BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 840f0f798ea3565ab7e020eacf3faac1.SwissProt.fasta
19 sequences; 3,132 total letters
Query= ACIAD1283
Length=141
Score E
Sequences producing significant alignments: (Bits) Value
Q980W9 HTH-type transcriptional regulator LysM [Saccharolobus sol... 79.3 2e-23
Q9V1E5 Uncharacterized HTH-type transcriptional regulator PYRAB04... 74.3 2e-21
O57880 Uncharacterized HTH-type transcriptional regulator PH0140 ... 73.9 4e-21
Q8U067 Uncharacterized HTH-type transcriptional regulator PF1734 ... 72.8 9e-21
Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01... 72.8 1e-20
Q976J7 HTH-type transcriptional regulator LysM [Sulfurisphaera to... 71.6 2e-20
Q8U445 Uncharacterized HTH-type transcriptional regulator PF0250 ... 67.8 8e-19
O59579 Uncharacterized HTH-type transcriptional regulator PH1916 ... 67.0 2e-18
O59309 Uncharacterized HTH-type transcriptional regulator PH1692 ... 66.2 3e-18
O05217 Uncharacterized HTH-type transcriptional regulator YwrC [B... 65.9 5e-18
Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcu... 64.3 1e-17
P0ACI6 Regulatory protein AsnC [Escherichia coli (strain K12)] 59.3 1e-15
Q52710 Proline dehydrogenase transcriptional activator [Rhodobact... 58.9 2e-15
B0R4X4 HTH-type transcriptional regulator LrpA1 [Halobacterium sa... 57.8 5e-15
P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furios... 54.7 7e-14
Q971S5 Homocitrate synthase [Sulfurisphaera tokodaii (strain DSM ... 50.1 1e-11
P42179 Bkd operon transcriptional regulator [Pseudomonas putida] 47.0 7e-11
P50337 Uncharacterized HTH-type transcriptional regulator y4sM [S... 45.8 1e-10
P56901 Leucine-responsive regulatory protein [Rhizobium meliloti ... 45.8 2e-10
>Q980W9 HTH-type transcriptional regulator LysM [Saccharolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)]
Length=142
Score = 79.3 bits (194), Expect = 2e-23
Identities = 44/141 (31%), Positives = 83/141 (59%), Gaps = 8/141 (6%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++++D +IL +L+ NAR T +A ++KVS A I+KRIE + QGII +T+ + +E
Sbjct 6 IDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELENEI 65
Query 61 NMIRAWMNIMVEGN---KASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL 117
I +MV+ + +++ P V ++ T G +D+LV ++ N+ S ++ +
Sbjct 66 RAI-----VMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTI 120
Query 118 ERIRTINGIYNTETSILLSTY 138
+ IR+I G+ T ++I+L T+
Sbjct 121 DEIRSIQGVVGTNSTIILRTW 141
>Q9V1E5 Uncharacterized HTH-type transcriptional regulator PYRAB04820
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=147
Score = 74.3 bits (181), Expect = 2e-21
Identities = 36/139 (26%), Positives = 79/139 (57%), Gaps = 0/139 (0%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++ D +I+G+L ++R+S ++A ++ V+ TI RI+ +E G+I G+T+++ +
Sbjct 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKILERI 120
+ A M I +G K + R + D V ++ G++D++V K +N ++ ++ +
Sbjct 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Query 121 RTINGIYNTETSILLSTYK 139
+I+G+ T T ++L K
Sbjct 122 LSIDGVEKTNTHVVLEVVK 140
>O57880 Uncharacterized HTH-type transcriptional regulator PH0140
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=158
Score = 73.9 bits (180), Expect = 4e-21
Identities = 42/140 (30%), Positives = 78/140 (56%), Gaps = 1/140 (1%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++ D IL LL+++ RMS ++++ ++ V +T++ R+ + +G+I + I P
Sbjct 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKAG 71
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDK-ILER 119
I A++ + E K V+ EL P V L G D+ +++ ++L ++ ILE+
Sbjct 72 YEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFILEK 131
Query 120 IRTINGIYNTETSILLSTYK 139
+ I+GI +TETSIL S K
Sbjct 132 MAKIDGIKSTETSILTSVKK 151
>Q8U067 Uncharacterized HTH-type transcriptional regulator PF1734
[Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM
8422 / Vc1)]
Length=148
Score = 72.8 bits (177), Expect = 9e-21
Identities = 37/139 (27%), Positives = 77/139 (55%), Gaps = 0/139 (0%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++D D +IL LL +++R+S ++A K+ V+ TI RI+ +E+ G+I G+TV++
Sbjct 3 IDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEKLG 62
