BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d06f6311b9794efe36f6f598b9127086.SwissProt.fasta
           1 sequences; 502 total letters



Query= ACIAD1176

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q5WLU5 Lysine--tRNA ligase [Shouchella clausii (strain KSM-K16)]      36.2    8e-07


>Q5WLU5 Lysine--tRNA ligase [Shouchella clausii (strain KSM-K16)]
Length=502

 Score = 36.2 bits (82),  Expect = 8e-07
 Identities = 14/33 (42%), Positives = 21/33 (64%), Gaps = 0/33 (0%)

Query  141  VEADPSWQQVHLLGKVLEKLPIPFWVSIYSGEA  173
            VE  PSW++VH++  + EK  + FW  +  GEA
Sbjct  313  VELAPSWKRVHMVDAIKEKTGVDFWQQMSDGEA  345


 Score = 14.6 bits (26),  Expect = 5.1
 Identities = 5/13 (38%), Positives = 8/13 (62%), Gaps = 0/13 (0%)

Query  188  EKDKVFFQDGVGT  200
            E  +VF  +G+ T
Sbjct  252  EIGRVFRNEGIST  264


 Score = 14.6 bits (26),  Expect = 5.1
 Identities = 6/23 (26%), Positives = 8/23 (35%), Gaps = 0/23 (0%)

Query  62   PQWSIVDSKSWISEIDHTERWNK  84
            P W  V     I E    + W +
Sbjct  317  PSWKRVHMVDAIKEKTGVDFWQQ  339



Lambda      K        H        a         alpha
   0.321    0.138    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 124136


  Database: d06f6311b9794efe36f6f598b9127086.SwissProt.fasta
    Posted date:  May 8, 2024  10:29 PM
  Number of letters in database: 502
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40