Comparative Genomics

ACIAD1133 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 4f2805db1f0a92644ca61285daa0f119.SwissProt.fasta
           7 sequences; 1,848 total letters



Query= ACIAD1133

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q7CPQ6 Outer membrane lipoprotein DolP [Salmonella typhimurium (s...  77.8    2e-21
P45301 Outer membrane lipoprotein DolP [Haemophilus influenzae (s...  77.8    2e-21
P64597 Outer membrane lipoprotein DolP [Escherichia coli O6:H1 (s...  76.3    6e-21
P64598 Outer membrane lipoprotein DolP [Escherichia coli O157:H7]     76.3    6e-21
P64596 Outer membrane lipoprotein DolP [Escherichia coli (strain ...  76.3    6e-21
P46028 21 kDa hemolysin [Actinobacillus pleuropneumoniae]             65.5    6e-17
Q74CS9 Polyribonucleotide nucleotidyltransferase [Geobacter sulfu...  36.6    2e-06


>Q7CPQ6 Outer membrane lipoprotein DolP [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=191

 Score = 77.8 bits (190),  Expect = 2e-21
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 5/191 (3%)

Query  2    FKRIAVTMVCVASLSGCASFISGGTGSAPVGTESGA--RSLGQVFIDSSIKRTASINLYK  59
            F  +AV ++    L GC +  +   G+A VGT++    RS+G    D +++   S  L K
Sbjct  4    FSPLAV-LISALLLQGCVA--AAVVGTAAVGTKAATDPRSVGTQVDDGTLELRVSSALSK  60

Query  60   LDPRFKQSRVNIESFHSNVLLTGQVADENLRQLAEDNVKSMSDVKTVHNYITVGPQIGYS  119
             +   K++R+N+ ++   VLL GQ  +  L   A+     +     V+N I  G  IG  
Sbjct  61   DEQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVEGTTEVYNEIRQGQPIGLG  120

Query  120  TIMQDTAVTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIADLNDVLQKVGNV  179
            T   DT +T   R+ L+ +  V  + V + TE+G ++++G +   E     D+  +V  V
Sbjct  121  TASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLGLVTEREGKAAADIASRVSGV  180

Query  180  TKIVTLIDNIE  190
             ++ T    I+
Sbjct  181  KRVTTAFTYIK  191


>P45301 Outer membrane lipoprotein DolP [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=193

 Score = 77.8 bits (190),  Expect = 2e-21
 Identities = 49/190 (26%), Positives = 98/190 (52%), Gaps = 5/190 (3%)

Query  3    KRIAVTMVCVASLSGC-ASFISGGTGSAPVGTESGARSLGQVFIDSSIKRTASINLYKLD  61
            K++A+ +     L GC A+ I GG  +A V T+   R+ G    D +++     N  + D
Sbjct  7    KKLAILLGATIFLQGCVAAVIGGGAVAAKVATDP--RTTGTQIDDETLEFKVE-NAVEKD  63

Query  62   PRFK-QSRVNIESFHSNVLLTGQVADENLRQLAEDNVKSMSDVKTVHNYITVGPQIGYST  120
             + K + RVN  S++  VLL GQV + +++  A    K +  V  V+N +TV P+I ++ 
Sbjct  64   AQIKAEGRVNAVSYNGRVLLIGQVPNSDVKDTATALAKGVEGVNEVYNELTVSPKISFAQ  123

Query  121  IMQDTAVTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIADLNDVLQKVGNVT  180
            I +D+ +T   ++ +     V    V + +E+G ++++G +  ++     D+  K+  V 
Sbjct  124  ISKDSWLTTQVKSKMFVDGRVKATDVKVISENGEVFLLGNVTQSQANAAADIASKISGVK  183

Query  181  KIVTLIDNIE  190
            K++ +   ++
Sbjct  184  KVIKVFKYLD  193


>P64597 Outer membrane lipoprotein DolP [Escherichia coli O6:H1 
(strain CFT073 / ATCC 700928 / UPEC)]
Length=191

 Score = 76.3 bits (186),  Expect = 6e-21
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query  9    MVCVASLSGCASFISGGTGSAPVGTESGA--RSLGQVFIDSSIKRTASINLYKLDPRFKQ  66
            ++    L GC +  +   G+A VGT++    RS+G    D +++   +  L K +   K+
Sbjct  10   LISALLLQGCVA--AAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKE  67

Query  67   SRVNIESFHSNVLLTGQVADENLRQLAEDNVKSMSDVKTVHNYITVGPQIGYSTIMQDTA  126
            +R+N+ ++   VLL GQ  +  L   A+     +     V+N I  G  IG      DT 
Sbjct  68   ARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTW  127

Query  127  VTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIADLNDVLQKVGNVTKIVT  184
            +T   R+ L+ + +V  + V + TE+G +++MG +   E     D+  +V  V ++ T
Sbjct  128  ITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTT  185