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKILERI 120
+ A + I +G K + R + D V ++ G++D++V K + ++ ++ +
Sbjct 63 YELTAIIGIKAQGKKIREIERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVKSV 122
Query 121 RTINGIYNTETSILLSTYK 139
+++G+ T T + L K
Sbjct 123 LSVDGVEKTNTHVALEIVK 141
>Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01370
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=158
Score = 72.8 bits (177), Expect = 1e-20
Identities = 43/140 (31%), Positives = 77/140 (55%), Gaps = 1/140 (1%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++ D IL LL+++ RMS ++++ ++ V +T++ R+ + +G+I + I P
Sbjct 12 LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPFKAG 71
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDK-ILER 119
I A++ I E K V+ EL P V L G D+ +++ +L ++ ILE+
Sbjct 72 YEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFILEK 131
Query 120 IRTINGIYNTETSILLSTYK 139
+ I+GI +TETSIL S K
Sbjct 132 MAKIDGIRSTETSILTSVKK 151
>Q976J7 HTH-type transcriptional regulator LysM [Sulfurisphaera
tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)]
Length=140
Score = 71.6 bits (174), Expect = 2e-20
Identities = 39/141 (28%), Positives = 82/141 (58%), Gaps = 8/141 (6%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++++D +IL +LR NAR T +A ++K+S A ++KRIE + G+I +T+ + +E
Sbjct 4 VDESDLKILEILRKNARTPYTSIAKELKISEAAVRKRIEKLIKMGVIKRFTIDYELENEI 63
Query 61 NMIRAWMNIMVEGN---KASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL 117
I +MV+ N + +++ V ++ T G +D+L ++ N++S +K +
Sbjct 64 RAI-----VMVKTNPQIPTPEISKKIIKIQGVEFVYETTGDYDILTVVRGTNISSINKTI 118
Query 118 ERIRTINGIYNTETSILLSTY 138
+ IR++ G+ +T ++I+L +
Sbjct 119 DDIRSLQGVLSTNSTIVLRVW 139
>Q8U445 Uncharacterized HTH-type transcriptional regulator PF0250
[Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM
8422 / Vc1)]
Length=150
Score = 67.8 bits (164), Expect = 8e-19
Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 8/145 (6%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++ TD +L L+ NAR ++ L+ K+ + R T+ RI+ + +GII +T IKPN ++
Sbjct 5 LDRTDKMLLEELKKNARENIAALSKKLGIPRTTVHYRIKRLLEEGIIEKFT--IKPNYKK 62
Query 61 NMIRAWMNIMV-----EGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDK 115
+ +++ G V ++ P V+ +H G+WD+L+++++ N K
Sbjct 63 LNLGTTAFVLIRYDPDSGLTQKEVAEQIAKIPGVYEVHIVAGEWDILLKVRAANAEEVGK 122
Query 116 I-LERIRTINGIYNTETSILLSTYK 139
I +E++R I G+ T T + T K
Sbjct 123 IVIEKLREIKGVGQTVTMVSFVTIK 147
>O59579 Uncharacterized HTH-type transcriptional regulator PH1916
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=150
Score = 67.0 bits (162), Expect = 2e-18
Identities = 40/145 (28%), Positives = 78/145 (54%), Gaps = 8/145 (6%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++ D ++L L++NAR ++ L+ K+ + R T+ RI+ + +GII +T IKPN ++
Sbjct 5 LDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFT--IKPNYKK 62
Query 61 NMIRAWMNIMV-----EGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDK 115
+ I++ G V ++ P V+ +H G+WDLL+++++ N +
Sbjct 63 LNLGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGR 122
Query 116 I-LERIRTINGIYNTETSILLSTYK 139
I ++++R I G+ T T + T K
Sbjct 123 IVIDKLREIRGVGQTVTMVSFVTVK 147
>O59309 Uncharacterized HTH-type transcriptional regulator PH1692
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=148
Score = 66.2 bits (160), Expect = 3e-18
Identities = 36/135 (27%), Positives = 72/135 (53%), Gaps = 0/135 (0%)
Query 5 DSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQNMIR 64
D +IL +L ++R S ++A + V+ TI RI+ +E+ G+I +TV++ S +
Sbjct 7 DRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESIGYDLT 66
Query 65 AWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKILERIRTIN 124
A + I +G K + R + D V ++ G++D++V K N ++ ++ + +I+
Sbjct 67 AIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFVKGVLSID 126
Query 125 GIYNTETSILLSTYK 139
G+ T T ++L K
Sbjct 127 GVEKTNTHVVLEIVK 141
>O05217 Uncharacterized HTH-type transcriptional regulator YwrC
[Bacillus subtilis (strain 168)]
Length=158
Score = 65.9 bits (159), Expect = 5e-18
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 1/141 (1%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++TD QIL +L + R+S TDL +V +SR +Q RI + G+I +T I P
