BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: f88f557e78c16f15f1aa44f8b7f7424e.SwissProt.fasta
13 sequences; 6,130 total letters
Query= ACIAD1147
Length=464
Score E
Sequences producing significant alignments: (Bits) Value
O31462 Uncharacterized amino acid permease YbgF [Bacillus subtili... 508 0.0
Q47689 Probable S-methylmethionine permease [Escherichia coli (st... 503 6e-180
P42087 Putative histidine permease [Bacillus subtilis (strain 168)] 455 4e-161
P39636 Amino-acid permease RocC [Bacillus subtilis (strain 168)] 441 8e-156
P39137 Amino-acid permease RocE [Bacillus subtilis (strain 168)] 436 1e-153
P25737 Lysine-specific permease LysP [Escherichia coli (strain K12)] 359 3e-123
A2RNZ6 Lysine-specific permease LysP [Lactococcus lactis subsp. c... 344 4e-117
P46349 Gamma-aminobutyric acid permease [Bacillus subtilis (strai... 324 5e-110
A2RI97 Histidine permease HisP [Lactococcus lactis subsp. cremori... 323 1e-109
O34618 Uncharacterized amino acid permease YtnA [Bacillus subtili... 318 1e-107
P37460 Proline-specific permease ProY [Salmonella typhimurium (st... 300 1e-100
P0A189 Probable transport protein YifK [Salmonella typhimurium (s... 285 6e-95
P24207 Phenylalanine-specific permease [Escherichia coli (strain ... 280 6e-93
>O31462 Uncharacterized amino acid permease YbgF [Bacillus subtilis
(strain 168)]
Length=470
Score = 508 bits (1307), Expect = 0.0
Identities = 248/452 (55%), Positives = 319/452 (71%), Gaps = 6/452 (1%)
Query 9 KRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGELA 68
+R+M +RHL MLSLGG IGTGLFL SG I Q GP G ++AY++G I Y+VMLCLGEL+
Sbjct 13 QRSMKSRHLFMLSLGGVIGTGLFLSSGYTIQQAGPAGTILAYLVGAGIVYLVMLCLGELS 72
Query 69 VHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWIW 128
V MPV+G+F YA KYIGPGTG+ ++W+YWLTWT LG+EFTAA LLMQ WFPHTS+W+W
Sbjct 73 VAMPVTGAFHTYAAKYIGPGTGFTVAWLYWLTWTVALGSEFTAAGLLMQRWFPHTSVWMW 132
Query 129 TIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPLF 188
+ +FAL IF LN S FAESEFW S +KVL ++ FI+LG A+FGII +G +AP+
Sbjct 133 SAVFALFIFLLNAFSVKFFAESEFWFSSIKVLAIVLFILLGGSAMFGIIPIKGGEAAPML 192
Query 189 SNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWRLL 247
SN T+ G FP G +PI TML VNFAFSGTELIG+AAGE+ DP +PKAI +WRL
Sbjct 193 SNFTAEGGLFPNGFVPILMTMLSVNFAFSGTELIGIAAGESVDPDKTIPKAIKTTVWRLS 252
Query 248 IFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSAAN 307
+FFVGTI V+S L+P G V SPFV VF +G+PYA I+ FVI+TA+LSAAN
Sbjct 253 LFFVGTIFVLSGLIPIQDAG-----VIKSPFVAVFDRVGVPYAADIMNFVILTAILSAAN 307
Query 308 SGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAPETIFKN 367
SGLYA+SRM+WSLS ++ L F+KLT+ GTP ALV +M G I LLS FAP+T++
Sbjct 308 SGLYASSRMLWSLSKEKTLHPTFAKLTSKGTPFNALVFSMIGGILSLLSSVFAPDTVYVV 367
Query 368 LLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLFCLITGL 427
L+ ++ F +V+VWM I SQF FR+ + + G DLK+ PL+P +PI FL CL + +
Sbjct 368 LVSISGFAVVVVWMGIAASQFMFRKRYIEAGNKVTDLKYRTPLYPFVPIAAFLLCLASVV 427
Query 428 SMAKDPEMLPGFIGCLIFVACCYLSHYIFYRE 459
+A DP + F+A CY +Y+ R+
Sbjct 428 GIAFDPNQRIALYCGVPFMAICYAIYYVKNRK 459
>Q47689 Probable S-methylmethionine permease [Escherichia coli
(strain K12)]
Length=467
