BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: aeea41047f443d971979d8d537714c35.SwissProt.fasta
           1 sequences; 317 total letters



Query= ACIAD1162

Length=325
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P23485 Ferric citrate uptake sigma factor regulator FecR [Escheri...  65.1    2e-16


>P23485 Ferric citrate uptake sigma factor regulator FecR [Escherichia 
coli (strain K12)]
Length=317

 Score = 65.1 bits (157),  Expect = 2e-16
 Identities = 61/307 (20%), Positives = 130/307 (42%), Gaps = 14/307 (5%)

Query  10   IEEAAKWLVILSSGDYSQNDLDRLEQWKQQSHEHLKTFEELQQFLGQMDVLKSQNLQSQH  69
            +  A+ W  +LS    S     R +QW +Q  ++   +++++    Q+  +         
Sbjct  13   LRSASHWYAVLSGERVSPQQEARWQQWYEQDQDNQWAWQQVENLRNQLGGVPGD------  66

Query  70   PLVQNNILRKTKTKARTAPVLWSGSLIIAVIAIWAVSQLPY-QRWNADHSIEAQQWQQNI  128
              V +  L  T+   R   V+    L++     W + Q    +   AD+        +  
Sbjct  67   --VASRALHDTRLTRRH--VMKGLLLLLGAGGGWQLWQSETGEGLRADYRTAKGTVSRQQ  122

Query  129  LSDQSSVQMAGQTAYNLRYSSNQRKIDLVEGNILVDVTKDH-ARPFVIDLGDIQVQALGT  187
            L D S + +  Q+A ++R+ ++QR + L  G I +   KD   RPF +     Q+ ALGT
Sbjct  123  LEDGSLLTLNTQSAADVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQLTALGT  182

Query  188  KFIVNYNHDQIRVSMIESKTRIYSVHHRFEPIVLQAGQSFNFNGHDVQVEKINPDILQKA  247
            +F V    +  ++ + +    +       +  ++ AG+S  F+  +    K   D    +
Sbjct  183  EFTVRQQDNFTQLDVQQHAVEVLLASAPAQKRIVNAGESLQFSASEFGAVKPLDD-ESTS  241

Query  248  WQRKKLVVNDMSLDQVLDLLESYQSSKFIYNRKSLTKYRVNAVLPLDDPDSAIQLLKDQL  307
            W +  L  +D  L +V+  L  Y++   +    ++   R++   PL + D+ + ++   L
Sbjct  242  WTKDILSFSDKPLGEVIATLTRYRNG-VLRCDPAVAGLRLSGTFPLKNTDAILNVIAQTL  300

Query  308  DLNVYTV  314
             + + ++
Sbjct  301  PVKIQSI  307



Lambda      K        H        a         alpha
   0.319    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85833


  Database: aeea41047f443d971979d8d537714c35.SwissProt.fasta
    Posted date:  May 29, 2024  12:28 PM
  Number of letters in database: 317
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40