strain 
Pf0-1)]
Length=186

 Score = 87.8 bits (216),  Expect = 2e-25
 Identities = 56/155 (36%), Positives = 82/155 (53%), Gaps = 2/155 (1%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C     + +EWL   A L      D   + L    E V   L+ D++
Sbjct  23   SPAELHGLLLGRSCAGAGFNAEEWLIDAAELLESEPQDNVRNALIGLQEMVKSELTGDDV  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASGHIRSNEMELIEHLQDVAAV-EFED  141
              + +LP+D+  L ER  AL +WC G + GFGL          E  E LQD+AA+ + +D
Sbjct  83   TVVLLLPNDDAPLAERAAALGEWCQGFLTGFGLNCRDSSMLSTEATEVLQDLAAISQVQD  142

Query  142  S-DDDEDGEISYQELYEFVRLIPVSLSIGRKKIAV  175
            + ++ EDGE  Y E+ E++R+ P+ L    KK  V
Sbjct  143  ALEESEDGESDYMEVMEYLRVAPLLLFSETKKADV  177


>Q4K406 UPF0149 protein PFL_5969 [Pseudomonas fluorescens (strain 
ATCC BAA-477 / NRRL B-23932 / Pf-5)]
Length=185

 Score = 87.0 bits (214),  Expect = 4e-25
 Identities = 54/146 (37%), Positives = 78/146 (53%), Gaps = 2/146 (1%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C       D WL   A L      D   S L    E V   L+ D++
Sbjct  23   SPAELHGLLLGRSCAGAGFEVDGWLVDAAELLEGEPQDNVRSALIGLQEMVKGELTSDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASGHIRSNEMELIEHLQDVAAV-EFED  141
              + +LP D+  L ER  AL  WC G + GFGL S    +  +E  E LQD+AA+ + +D
Sbjct  83   TVVLLLPSDDAPLAERAAALGQWCQGFLAGFGLNSRDSSALSVEATEVLQDLAAIAQVQD  142

Query  142  S-DDDEDGEISYQELYEFVRLIPVSL  166
            + ++ +DGE  Y E+ E++R+ P+ L
Sbjct  143  ALEESDDGESDYMEVMEYLRVAPLLL  168


>C1DJ20 UPF0149 protein Avin_47340 [Azotobacter vinelandii (strain 
DJ / ATCC BAA-1303)]
Length=184

 Score = 84.7 bits (208),  Expect = 3e-24
 Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHG + G  C       D WL   A L    + D     L    E V   L+  E+
Sbjct  23   SPAELHGQLLGRSCAGAGFEVDAWLADAADLLGGQIPDNVRQALIGLQEMVKGELTGGEV  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASGHIRSNEMELIEHLQDVAAVEFEDS  142
              + +LP DE  L ER  AL  WC G + GFGLA+G  R    E +E LQD+AA+    S
Sbjct  83   AVVLLLPSDEAPLAERAAALGQWCQGFLGGFGLAAGD-RPLSAEAMEVLQDLAAISQVQS  141

Query  143  --DDDEDGEISYQELYEFVRLIPVSL  166
              +D E+GE +Y E+ E++R+ P+ L
Sbjct  142  ALEDSEEGEGAYMEVMEYLRVAPLLL  167


>A4XP32 UPF0149 protein Pmen_0324 [Pseudomonas mendocina (strain 
ymp)]
Length=184

 Score = 83.2 bits (204),  Expect = 1e-23
 Identities = 51/146 (35%), Positives = 76/146 (52%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C       D WL   A L      D+    L    E V   L  +++
Sbjct  23   SPAELHGLLLGRSCAGAGFDADAWLLDAADLLGGEPQDSVRQALIGLQEMVKGELCSEDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLAS--GHIRSNEMELIEHLQDVAAVEFE  140
              + +LPDDE  L +R  AL  WC G + GFGL +  G + +  ME+++ L  +A V+  
Sbjct  83   AVVLLLPDDETPLAQRAVALGQWCQGFLGGFGLTARDGALSAEAMEVLQDLSAIAQVQ-S  141

Query  141  DSDDDEDGEISYQELYEFVRLIPVSL  166
              ++ EDGE  Y E+ E++R+ P+ L
Sbjct  142  ALEESEDGENDYMEVMEYLRVAPLLL  167


>A5WAR6 UPF0149 protein Pput_5108 [Pseudomonas putida (strain 
ATCC 700007 / DSM 6899 / BCRC 17059 / F1)]
Length=184