Score = 503 bits (1294), Expect = 6e-180
Identities = 239/457 (52%), Positives = 320/457 (70%), Gaps = 5/457 (1%)
Query 6 APLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLG 65
APLKR M TRHL+MLSLGG IGTGLF +G +I+ TG G ++AY++G L+ ++VM CLG
Sbjct 8 APLKRTMKTRHLIMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVWLVMQCLG 67
Query 66 ELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSM 125
EL+V MP +G+F YA +Y+GP TGY ++W+YWLTWT LG+ FTAA MQ WFP +
Sbjct 68 ELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSFTAAGFCMQYWFPQVPV 127
Query 126 WIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASA 185
W+W ++F IFGLN+ ST FAE EFW SLVKV+T+I+FIILG AIFG I + + A
Sbjct 128 WVWCVVFCAIIFGLNVISTRFFAEGEFWFSLVKVVTIIAFIILGGAAIFGFIPMQDGSPA 187
Query 186 PLFSNLTSHGWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWR 245
P SN+T+ GWFP G +PI TM+ VNFAFSGTELIG+AAGET++P +P AI I R
Sbjct 188 PGLSNITAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPRKVIPVAIRTTIAR 247
Query 246 LLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSA 305
L+IFF+GT+ V++AL+P Q G V SPFV VF+ +GIPYA I FVI+TA+LSA
Sbjct 248 LIIFFIGTVFVLAALIPMQQVG-----VEKSPFVLVFEKVGIPYAADIFNFVILTAILSA 302
Query 306 ANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAPETIF 365
ANSGLYA+ RM+WSLSN+R LP+ F+++T +G P+ AL V+M G + L S AP+T+F
Sbjct 303 ANSGLYASGRMLWSLSNERTLPACFARVTKNGVPLTALSVSMLGGVLALFSSVVAPDTVF 362
Query 366 KNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLFCLIT 425
L ++ F +V VW+SIC S F FRR +QG +L + AP +P++P+LGF+ CL+
Sbjct 363 VALSAISGFAVVAVWLSICASHFVFRRRHLQQGKALSELHYRAPWYPLVPVLGFVLCLVA 422
Query 426 GLSMAKDPEMLPGFIGCLIFVACCYLSHYIFYREKSK 462
+ +A DP L FVA CY ++++ +K
Sbjct 423 CVGLAFDPAQRIALWCGLPFVALCYGAYFLTQPRNAK 459
>P42087 Putative histidine permease [Bacillus subtilis (strain
168)]
Length=475
Score = 455 bits (1171), Expect = 4e-161
Identities = 221/454 (49%), Positives = 309/454 (68%), Gaps = 7/454 (2%)
Query 3 DSAAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVML 62
+S+ LKR M +RHL M+SLGG IGTGLFL +G + Q GP G ++AY++GGL+ Y+VM
Sbjct 6 NSSQQLKRTMKSRHLFMISLGGVIGTGLFLSTGYTLHQAGPGGTILAYVIGGLMMYLVMQ 65
Query 63 CLGELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPH 122
CLGEL+V MPV+GSF YA +IGP TG+M+ +YW+ W T+G+EFTA+ +LMQ WFP
Sbjct 66 CLGELSVAMPVTGSFQKYATTFIGPSTGFMVGIMYWINWVVTVGSEFTASGILMQRWFPD 125
Query 123 TSMWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGH 182
+S+W+W+ IFA +F N S +FAE+EFW S VK++T+I FIILG A+FG+I G
Sbjct 126 SSVWMWSAIFAALLFICNAFSVKLFAETEFWFSSVKIVTIILFIILGGAAMFGLISLNGT 185
Query 183 ASAPLFSNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINA 241
A AP+ SN T H G FP G + +F M+ V+FAFSGTELIGV AGE+ +P ++P++I
Sbjct 186 ADAPMLSNFTDHGGLFPNGFLAVFIAMISVSFAFSGTELIGVTAGESANPQKDIPRSIRN 245
Query 242 AIWRLLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITA 301
WR +IFF+G + ++S L+ + G V SPFV VF IGIPYA I+ FVI+TA
Sbjct 246 VAWRTVIFFIGAVFILSGLISWKDAG-----VIESPFVAVFAEIGIPYAADIMNFVILTA 300
Query 302 LLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAP 361
LLS ANSGLYA++RMMWSL+N+ + S F K+T+ G P+ AL+++M + L+S AP
Sbjct 301 LLSVANSGLYASTRMMWSLANENMISSRFKKVTSKGIPLNALMISMAVSCLSLVSSIVAP 360
