BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 825118572eb23fdbd79248f27dce2456.SwissProt.fasta
4 sequences; 1,046 total letters
Query= ACIAD1277
Length=296
Score E
Sequences producing significant alignments: (Bits) Value
P9WLB5 Universal stress protein Rv2319c [Mycobacterium tuberculos... 147 2e-46
P9WLB4 Universal stress protein MT2382 [Mycobacterium tuberculosi... 147 2e-46
P64996 Universal stress protein Mb2346c [Mycobacterium bovis (str... 147 2e-46
Q57951 Universal stress protein MJ0531 [Methanocaldococcus jannas... 38.9 1e-07
>P9WLB5 Universal stress protein Rv2319c [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=292
Score = 147 bits (370), Expect = 2e-46
Identities = 93/294 (32%), Positives = 145/294 (49%), Gaps = 6/294 (2%)
Query 1 MKFLVGYSNDSSGKDALKLGVALAEMTQGKLIVCHIVAKTWHNIALAKFDEDYDQFLCDE 60
M +VGY G AL L V +A M + L V IV + W +LA+ D +Y+ +
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AQKALDDAKL---AVPSHIEARYIARTALSISEGLKQTAKELSVDCMVISGARIAIKGQF 117
A + +A+ + IE Y R S+S GL +EL + +V+ + +
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 118 FSGTVADELLNQLSLPVALAPKGFAKNQGFTSPLTRLSCAVSGSDQSCNLAISAGEWAEI 177
G+ AD LL+ +PVA+ P+ + + +T LTRLSC S + S ++ G A
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRY---RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASR 177
Query 178 FNVPLRFVTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIG 237
+ VP+R +TFAVR R + P G AE V+ W Q + + + L++
Sbjct 178 YGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV 237
Query 238 DGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLP 291
G W +++ + DWQ E+L +GT+ G +V +G + KIIRY+ VP LVLP
Sbjct 238 TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
Score = 41.6 bits (96), Expect = 2e-08
Identities = 30/113 (27%), Positives = 55/113 (49%), Gaps = 8/113 (7%)
Query 185 VTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIGDGPTWKE 244
V VR TP+ A DAE + W EQ+ A A+ Q + + +E+
Sbjct 33 VATIVRRHWPTPSLARVDAEYEL---WSEQLAAASAREAQRYLRRLADGIEVSYHHRAHR 89
Query 245 SIQS-----IDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLPR 292
S+ + ++ +E+L++G+ SG +VL+G A++++ + VP + PR
Sbjct 90 SVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
>P9WLB4 Universal stress protein MT2382 [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=292
Score = 147 bits (370), Expect = 2e-46
Identities = 93/294 (32%), Positives = 145/294 (49%), Gaps = 6/294 (2%)
Query 1 MKFLVGYSNDSSGKDALKLGVALAEMTQGKLIVCHIVAKTWHNIALAKFDEDYDQFLCDE 60
M +VGY G AL L V +A M + L V IV + W +LA+ D +Y+ +
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AQKALDDAKL---AVPSHIEARYIARTALSISEGLKQTAKELSVDCMVISGARIAIKGQF 117
A + +A+ + IE Y R S+S GL +EL + +V+ + +
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 118 FSGTVADELLNQLSLPVALAPKGFAKNQGFTSPLTRLSCAVSGSDQSCNLAISAGEWAEI 177
G+ AD LL+ +PVA+ P+ + + +T LTRLSC S + S ++ G A
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRY---RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASR 177
Query 178 FNVPLRFVTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIG 237
+ VP+R +TFAVR R + P G AE V+ W Q + + + L++
Sbjct 178 YGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV 237
Query 238 DGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLP 291