 Score = 83.2 bits (204),  Expect = 1e-23
 Identities = 54/147 (37%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            +P+ELHGL+ G  C       D WL   A L      D+  + L    E V   L+ D++
Sbjct  23   TPAELHGLLIGRSCAGAGFDADAWLADAAQLLEIEPGDSVRNALVGLQEMVKGELTSDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGL-ASGHIRSNEMELIEHLQDVAAVE--F  139
              + +LP D+  L +R  AL  WC G V GFGL A G   S+E +  E LQD+ A+    
Sbjct  83   AIVLLLPTDDAALSDRATALGQWCQGFVTGFGLNAGGKDLSDEAK--EVLQDLVAISQVQ  140

Query  140  EDSDDDEDGEISYQELYEFVRLIPVSL  166
            E  ++ EDGE  Y E+ E++R+ P+ L
Sbjct  141  EALEESEDGESDYMEVMEYLRVAPLLL  167


>Q88CI0 UPF0149 protein PP_5201 [Pseudomonas putida (strain ATCC 
47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=184

 Score = 83.2 bits (204),  Expect = 1e-23
 Identities = 54/147 (37%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            +P+ELHGL+ G  C       D WL   A L      D+  + L    E V   L+ D++
Sbjct  23   TPAELHGLLIGRSCAGAGFDADAWLADAAQLLEIEPGDSVRNALVGLQEMVKGELTSDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGL-ASGHIRSNEMELIEHLQDVAAVE--F  139
              + +LP D+  L +R  AL  WC G V GFGL A G   S+E +  E LQD+ A+    
Sbjct  83   AIVLLLPTDDAALSDRATALGQWCQGFVTGFGLNAGGKDLSDEAK--EVLQDLVAISQVQ  140

Query  140  EDSDDDEDGEISYQELYEFVRLIPVSL  166
            E  ++ EDGE  Y E+ E++R+ P+ L
Sbjct  141  EALEESEDGESDYMEVMEYLRVAPLLL  167


>B0KP86 UPF0149 protein PputGB1_5261 [Pseudomonas putida (strain 
GB-1)]
Length=184

 Score = 82.0 bits (201),  Expect = 3e-23
 Identities = 52/147 (35%), Positives = 76/147 (52%), Gaps = 5/147 (3%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            +P+ELHGL+ G  C       D WL   A L      D   + L    E V   L+ D++
Sbjct  23   TPAELHGLLIGRSCAGAGFDADAWLADAAQLLETEPGDTVRNALIGLQEMVKGELNSDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGL-ASGHIRSNEMELIEHLQDVAAVE--F  139
              + +LP D+  L +R  AL  WC G + GFGL A G   S+E +  + LQD+ A+    
Sbjct  83   AIVLLLPSDDAALSDRATALGQWCQGFITGFGLNAGGKDLSDEAK--DVLQDLVAISQVQ  140

Query  140  EDSDDDEDGEISYQELYEFVRLIPVSL  166
            E  ++ EDGE  Y E+ E++R+ P+ L
Sbjct  141  EALEESEDGESDYMEVMEYLRVAPLLL  167


>Q48PR0 UPF0149 protein PSPPH_0305 [Pseudomonas savastanoi pv. 
phaseolicola (strain 1448A / Race 6)]
Length=184

 Score = 81.6 bits (200),  Expect = 4e-23
 Identities = 51/146 (35%), Positives = 77/146 (53%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C       + W    + L      D     L    E V   L+ D++
Sbjct  23   SPAELHGLLLGRSCAGAGFDNEGWFADASVLLETEPQDNIRQALIGLQEMVKGELTGDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASGHIRSNEMELIEHLQDVAAV-EFED  141
              + +LP D+  L ER  AL  WC G + GFGLA G  ++   E  + L+D+AA+ + +D
Sbjct  83   TVVLLLPGDDEPLTERAAALGQWCQGFLAGFGLAIGD-KTLGTEAKDVLEDLAAIAQVQD  141

Query  142  S-DDDEDGEISYQELYEFVRLIPVSL  166
            + D+ EDGE  Y E+ E++R+ P+ L
Sbjct  142  ALDESEDGETDYMEVMEYMRVAPLLL  167


>B1JEZ1 UPF0149 protein PputW619_5026 [Pseudomonas putida (strain 
W619)]
Length=184