Query 362 ETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLF 421
T++ ++ +A F V+VWMSI LSQ FR+ + K+G KDL F PL+P++PI L
Sbjct 361 GTVYVVMVAIAGFAGVVVWMSIALSQLLFRKRFLKKGGDVKDLTFRTPLYPLMPIAALLL 420
Query 422 CLITGLSMAKDP-EMLPGFIGCLIFVACCYLSHY 454
C + + +A DP + + F G + C + H+
Sbjct 421 CSASCIGLAFDPNQRIALFCGVPCIILCYLIYHF 454
>P39636 Amino-acid permease RocC [Bacillus subtilis (strain 168)]
Length=470
Score = 441 bits (1135), Expect = 8e-156
Identities = 213/454 (47%), Positives = 302/454 (67%), Gaps = 6/454 (1%)
Query 8 LKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGEL 67
L+R+M +RHL M++LGG IGTGLFLGSG I+Q GP+GA+ AY++GG + Y+VMLCLGEL
Sbjct 8 LQRSMKSRHLFMIALGGVIGTGLFLGSGFTISQAGPLGAIAAYIIGGFLMYLVMLCLGEL 67
Query 68 AVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWI 127
AV MPV+GSF AYA K++G TG+MI W+YW +W T+G E T+A +LMQ W P +WI
Sbjct 68 AVAMPVAGSFQAYATKFLGQSTGFMIGWLYWFSWANTVGLELTSAGILMQRWLPSVPIWI 127
Query 128 WTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPL 187
W ++F + IF +N S FAE EFW S +KV +I FI++G A+FG+I F+G P
Sbjct 128 WCLVFGIVIFLINALSVRSFAEMEFWFSSIKVAAIILFIVIGGAAVFGLIDFKGGQETPF 187
Query 188 FSN-LTSHGWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWRL 246
SN +T G FP G++ + T+++VNF+F GTEL+G+AAGE++ P +PK+I IWR
Sbjct 188 LSNFMTDRGLFPNGVLAVMFTLVMVNFSFQGTELVGIAAGESESPEKTLPKSIRNVIWRT 247
Query 247 LIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSAA 306
L FFV + V+ A+LPY G V SPFV V IGIP++ I+ FVI+TA+LS A
Sbjct 248 LFFFVLAMFVLVAILPYKTAG-----VIESPFVAVLDQIGIPFSADIMNFVILTAILSVA 302
Query 307 NSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAPETIFK 366
NSGLYAASRMMWSLS+ + PS ++LT G P+ AL++T+ + LL+ A ET++
Sbjct 303 NSGLYAASRMMWSLSSNQMGPSFLTRLTKKGVPMNALLITLGISGCSLLTSVMAAETVYL 362
Query 367 NLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLFCLITG 426
+ ++ V+ WMSIC SQF FRR + +G + DL+F PL+P++PILGF
Sbjct 363 WCISISGMVTVVAWMSICASQFFFRRRFLAEGGNVNDLEFRTPLYPLVPILGFCLYGCVL 422
Query 427 LSMAKDPEMLPGFIGCLIFVACCYLSHYIFYREK 460
+S+ P+ G + + CY +++ +++
Sbjct 423 ISLIFIPDQRIGLYCGVPIIIFCYAYYHLSIKKR 456
Score = 18.1 bits (35), Expect = 8.6
Identities = 9/38 (24%), Positives = 20/38 (53%), Gaps = 0/38 (0%)
Query 426 GLSMAKDPEMLPGFIGCLIFVACCYLSHYIFYREKSKL 463
G+ M + +P +I CL+F +L + + R +++
Sbjct 113 GILMQRWLPSVPIWIWCLVFGIVIFLINALSVRSFAEM 150
>P39137 Amino-acid permease RocE [Bacillus subtilis (strain 168)]
Length=467
Score = 436 bits (1121), Expect = 1e-153
Identities = 210/460 (46%), Positives = 301/460 (65%), Gaps = 5/460 (1%)
Query 3 DSAAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVML 62
D+ L+R M +RHL M+SLGG IGTG FLG+G I Q GP+GAV++Y++GG I ++ ML
Sbjct 6 DNGNQLQRTMKSRHLFMISLGGVIGTGFFLGTGFTINQAGPLGAVLSYLVGGFIMFLTML 65
Query 63 CLGELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPH 122
CLGELAV PVSGSF YA K+I P G+ W+YWL W T EF +A LMQ WFPH
Sbjct 66 CLGELAVAFPVSGSFQTYATKFISPAFGFAFGWLYWLGWAVTCAIEFLSAGQLMQRWFPH 125
Query 123 TSMWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGH 182
+WIW ++FA +F LN +T FAESEFW S +K+L ++ FIILG A+FG+I +G
Sbjct 126 IDVWIWCLVFAALMFILNAITTKAFAESEFWFSGIKILIILLFIILGGAAMFGLIDLKGG 185
Query 183 ASAPLFSNLTSHGWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAA 242
AP ++ G FP G+ + TM+ VNFAF GTELIGVAAGE++DP +P++I
Sbjct 186 EQAPFLTHFYEDGLFPNGIKAMLITMITVNFAFQGTELIGVAAGESEDPEKTIPRSIKQT 245
Query 243 IWRLLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITAL 302
+WR L+FFV +I+VI+ ++P+ Q G V SPFV VF+ IGIPYA I+ FVI+ AL
Sbjct 246 VWRTLVFFVLSIIVIAGMIPWKQAG-----VVESPFVAVFEQIGIPYAADIMNFVILIAL 300
Query 303 LSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAPE 362
LS ANSGLYA++R++++++N+ Q K G P+ +L+VTM A LL++ E
Sbjct 301 LSVANSGLYASTRILYAMANEGQAFKALGKTNQRGVPMYSLIVTMAVACLSLLTKFAQAE 360
Query 363 TIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLFC 422
T++ LL +A + + W++I LSQ FRR + ++G +DLKF PL+P+LP++G
Sbjct 361 TVYMVLLSLAGMSAQVGWITISLSQIMFRRKYIREGGKIEDLKFKTPLYPVLPLIGLTLN 420
Query 423 LITGLSMAKDPEMLPGFIGCLIFVACCYLSHYIFYREKSK 462
+ +S+A DPE + F+ CY+ +++ +++ +
Sbjct 421 TVVLISLAFDPEQRIALYCGVPFMIICYIIYHVVIKKRQQ 460
>P25737 Lysine-specific permease LysP [Escherichia coli (strain
K12)]
Length=489
Score = 359 bits (921), Expect = 3e-123
Identities = 183/426 (43%), Positives = 263/426 (62%), Gaps = 5/426 (1%)
Query 5 AAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCL 64
A L+R + RHL M+++GG+IGTGLF+ SG I+Q GP GA+++YML GL+ Y +M L
Sbjct 10 APGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSL 69
Query 65 GELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTS 124
GELA +MPVSGSF Y + Y+ G G+ + W YW W T+ + AA L+M WFP T
Sbjct 70 GELAAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTP 129
Query 125 MWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHAS 184
WIW+ +F IF LN S F E+E+W SL+KV TVI FII+G+L I GI F+G
Sbjct 130 GWIWSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGI--FKGAQP 187
Query 185 APLFSNLTSHGWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIW 244
A + F G + +IV F+F GTELIG+AAGE++DP+ N+P+A+ W
Sbjct 188 AGWSNWTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFW 247
Query 245 RLLIFFVGTIVVISALLPYDQTGLGGHNV---SNSPFVTVFQYIGIPYADHIIRFVIITA 301
R+L+F+V I++IS ++PY L ++V S SPF VFQ+ G+ A ++ VI+TA
Sbjct 248 RILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTA 307
Query 302 LLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAP 361
+LSA NSG+YA++RM+++L+ + P +F+KL+ G P AL T A L+ F
Sbjct 308 VLSAGNSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGN 367
Query 362 ETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLF 421
+T++ LL + T I W+ I +S + FRR + QG+ DL + + FP+ PI F+
Sbjct 368 QTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFIL 427
Query 422 CLITGL 427
CLI L
Sbjct 428 CLIITL 433
Score = 20.0 bits (40), Expect = 2.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 437 PGFIGCLIFVACCYLSHYIFYR 458
PG+I +F+ +L +YI R
Sbjct 129 PGWIWSALFLGVIFLLNYISVR 150
Score = 19.2 bits (38), Expect = 3.8
Identities = 14/49 (29%), Positives = 20/49 (41%), Gaps = 1/49 (2%)
Query 104 TLGTEFTAAALLMQEWFPHTSMWIWTIIFALTIFGLNL-SSTHIFAESE 151
TLG + A +W + +I +F + FG L TH SE
Sbjct 432 TLGQNYEAFLKDTIDWGGVAATYIGIPLFLIIWFGYKLIKGTHFVRYSE 480
>A2RNZ6 Lysine-specific permease LysP [Lactococcus lactis subsp.