>P64598 Outer membrane lipoprotein DolP [Escherichia coli O157:H7]
Length=191

 Score = 76.3 bits (186),  Expect = 6e-21
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query  9    MVCVASLSGCASFISGGTGSAPVGTESGA--RSLGQVFIDSSIKRTASINLYKLDPRFKQ  66
            ++    L GC +  +   G+A VGT++    RS+G    D +++   +  L K +   K+
Sbjct  10   LISALLLQGCVA--AAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKE  67

Query  67   SRVNIESFHSNVLLTGQVADENLRQLAEDNVKSMSDVKTVHNYITVGPQIGYSTIMQDTA  126
            +R+N+ ++   VLL GQ  +  L   A+     +     V+N I  G  IG      DT 
Sbjct  68   ARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTW  127

Query  127  VTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIADLNDVLQKVGNVTKIVT  184
            +T   R+ L+ + +V  + V + TE+G +++MG +   E     D+  +V  V ++ T
Sbjct  128  ITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTT  185


>P64596 Outer membrane lipoprotein DolP [Escherichia coli (strain 
K12)]
Length=191

 Score = 76.3 bits (186),  Expect = 6e-21
 Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query  9    MVCVASLSGCASFISGGTGSAPVGTESGA--RSLGQVFIDSSIKRTASINLYKLDPRFKQ  66
            ++    L GC +  +   G+A VGT++    RS+G    D +++   +  L K +   K+
Sbjct  10   LISALLLQGCVA--AAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKE  67

Query  67   SRVNIESFHSNVLLTGQVADENLRQLAEDNVKSMSDVKTVHNYITVGPQIGYSTIMQDTA  126
            +R+N+ ++   VLL GQ  +  L   A+     +     V+N I  G  IG      DT 
Sbjct  68   ARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTW  127

Query  127  VTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIADLNDVLQKVGNVTKIVT  184
            +T   R+ L+ + +V  + V + TE+G +++MG +   E     D+  +V  V ++ T
Sbjct  128  ITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTT  185


>P46028 21 kDa hemolysin [Actinobacillus pleuropneumoniae]
Length=194

 Score = 65.5 bits (158),  Expect = 6e-17
 Identities = 38/153 (25%), Positives = 79/153 (52%), Gaps = 0/153 (0%)

Query  38   RSLGQVFIDSSIKRTASINLYKLDPRFKQSRVNIESFHSNVLLTGQVADENLRQLAEDNV  97
            RS G    D  ++   + NL K     +++R+N+ +++  VLL GQ    +  + A++  
Sbjct  42   RSAGTQVDDEVLEERVAYNLSKDAQLKEEARINVVAYNGKVLLIGQAPTMSASESAKNLA  101

Query  98   KSMSDVKTVHNYITVGPQIGYSTIMQDTAVTANTRALLMRAPVVSDNKVMLHTEDGVLYV  157
                 V  ++N I  G +IG   I  D+ +T   ++ L+    V   +V + TE+G +++
Sbjct  102  AGAEGVTEIYNEIRTGEKIGVGQISIDSWITTAIKSKLLANSEVKATEVKVITENGEVFL  161

Query  158  MGRLNNAEIADLNDVLQKVGNVTKIVTLIDNIE  190
            +G+L+ A+     +V + V  V K++ +I+ ++
Sbjct  162  IGKLSPAQADAAAEVARNVRGVNKVIKVINYVQ  194


>Q74CS9 Polyribonucleotide nucleotidyltransferase [Geobacter sulfurreducens 
(strain ATCC 51573 / DSM 12127 / PCA)]
Length=697

 Score = 36.6 bits (83),  Expect = 2e-06
 Identities = 21/82 (26%), Positives = 36/82 (44%), Gaps = 8/82 (10%)

Query  108  NYITVGPQIGYSTIMQDTAVTANTRALLMRAPVVSDNKVMLHTEDGVLYVMGRLNNAEIA  167
            ++   G + G + I  D  +T  TR ++         K +L   DG L+++G++N A  A
Sbjct  490  DFKVAGTEAGVTAIQMDIKITGVTREIM--------EKALLQARDGRLHILGKMNQAIAA  541

Query  168  DLNDVLQKVGNVTKIVTLIDNI  189
               D+      +T I    D I
Sbjct  542  PRTDLSPYAPRITTIWVKTDKI  563


 Score = 16.2 bits (30),  Expect = 4.9
 Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query  97   VKSMSDVKTVHNYITVGPQIGYSTIMQDTAVTANTRALLMRAPVVSDNKVMLHTEDGVLY  156
            ++ +SD+   +   ++    G +  M D  V        ++APV      ++   +G+  
Sbjct  423  IRIVSDILESNGSSSMATVCGGALAMMDAGVP-------IKAPVAGIAMGLIKEGEGIAI  475

Query  157  VMGRLNNAEIADLNDVLQKVGNVTKIVTLI  186
            +   L + +   L D+  KV      VT I
Sbjct  476  LSDILGDED--HLGDMDFKVAGTEAGVTAI  503



Lambda      K        H        a         alpha
   0.317    0.131    0.361    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 309855


  Database: 4f2805db1f0a92644ca61285daa0f119.SwissProt.fasta
    Posted date:  May 9, 2024  12:41 PM
  Number of letters in database: 1,848
  Number of sequences in database:  7



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40