 Score = 80.9 bits (198),  Expect = 8e-23
 Identities = 49/146 (34%), Positives = 77/146 (53%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C       D WL   A +      D   + L    E V   L+ +++
Sbjct  23   SPAELHGLLIGRSCAGAGFEADAWLADAAGVLENEPEDNVRAALIGLQEMVKAELTGEDI  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASG--HIRSNEMELIEHLQDVAAVEFE  140
              + +LP DE  L ER  AL  WC G + GFGL +G   + ++  E+++ L  ++ V+ E
Sbjct  83   AIVLLLPSDETPLTERATALGQWCQGFIAGFGLNAGGKDLSTDAKEVLQDLVAISQVQ-E  141

Query  141  DSDDDEDGEISYQELYEFVRLIPVSL  166
              ++ EDGE  Y E+ E++R+ P+ L
Sbjct  142  ALEESEDGESDYMEVMEYLRVAPLLL  167


>Q1I350 UPF0149 protein PSEEN5316 [Pseudomonas entomophila (strain 
L48)]
Length=184

 Score = 80.1 bits (196),  Expect = 1e-22
 Identities = 47/146 (32%), Positives = 77/146 (53%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            +P+ELHGL+ G  C       D WL   A L      D   + L    E V   L+ +++
Sbjct  23   TPAELHGLLIGRSCAGAGFDADAWLADAAQLLETEPGDTVRNALVGLQEMVKAELTGEDV  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASG--HIRSNEMELIEHLQDVAAVEFE  140
              + +LP D+  L +R  AL  WC G + GFGL +G   + ++  E+++ L  ++ V+ E
Sbjct  83   AIVLLLPSDDAALADRAAALGQWCQGFITGFGLNAGGKDLSTDAKEVLQDLVAISQVQ-E  141

Query  141  DSDDDEDGEISYQELYEFVRLIPVSL  166
              ++ EDGE  Y E+ E++R+ P+ L
Sbjct  142  ALEESEDGENDYMEVMEYLRVAPLLL  167


>Q87US2 UPF0149 protein PSPTO_5224 [Pseudomonas syringae pv. tomato 
(strain ATCC BAA-871 / DC3000)]
Length=184

 Score = 80.1 bits (196),  Expect = 1e-22
 Identities = 49/146 (34%), Positives = 74/146 (51%), Gaps = 3/146 (2%)

Query  23   SPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLSDAALSLLGDEAEDVSHALSEDEL  82
            SP+ELHGL+ G  C       + W    + L      D   + L    E V   L+ D++
Sbjct  23   SPAELHGLLLGRSCAGAGFDNEGWFADASMLLETEPQDNIRAALVGLQEMVKGELTGDDM  82

Query  83   DYLPILPDDEHTLQERVQALADWCAGVVLGFGLASGH--IRSNEMELIEHLQDVAAVEFE  140
              + +LP D+  L ER  AL  WC G + GFGLA G   + S    ++E L  +A V+ +
Sbjct  83   TVVLLLPGDDEPLTERAAALGQWCQGFLAGFGLAIGDKVLGSEAKAVLEDLAAIAQVQ-D  141

Query  141  DSDDDEDGEISYQELYEFVRLIPVSL  166
              ++ EDGE  Y E+ E++R+ P+ L
Sbjct  142  ALEESEDGETDYMEVMEYMRVAPLLL  167


>P0A8C4 UPF0149 protein YgfB [Escherichia coli (strain K12)]
Length=192

 Score = 73.9 bits (180),  Expect = 4e-20
 Identities = 48/167 (29%), Positives = 87/167 (52%), Gaps = 8/167 (5%)

Query  1    MQDDISGWNEWNQNFNGIEEITSPSELHGLVTGIVCVTEPPSRDEWLQILATLNVPTLS-  59
            +Q+++ G+NE NQ  N      +P+E+HGL++G++C     S   WL +L  L    ++ 
Sbjct  3    IQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS--SWLPLLHDLTNEGMAF  60

Query  60   -DAALSLLGDEAEDVSHALSEDELDYLPILPD-DEHTLQERVQALADWCAGVVLGFGLAS  117
                   L       S AL +D   +   LPD D+ ++ +R  ALA W    +LG G+  
Sbjct  61   GHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRADALAGWVNHFLLGLGVTQ  120

Query  118  ---GHIRSNEMELIEHLQDVAAVEFEDSDDDEDGEISYQELYEFVRL  161
                 +     E I+ L+++A + +++ +D E+ E+S +E+ E+VR+
Sbjct  121  PKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRV  167



Lambda      K        H        a         alpha
   0.315    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 308850


  Database: a0805ef4ff37e51f8d647303b3ee5c1a.SwissProt.fasta
    Posted date:  May 19, 2024  11:51 PM
  Number of letters in database: 2,219
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40