cremoris (strain MG1363)]
Length=508
Score = 344 bits (882), Expect = 4e-117
Identities = 178/466 (38%), Positives = 286/466 (61%), Gaps = 17/466 (4%)
Query 8 LKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGEL 67
+KRA+ +RH+ M++LGG IGTGLFL SG+VI GP GA+ AY+L G + Y +M LGE+
Sbjct 33 VKRALKSRHVSMIALGGTIGTGLFLTSGDVIHTAGPFGALTAYVLIGAMVYFLMTSLGEM 92
Query 68 AVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWI 127
A ++P SGSF Y +Y+ P G+ + W YWL W T+ + TA AL ++ W P WI
Sbjct 93 ATYLPTSGSFSDYGTRYVDPAFGFALGWNYWLNWAITVAVDLTAVALCIKFWLPDVPSWI 152
Query 128 WTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPL 187
+++I + +F +N S F E+E+WLS +K+ V+ F+I+G L+IFGI+ GH
Sbjct 153 FSLIALIIVFSINALSVKTFGETEYWLSAIKITVVVLFLIIGFLSIFGIM--GGHIDVAK 210
Query 188 FSNLTSHGWFPQGLMP------IFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINA 241
++ +HG F GL I +L+ F+F GTEL+G+ AGE ++P ++PKA+N+
Sbjct 211 NLSVGNHG-FVGGLGSFTTGGGILGVLLVAGFSFQGTELLGITAGEAENPEKSIPKAMNS 269
Query 242 AIWRLLIFFVGTIVVISALLPY-DQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIIT 300
WR+L+F++ +I V++A++P+ D +GG++ + SPF VF+ +G A I+ V++T
Sbjct 270 IFWRILVFYILSIFVMAAIIPFTDPHLVGGNSAAQSPFTIVFERVGFSIAASIMNAVVLT 329
Query 301 ALLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFA 360
+++SAANSG+YA++RM++SL+ P +FSK + +G P IAL+ T A+ L+ +
Sbjct 330 SVVSAANSGMYASTRMLYSLAKDGGAPKIFSKTSKNGIPFIALLATTAVALLTFLTSIYG 389
Query 361 PETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFL 420
+ F L+ + T I W+ I +S F FRR + QG K L + A LFP PIL +
Sbjct 390 -VSFFTLLVSASGLTGFIAWIGIAISHFRFRRAYVAQGKDVKKLPYHAKLFPFGPILALI 448
Query 421 FCLITGLSMAKDPEMLPG---FIGCLIFVAC-CYLSHYIFYREKSK 462
++ +++ +DP +L G G +++ A + Y+ Y+ K+K
Sbjct 449 MTVL--VTLGQDPMLLFGKTWVQGVVMYAAIPLFFILYLGYKFKNK 492
>P46349 Gamma-aminobutyric acid permease [Bacillus subtilis (strain
168)]
Length=469
Score = 324 bits (831), Expect = 5e-110
Identities = 174/464 (38%), Positives = 274/464 (59%), Gaps = 25/464 (5%)
Query 4 SAAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLC 63
S + LK+ + TRH+ M+S+ G IG GLF+GSG VI TGP GAV++Y L GL+ +M
Sbjct 4 SQSGLKKELKTRHMTMISIAGVIGAGLFVGSGSVIHSTGP-GAVVSYALAGLLVIFIMRM 62
Query 64 LGELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHT 123
LGE++ P SGSF YA IGP G+ I W+YW W + E A A ++Q WF
Sbjct 63 LGEMSAVNPTSGSFSQYAHDAIGPWAGFTIGWLYWFFWVIVIAIEAIAGAGIIQYWFHDI 122
Query 124 SMWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHA 183
+W+ ++I + + N+ S F E E+W SL+KV+T+I+F+I+G IFG
Sbjct 123 PLWLTSLILTIVLTLTNVYSVKSFGEFEYWFSLIKVVTIIAFLIVGFAFIFGF----APG 178
Query 184 SAPL-FSNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINA 241
S P+ FSNLT G+FP+G+ + +++V F+F GTE++ +AAGET +P +V KA +
Sbjct 179 SEPVGFSNLTGKGGFFPEGISSVLLGIVVVIFSFMGTEIVAIAAGETSNPIESVTKATRS 238
Query 242 AIWRLLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITA 301
+WR+++F+VG+I ++ ALLP++ N+ SPFV V ++IG+P A I+ F+++TA
Sbjct 239 VVWRIIVFYVGSIAIVVALLPWNSA-----NILESPFVAVLEHIGVPAAAQIMNFIVLTA 293
Query 302 LLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAP 361
+LS NSGLY SRM++SL+ + + P F KL+ G P+ A+V F + ++ F+P
Sbjct 294 VLSCLNSGLYTTSRMLYSLAERNEAPRRFMKLSKKGVPVQAIVAGTFFSYIAVVMNYFSP 353
Query 362 ETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLF 421
