BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: fa120567d0576d9af5ebac641b21bd66.SwissProt.fasta
           4 sequences; 536 total letters



Query= ACIAD1263

Length=142
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ADX4 Protein YhfA [Shigella flexneri]                               137     5e-47
P0ADX2 Protein YhfA [Escherichia coli O6:H1 (strain CFT073 / ATCC...  137     5e-47
P0ADX3 Protein YhfA [Escherichia coli O157:H7]                        137     5e-47
P0ADX1 Protein YhfA [Escherichia coli (strain K12)]                   137     5e-47


>P0ADX4 Protein YhfA [Shigella flexneri]
Length=134

 Score = 137 bits (345),  Expect = 5e-47
 Identities = 64/137 (47%), Positives = 96/137 (70%), Gaps = 5/137 (4%)

Query  1    MQTSIHWIENVAFEAKSESGHSITMDGSAAYGGENRGPRPMELILMGLGGCASFDIVTIL  60
            MQ  + W+E + F  +S SGH I MDG++     ++ P PME++LM  GGC++ D+V+IL
Sbjct  1    MQARVKWVEGLTFLGESASGHQILMDGNSG----DKAPSPMEMVLMAAGGCSAIDVVSIL  56

Query  61   KKARQDVTDVVCQLQAERADTIPAVFTKIHLHFVVTGKQIKEKQVAKAIELSAEKYCSAS  120
            +K RQDV D   +L +ER +  P +FT I+LHF+VTG+ +K+  VA+A++LSAEKYCS +
Sbjct  57   QKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVA  116

Query  121  KMLTDGGVVITHDFEII  137
             ML +  V ITH +E++
Sbjct  117  LML-EKAVNITHSYEVV  132


>P0ADX2 Protein YhfA [Escherichia coli O6:H1 (strain CFT073 / 
ATCC 700928 / UPEC)]
Length=134

 Score = 137 bits (345),  Expect = 5e-47
 Identities = 64/137 (47%), Positives = 96/137 (70%), Gaps = 5/137 (4%)

Query  1    MQTSIHWIENVAFEAKSESGHSITMDGSAAYGGENRGPRPMELILMGLGGCASFDIVTIL  60
            MQ  + W+E + F  +S SGH I MDG++     ++ P PME++LM  GGC++ D+V+IL
Sbjct  1    MQARVKWVEGLTFLGESASGHQILMDGNSG----DKAPSPMEMVLMAAGGCSAIDVVSIL  56

Query  61   KKARQDVTDVVCQLQAERADTIPAVFTKIHLHFVVTGKQIKEKQVAKAIELSAEKYCSAS  120
            +K RQDV D   +L +ER +  P +FT I+LHF+VTG+ +K+  VA+A++LSAEKYCS +
Sbjct  57   QKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVA  116

Query  121  KMLTDGGVVITHDFEII  137
             ML +  V ITH +E++
Sbjct  117  LML-EKAVNITHSYEVV  132


>P0ADX3 Protein YhfA [Escherichia coli O157:H7]
Length=134

 Score = 137 bits (345),  Expect = 5e-47
 Identities = 64/137 (47%), Positives = 96/137 (70%), Gaps = 5/137 (4%)

Query  1    MQTSIHWIENVAFEAKSESGHSITMDGSAAYGGENRGPRPMELILMGLGGCASFDIVTIL  60
            MQ  + W+E + F  +S SGH I MDG++     ++ P PME++LM  GGC++ D+V+IL
Sbjct  1    MQARVKWVEGLTFLGESASGHQILMDGNSG----DKAPSPMEMVLMAAGGCSAIDVVSIL  56

Query  61   KKARQDVTDVVCQLQAERADTIPAVFTKIHLHFVVTGKQIKEKQVAKAIELSAEKYCSAS  120
            +K RQDV D   +L +ER +  P +FT I+LHF+VTG+ +K+  VA+A++LSAEKYCS +
Sbjct  57   QKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVA  116

Query  121  KMLTDGGVVITHDFEII  137
             ML +  V ITH +E++
Sbjct  117  LML-EKAVNITHSYEVV  132


>P0ADX1 Protein YhfA [Escherichia coli (strain K12)]
Length=134

 Score = 137 bits (345),  Expect = 5e-47
 Identities = 64/137 (47%), Positives = 96/137 (70%), Gaps = 5/137 (4%)

Query  1    MQTSIHWIENVAFEAKSESGHSITMDGSAAYGGENRGPRPMELILMGLGGCASFDIVTIL  60
            MQ  + W+E + F  +S SGH I MDG++     ++ P PME++LM  GGC++ D+V+IL
Sbjct  1    MQARVKWVEGLTFLGESASGHQILMDGNSG----DKAPSPMEMVLMAAGGCSAIDVVSIL  56

Query  61   KKARQDVTDVVCQLQAERADTIPAVFTKIHLHFVVTGKQIKEKQVAKAIELSAEKYCSAS  120
            +K RQDV D   +L +ER +  P +FT I+LHF+VTG+ +K+  VA+A++LSAEKYCS +
Sbjct  57   QKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVA  116

Query  121  KMLTDGGVVITHDFEII  137
             ML +  V ITH +E++
Sbjct  117  LML-EKAVNITHSYEVV  132



Lambda      K        H        a         alpha
   0.323    0.136    0.394    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 51920


  Database: fa120567d0576d9af5ebac641b21bd66.SwissProt.fasta
    Posted date:  May 19, 2024  8:18 PM
  Number of letters in database: 536
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40