BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1e87237f6c3ff9755f2b145dd1a3582b.SwissProt.fasta
5 sequences; 892 total letters
Query= ACIAD1246
Length=185
Score E
Sequences producing significant alignments: (Bits) Value
P75925 Cytochrome b561 homolog 2 [Escherichia coli (strain K12)] 104 1e-32
P0ABE6 Superoxide oxidase CybB [Shigella flexneri] 86.7 8e-26
P0ABE5 Superoxide oxidase CybB [Escherichia coli (strain K12)] 86.7 8e-26
Q9X6B2 Probable superoxide oxidase CybB [Yersinia pestis] 81.6 7e-24
P76345 Cytochrome b561 homolog 1 [Escherichia coli (strain K12)] 66.6 3e-18
>P75925 Cytochrome b561 homolog 2 [Escherichia coli (strain K12)]
Length=188
Score = 104 bits (260), Expect = 1e-32
Identities = 60/182 (33%), Positives = 94/182 (52%), Gaps = 3/182 (2%)
Query 2 SNSSQYYTRTAQFLHWIMAIIFISAWIIGFYSGNFLNYETDGSFKGDVITLHKNIATTII 61
+N+ + Y + HW+ AII + +G + Y DG + LHK+I ++
Sbjct 4 TNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYY--DGWYH-KAPELHKSIGILLM 60
Query 62 FLVMIRIFWRYTHPTPELPATMSPLMKKLAHLGHLALYVILIALPISGCFYSWSAGHPAP 121
++IR+ WR P P + SP+ + A GHLALY++L A+ ISG S + G P
Sbjct 61 MGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLFAIGISGYLISTADGKPIS 120
Query 122 VLYLFNIPQLIGENPEIMAIAKPVHVYLSWFAGLMVAGHILAALKHHFIDKDNVLKSMIK 181
V F++P + + A +H +L+W ++ H ALKHHFIDKD+ LK M+
Sbjct 121 VFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRMLG 180
Query 182 QS 183
+S
Sbjct 181 KS 182
>P0ABE6 Superoxide oxidase CybB [Shigella flexneri]
Length=176
Score = 86.7 bits (213), Expect = 8e-26
Identities = 52/177 (29%), Positives = 90/177 (51%), Gaps = 6/177 (3%)
Query 8 YTRTAQFLHWIMAIIFISAWIIGFYSGNFLNYETDGSFKGDVITLHKNIATTIIFLVMIR 67
Y+R +HW++ ++ I+A+ + G F S + + +H + +I+ L+++R
Sbjct 5 YSRLQISIHWLVFLLVIAAYCAMEFRGFFPR-----SDRPLINMIHVSCGISILVLMVVR 59
Query 68 IFWRYTHPTPELPATMSPLMKKLAHLGHLALYVILIALPISGCFYSWSAGHPAPVLYLFN 127
+ R +PTP + P+M LAHLGHL +Y++ IALP+ G ++ G+P +
Sbjct 60 LLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPW-FAFGLT 118
Query 128 IPQLIGENPEIMAIAKPVHVYLSWFAGLMVAGHILAALKHHFIDKDNVLKSMIKQSR 184
+P N E + K H L+ ++ H AAL HH+ KDN L M+ + R
Sbjct 119 MPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKR 175
>P0ABE5 Superoxide oxidase CybB [Escherichia coli (strain K12)]
Length=176
Score = 86.7 bits (213), Expect = 8e-26
Identities = 52/177 (29%), Positives = 90/177 (51%), Gaps = 6/177 (3%)
Query 8 YTRTAQFLHWIMAIIFISAWIIGFYSGNFLNYETDGSFKGDVITLHKNIATTIIFLVMIR 67
Y+R +HW++ ++ I+A+ + G F S + + +H + +I+ L+++R
Sbjct 5 YSRLQISIHWLVFLLVIAAYCAMEFRGFFPR-----SDRPLINMIHVSCGISILVLMVVR 59
Query 68 IFWRYTHPTPELPATMSPLMKKLAHLGHLALYVILIALPISGCFYSWSAGHPAPVLYLFN 127
+ R +PTP + P+M LAHLGHL +Y++ IALP+ G ++ G+P +
Sbjct 60 LLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVMMYNRGNPW-FAFGLT 118
Query 128 IPQLIGENPEIMAIAKPVHVYLSWFAGLMVAGHILAALKHHFIDKDNVLKSMIKQSR 184
+P N E + K H L+ ++ H AAL HH+ KDN L M+ + R
Sbjct 119 MPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHYFWKDNTLLRMMPRKR 175
>Q9X6B2 Probable superoxide oxidase CybB [Yersinia pestis]
Length=176
Score = 81.6 bits (200), Expect = 7e-24
Identities = 50/170 (29%), Positives = 87/170 (51%), Gaps = 6/170 (4%)
Query 15 LHWIMAIIFISAWIIGFYSGNFLNYETDGSFKGDVITLHKNIATTIIFLVMIRIFWRYTH 74
+HW++ ++ I AW S L S++ + +H + I+ L+M RI + +
Sbjct 12 IHWLVLLLVIIAW-----SSIELRGFAPRSYQPWMKMIHFSCGIAILVLMMTRILIQLRY 66
Query 75 PTPELPATMSPLMKKLAHLGHLALYVILIALPISGCFYSWSAGHPAPVLYLFNIPQLIGE 134
PTP + SP++ LAH+GH +Y++ IALPI G + G + + + +P
Sbjct 67 PTPPIVPKPSPMIVGLAHVGHWVIYLLFIALPIIGIAILYCRG-SSWIAFGLIMPHAEQA 125
Query 135 NPEIMAIAKPVHVYLSWFAGLMVAGHILAALKHHFIDKDNVLKSMIKQSR 184
N ++ K H+ L+ + ++ H LAAL HH++ KDN L M+ + R
Sbjct 126 NFDLADTLKAYHLLLANMSYFVIGLHALAALLHHYVLKDNTLLRMMPKKR 175
>P76345 Cytochrome b561 homolog 1 [Escherichia coli (strain K12)]
Length=176
Score = 66.6 bits (161), Expect = 3e-18
Identities = 47/181 (26%), Positives = 81/181 (45%), Gaps = 12/181 (7%)
Query 8 YTRTAQFLHWI----MAIIFISAWIIGFYSGNFLNYETDGSFKGDVITLHKNIATTIIFL 63
+++T +LHWI +AI + + + G++ Y + H N + L
Sbjct 4 FSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLL-------MRETHYNAGIFVWVL 56
Query 64 VMIRIFWRYTHPTPELPATMSPLMKKLAHLGHLALYVILIALPISGCFYSWSAGHPAPVL 123
+ R+ ++ + P + K A L H+ LY+ +ALP+ G +G L
Sbjct 57 MFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLGIALMAYSGKSWSFL 116
Query 124 YLFNIPQLIGENPEIMAIAKPVHVYLSWFAGLMVAGHILAALKHHFIDKDNVLKSMIKQS 183
FN+ + N EI A+ K +H + ++A H AAL HH+I KDN L M+ +
Sbjct 117 G-FNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHHYIQKDNTLLRMMPRR 175
Query 184 R 184
+
Sbjct 176 K 176
Lambda K H a alpha
0.331 0.142 0.462 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 115010
Database: 1e87237f6c3ff9755f2b145dd1a3582b.SwissProt.fasta
Posted date: May 20, 2024 1:37 PM
Number of letters in database: 892
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