+T+F L+ + ++V++ I +SQ R+ K A LK LFP L L +
Sbjct 354 DTVFLFLVNSSGAIALLVYLVIAVSQLKMRKKLEKTNPEA--LKIKMWLFPFLTYLTIIA 411
Query 422 CLITGLSMA-----KDPEMLPGFIGCLIFVACCYLSHYIFYREK 460
+SMA +D +L G I ++ ++ Y+ +R++
Sbjct 412 ICGILVSMAFIDSMRDELLLTGVITGIVLIS------YLVFRKR 449
>A2RI97 Histidine permease HisP [Lactococcus lactis subsp. cremoris
(strain MG1363)]
Length=477
Score = 323 bits (829), Expect = 1e-109
Identities = 164/439 (37%), Positives = 264/439 (60%), Gaps = 11/439 (3%)
Query 2 LDSAAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVM 61
+++ +KR + RH+ M++LGG IGTGLFL SG I+Q GP GAV+AY G++ Y VM
Sbjct 1 MENQNQVKRNLKQRHITMIALGGTIGTGLFLTSGATISQAGPWGAVLAYCFIGIMVYFVM 60
Query 62 LCLGELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFP 121
LGE+A ++P SGSF Y +Y+ P G+ + W YWL T+ + T A L+ Q WFP
Sbjct 61 TSLGEMATYLPTSGSFSDYGGRYVDPAFGFALGWNYWLNGAITIAVDLTTAGLITQFWFP 120
Query 122 HTSMWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEG 181
H WI++ I + IF +N+ + F E+E+WLS +KV+T++ F+ +GLL IFG++ G
Sbjct 121 HLPSWIFSGIATVLIFIINVMAVGAFGETEYWLSTIKVITIVLFLAIGLLTIFGVL---G 177
Query 182 HASAPLFSNLT--SHGWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAI 239
+ + +NLT +HG F G+ +LI F+F GTE++G+ AGE++DP +PKA+
Sbjct 178 QGNVDVVANLTAGNHG-FVGGISGFVGVLLIAGFSFQGTEMLGITAGESEDPGKTIPKAM 236
Query 240 NAAIWRLLIFFVGTIVVISALLPYDQTGL--GGHNVSNSPFVTVFQYIGIPYADHIIRFV 297
N+ WR+L+F++ +I+VI+A++ + L SPF VF+ IG A ++ V
Sbjct 237 NSIFWRILLFYIFSIIVIAAIINFKDPRLLNPSSTAVMSPFTIVFKNIGFAVAASVMNAV 296
Query 298 IITALLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSE 357
I+T+++S+ANS +YA++R+++SL ++ P F + +G P AL+ T L+
Sbjct 297 ILTSVISSANSVMYASTRILYSLGQEKGAPKFFGRTAKNGIPFYALLATTIICFIAFLTG 356
Query 358 QFAPETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPIL 417
F + I+ L+ +++ T + W+ I +S FRR + QG +DL + A FP PI+
Sbjct 357 IFGTQ-IYLFLIDLSSLTGFLAWLGISVSHIRFRRAYIAQGKKLEDLPYKAKWFPFGPIV 415
Query 418 GFLFCLITGLSMAKDPEML 436
L + +++ DP ML
Sbjct 416 ALL--MTGAIAINLDPAML 432
Score = 21.2 bits (43), Expect = 0.94
Identities = 23/106 (22%), Positives = 39/106 (37%), Gaps = 15/106 (14%)
Query 48 IAYMLG--GLIAYMVMLCLGELA---VHMPVSGSFGAYAKKYIGPGTG-----YMISW-- 95
IA++ G G Y+ ++ L L + +S S + + YI G Y W
Sbjct 351 IAFLTGIFGTQIYLFLIDLSSLTGFLAWLGISVSHIRFRRAYIAQGKKLEDLPYKAKWFP 410
Query 96 ---VYWLTWTATLGTEFTAAALLMQEWFPHTSMWIWTIIFALTIFG 138
+ L T + A L + W +++ IF + FG
Sbjct 411 FGPIVALLMTGAIAINLDPAMLFSEHWGEGLALYAAIPIFIVLYFG 456
>O34618 Uncharacterized amino acid permease YtnA [Bacillus subtilis
(strain 168)]
Length=463
Score = 318 bits (815), Expect = 1e-107
Identities = 168/448 (38%), Positives = 253/448 (56%), Gaps = 15/448 (3%)
Query 8 LKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGEL 67
L R + RH+ ++SLG AIG GLFLGS I GP G ++AY GL+ + +M LGE+
Sbjct 8 LHRGLEERHISLMSLGAAIGVGLFLGSASAIQLAGP-GILVAYAASGLVMFFIMRALGEM 66
Query 68 AVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWI 127
A+ PV+GSF YA+ Y+GP GY+ W YW W T E TA + M WFP WI
Sbjct 67 AIQKPVAGSFSRYARDYLGPLAGYLTGWNYWFLWVVTCMAEITAVGIYMGFWFPDVPNWI 126
Query 128 WTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPL 187
W + + + G+N + + E EFW +L+K++ ++S I +GLL I + G A+