G W +++ + DWQ E+L +GT+ G +V +G + KIIRY+ VP LVLP
Sbjct 238 TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
Score = 41.6 bits (96), Expect = 2e-08
Identities = 30/113 (27%), Positives = 55/113 (49%), Gaps = 8/113 (7%)
Query 185 VTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIGDGPTWKE 244
V VR TP+ A DAE + W EQ+ A A+ Q + + +E+
Sbjct 33 VATIVRRHWPTPSLARVDAEYEL---WSEQLAAASAREAQRYLRRLADGIEVSYHHRAHR 89
Query 245 SIQS-----IDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLPR 292
S+ + ++ +E+L++G+ SG +VL+G A++++ + VP + PR
Sbjct 90 SVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
>P64996 Universal stress protein Mb2346c [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=292
Score = 147 bits (370), Expect = 2e-46
Identities = 93/294 (32%), Positives = 145/294 (49%), Gaps = 6/294 (2%)
Query 1 MKFLVGYSNDSSGKDALKLGVALAEMTQGKLIVCHIVAKTWHNIALAKFDEDYDQFLCDE 60
M +VGY G AL L V +A M + L V IV + W +LA+ D +Y+ +
Sbjct 1 MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLARVDAEYELWSEQL 60
Query 61 AQKALDDAKL---AVPSHIEARYIARTALSISEGLKQTAKELSVDCMVISGARIAIKGQF 117
A + +A+ + IE Y R S+S GL +EL + +V+ + +
Sbjct 61 AAASAREAQRYLRRLADGIEVSYHHRAHRSVSAGLLDVVEELEAEVLVLGSFPSGRRARV 120
Query 118 FSGTVADELLNQLSLPVALAPKGFAKNQGFTSPLTRLSCAVSGSDQSCNLAISAGEWAEI 177
G+ AD LL+ +PVA+ P+ + + +T LTRLSC S + S ++ G A
Sbjct 121 LIGSTADRLLHSSPVPVAITPRRY---RCYTDRLTRLSCGYSATSGSVDVVRRCGHLASR 177
Query 178 FNVPLRFVTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIG 237
+ VP+R +TFAVR R + P G AE V+ W Q + + + L++
Sbjct 178 YGVPMRVITFAVRGRTMYPPEVGLHAEASVLEAWAAQARELLEKLRINGVVSEDVVLQVV 237
Query 238 DGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLP 291
G W +++ + DWQ E+L +GT+ G +V +G + KIIRY+ VP LVLP
Sbjct 238 TGNGWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVLP 291
Score = 41.6 bits (96), Expect = 2e-08
Identities = 30/113 (27%), Positives = 55/113 (49%), Gaps = 8/113 (7%)
Query 185 VTFAVRDRDITPTAAGFDAENMVINEWREQIEAEYAQATQHWESDVPISLEIGDGPTWKE 244
V VR TP+ A DAE + W EQ+ A A+ Q + + +E+
Sbjct 33 VATIVRRHWPTPSLARVDAEYEL---WSEQLAAASAREAQRYLRRLADGIEVSYHHRAHR 89
Query 245 SIQS-----IDWQASELLIVGTTTSGIFKQVLVGKNAEKIIRYASVPRLVLPR 292
S+ + ++ +E+L++G+ SG +VL+G A++++ + VP + PR
Sbjct 90 SVSAGLLDVVEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPR 142
>Q57951 Universal stress protein MJ0531 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=170
Score = 38.9 bits (89), Expect = 1e-07
Identities = 34/139 (24%), Positives = 68/139 (49%), Gaps = 13/139 (9%)
Query 160 GSDQSCNLAISAGEWAEIFNVPLRFVTFAVRDRDITPTAAGFDAENM------VINEWRE 213
GSD S A A A+ F+ + +A+ D++P G AE ++ E +
Sbjct 35 GSDVSLEAAKHAINIAKEFDAEV----YAIYVVDVSPFV-GLPAEGSWELISELLKEEGQ 89
Query 214 QIEAEYAQATQHWESDVPISLEIGDGPTWKESIQSIDWQASELLIVGTTTSGIFKQVLVG 273
+ + + + W V I E+ +G E ++ + + ++L+++GTT +++L+G
Sbjct 90 EALKKVKKMAEEW--GVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLG 147
Query 274 KNAEKIIRYASVPRLVLPR 292
AE++I+ A P LV+ +
Sbjct 148 SVAERVIKNAHCPVLVVKK 166
Lambda K H a alpha
0.320 0.133 0.392 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 236466
Database: 825118572eb23fdbd79248f27dce2456.SwissProt.fasta
Posted date: May 9, 2024 9:42 PM
Number of letters in database: 1,046
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