Sbjct 127 WALSALVIMTGVNFLAVKAYGELEFWFALIKIVAILSMIAVGLLMIIAGVGNGGIATG-- 184
Query 188 FSNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWRL 246
SNL ++ G+FP GL + ++ +V FA+ G E+IGV AGE K+P ++ KAI+ WR+
Sbjct 185 ISNLWNNGGFFPHGLKGVLLSLQMVMFAYLGIEMIGVTAGEVKNPQKSLAKAIDTVFWRI 244
Query 247 LIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSAA 306
LIF+VG + VI ++ P+ + G G SPFV FQ +GIP A II FV++TA LS+
Sbjct 245 LIFYVGALFVIMSIYPWQEIGSQG-----SPFVLTFQKVGIPSAAGIINFVVLTAALSSC 299
Query 307 NSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFAPETIFK 366
NSG+++ RM+++L+ Q++ P + +LT G P A++ + + G+L P +F
Sbjct 300 NSGIFSTGRMLFNLAEQKEAPQAYGQLTKGGIPGKAVLASAGALLVGVLLNYVVPAKVFT 359
Query 367 NLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILGFLFCLITG 426
+ +A F + W I LSQ +R+ + K LK+ PLFP + F
Sbjct 360 WVTSIATFGAIWTWAIILLSQIKYRKSLKPE--EKKQLKYKMPLFPFTSYVSLAFLAFVV 417
Query 427 LSMAKDPE----MLPGFIGCLIFVACCY 450
+ MA P+ ++ G I LI +A Y
Sbjct 418 ILMAYSPDTRVAVIIGPIWFLILLAVYY 445
>P37460 Proline-specific permease ProY [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=456
Score = 300 bits (768), Expect = 1e-100
Identities = 162/423 (38%), Positives = 242/423 (57%), Gaps = 15/423 (4%)
Query 2 LDSAAPLKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVM 61
++S LKR +STRH+ ++LG AIGTGLF GS + I GP ++AY++GG+ AY++M
Sbjct 1 MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIM 59
Query 62 LCLGELAVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFP 121
LGE++VH P + SF YA++ +GP GY+ W Y + TA + M WFP
Sbjct 60 RALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFP 119
Query 122 HTSMWIWTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGL-LAIFGIIHFE 180
WIW + L I +NL S +F E EFW S KV T+I I+ G+ + ++GI
Sbjct 120 AVPHWIWVLSVVLIICAINLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIVWGI---- 175
Query 181 GHASAPL-FSNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKA 238
G+ P NL S+ G+F G + + ++ +V FA+ G E+IG+ AGE KDP ++P+A
Sbjct 176 GNGGQPTGIHNLWSNGGFFSNGWLGMIMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRA 235
Query 239 INAAIWRLLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVI 298
IN+ R+L+F+VGT+ VI ++ P++Q G G SPFV FQ++GI +A I+ FV+
Sbjct 236 INSVPMRILVFYVGTLFVIMSIYPWNQVGTNG-----SPFVLTFQHMGITFAASILNFVV 290
Query 299 ITALLSAANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQ 358
+TA LSA NS ++ RM+ ++ Q P VF+K + G P + ++V + +
Sbjct 291 LTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVTVLVMTIALLFAVYLNY 350
Query 359 FAPETIFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPILG 418
PE +F + +A F V VW+ I LSQ FRR + K LKF P + I G
Sbjct 351 IMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPE--EVKALKFKVPGGVVTTIAG 408
Query 419 FLF 421
+F
Sbjct 409 LIF 411
>P0A189 Probable transport protein YifK [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=461
Score = 285 bits (730), Expect = 6e-95
Identities = 162/454 (36%), Positives = 251/454 (55%), Gaps = 18/454 (4%)
Query 8 LKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGEL 67
L+R + RH+ +++LGG IG GLF+G+ + GP ++AY++ GL + +M +GE+
Sbjct 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEM 66
Query 68 AVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWI 127
PV+GSF YA +Y+ P GY+ +W YW W A +E TA + +Q WFP + WI
Sbjct 67 LFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWI 126
Query 128 WTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPL 187
+I + NL++ ++ E EFW +++KV T+I II+GL IF F A
Sbjct 127 PALIAVGLVALANLAAVRLYGEIEFWFAMIKVTTIIVMIIIGLGVIF--FGFGNGGQAIG 184
Query 188 FSNLTSHGWFPQGLMPIFATML-IVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWRL 246
F NLT HG F G F T L IV ++ G ELIG+ AGE K+P + + A+ +WR+
Sbjct 185 FGNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRI 244
Query 247 LIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSAA 306
LIF+VG I VI + P+++ G G SPFV F IGI A II FV++TA LS
Sbjct 245 LIFYVGAIFVIVTIFPWNEIGSNG-----SPFVLTFAKIGITAAAGIINFVVLTAALSGC 299
Query 307 NSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGLLSEQFA--PETI 364
NSG+Y+ RM+++L+ RQLP+ +K++ G P+ + +++ + G P+ +
Sbjct 300 NSGMYSCGRMLYALAKNRQLPAAVAKVSRHGVPVAGVALSILILLVGSCLNYIIPNPQRV 359
Query 365 FKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPILPIL--GFLFC 422
F + + ++ W I +SQ FRR +K+ D F + +FP L FL C
Sbjct 360 FVYVYSASVLPGMVPWFVILISQLRFRRA-HKEA--IADHPFRSIMFPWANYLTMAFLVC 416
Query 423 LITGLSMAKDPEMLPGFIGCLIFVACCYLSHYIF 456
++ G+ +D M F+G +IF+ L + +F
Sbjct 417 VLIGMYFNEDTRM-SLFVG-VIFLLAVTLVYKVF 448
>P24207 Phenylalanine-specific permease [Escherichia coli (strain
K12)]
Length=458
Score = 280 bits (716), Expect = 6e-93
Identities = 154/426 (36%), Positives = 241/426 (57%), Gaps = 25/426 (6%)
Query 8 LKRAMSTRHLVMLSLGGAIGTGLFLGSGEVITQTGPIGAVIAYMLGGLIAYMVMLCLGEL 67
L R + RH+ +++LGGAIGTGLFLG G I GP ++ Y + G+IA+++M LGE+
Sbjct 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEM 77
Query 68 AVHMPVSGSFGAYAKKYIGPGTGYMISWVYWLTWTATLGTEFTAAALLMQEWFPHTSMWI 127
V PVSGSF +A KY GP G++ W YW+ + E TAA + MQ WFP WI
Sbjct 78 VVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWI 137
Query 128 WTIIFALTIFGLNLSSTHIFAESEFWLSLVKVLTVISFIILGLLAIFGIIHFEGHASAPL 187
W F + I +NL + ++ E+EFW +L+KVL +I I GL + F GH
Sbjct 138 WAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLL-----FSGHGGEKA 192
Query 188 -FSNLTSH-GWFPQGLMPIFATMLIVNFAFSGTELIGVAAGETKDPSINVPKAINAAIWR 245
NL + G+F G + ++ ++ F+F G ELIG+ A E +DP ++PKA+N ++R
Sbjct 193 SIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYR 252
Query 246 LLIFFVGTIVVISALLPYDQTGLGGHNVSNSPFVTVFQYIGIPYADHIIRFVIITALLSA 305
+L+F++G++VV+ AL P+ + ++SPFV +F + + FVI+ A LS
Sbjct 253 ILLFYIGSLVVLLALYPWVEV-----KSNSSPFVMIFHNLDSNVVASALNFVILVASLSV 307
Query 306 ANSGLYAASRMMWSLSNQRQLPSVFSKLTASGTPIIALVVTMFGAIPGL--LSEQFAPET 363
NSG+Y+ SRM++ LS Q P ++++ G PI +L+++ GAI L L P+
Sbjct 308 YNSGVYSNSRMLFGLSVQGNAPKFLTRVSRRGVPINSLMLS--GAITSLVVLINYLLPQK 365
Query 364 IFKNLLGVAAFTMVIVWMSICLSQFNFRRHWYKQGYHAKDLKFAAPLFPI-----LPILG 418
F L+ + T+++ W+ ICL+ FR +QG ++ +F A L+P + LG
Sbjct 366 AFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQG---RETQFKALLYPFGNYLCIAFLG 422
Query 419 FLFCLI 424
+ L+
Sbjct 423 MILLLM 428
Lambda K H a alpha
0.330 0.142 0.452 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2257871
Database: f88f557e78c16f15f1aa44f8b7f7424e.SwissProt.fasta
Posted date: May 30, 2024 6:23 PM
Number of letters in database: 6,130
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