Sbjct 12 LDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKIG 71
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL-ER 119
+ + N+ VE V +L +PAV +L+ G L + N ++ L +R
Sbjct 72 IHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTNDQEMEEFLTKR 131
Query 120 IRTINGIYNTETSILLSTYKA 140
+ + G+ + + +L+ YK+
Sbjct 132 LYPLRGVVSVDCQMLIKRYKS 152
>Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440)]
Length=140
Score = 64.3 bits (155), Expect = 1e-17
Identities = 42/140 (30%), Positives = 74/140 (53%), Gaps = 1/140 (1%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
M++ D +I+ +L + R S TD+A ++ S ++I+KR++ +E +G+I GYT I P+
Sbjct 1 MDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKIG 60
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASF-DKILER 119
+ A E +K V +EL P V + T+ G ++ E+ +++ F D I +
Sbjct 61 YNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFNK 120
Query 120 IRTINGIYNTETSILLSTYK 139
I I GI +I+L K
Sbjct 121 IGKIEGIKKICPAIILEQMK 140
>P0ACI6 Regulatory protein AsnC [Escherichia coli (strain K12)]
Length=152
Score = 59.3 bits (142), Expect = 1e-15
Identities = 40/138 (29%), Positives = 74/138 (54%), Gaps = 4/138 (3%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++ D IL L NAR + +LA + VS TI R+E M+ GIITG + + P
Sbjct 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query 61 NMIRAWMNIMVEGNK--ASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL- 117
+ ++ I+++ K SA+ + +D +TT G + + +++ ++ + +L
Sbjct 66 YDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT-GHYSIFIKVMCRSIDALQHVLI 124
Query 118 ERIRTINGIYNTETSILL 135
+I+TI+ I +TET I+L
Sbjct 125 NKIQTIDEIQSTETLIVL 142
>Q52710 Proline dehydrogenase transcriptional activator [Rhodobacter
capsulatus]
Length=154
Score = 58.9 bits (141), Expect = 2e-15
Identities = 39/139 (28%), Positives = 73/139 (53%), Gaps = 10/139 (7%)
Query 4 TDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQNMI 63
TD +IL L NAR+ VT+LA KV +S+ + RI ME G+ITGY + P +
Sbjct 8 TDRRILHELCANARIPVTELARKVGLSKTPVAARIRAMEEMGLITGYRAMLSPIRLGLIH 67
Query 64 RAWMNIMVEGNKA------SAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL 117
++ + + + +A +RE+ P V + G +D L++++S ++A + KI+
Sbjct 68 VTYVEVRLNDTRQKALEQFNAAVREI---PEVEECYMIAGGFDYLLKVRSHDIAEYRKIM 124
Query 118 -ERIRTINGIYNTETSILL 135
E++ + + T + + +
Sbjct 125 GEKLSALPHVAATSSYVAM 143
>B0R4X4 HTH-type transcriptional regulator LrpA1 [Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1)]
Length=142
Score = 57.8 bits (138), Expect = 5e-15
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 1/137 (1%)
Query 4 TDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQNMI 63
T+ +IL L ++A+ S +A + VS+ T++K I+ +E+ G+I GY+ + P
Sbjct 6 TEERILAALEEDAQASYAAIAERADVSKPTVRKYIDQLESDGVIVGYSADVDPKKLSGQS 65
Query 64 RAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVELK-SENLASFDKILERIRT 122
A + I V + R L+ +V L++++G L+ E++ ++ A D I + +
Sbjct 66 IAMVGIDVASEQYVEATRTLQELDSVQALYSSSGDHMLMAEVRAADGDALGDVISDEVLA 125
Query 123 INGIYNTETSILLSTYK 139
I+G+ S L K
Sbjct 126 IDGVTAAHPSFLQERLK 142
>P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=141
Score = 54.7 bits (130), Expect = 7e-14
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (4%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
+++ D IL +L +AR T++A K+ +S ++KR++ +E +GII GYT++I P
Sbjct 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query 61 NMIRAWMNIMVEGNKASAVIRELRIDPAVHTLHTTNGKWDLLVEL---KSENLASFDKIL 117
+ + + K V +L+ V L+ ++G ++ + E+LA I
Sbjct 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEI--IS 119
Query 118 ERIRTINGIYNTETSILLSTYK 139
+I I G+ +I+L K
Sbjct 120 NKIGKIEGVTKVCPAIILEKLK 141
>Q971S5 Homocitrate synthase [Sulfurisphaera tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7)]
Length=460
Score = 50.1 bits (118), Expect = 1e-11
Identities = 31/120 (26%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query 18 MSVTDLAAKVKVS-RATIQKRIEYMENQGIITGYTVRIKPNSEQNMIRAWMNIMVEGNK- 75
+ + + AK+K + + ++ +E +TG ++ KP I A +++ E N
Sbjct 341 VELDQVLAKIKSNPNVRFYRDVDLLEIAESVTGRVLKPKPPEN---IEALISVKCESNVY 397
Query 76 ASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKILERIRTINGIYNTETSILL 135
+AV R L + P V + +G +D+LV++++++ ++I+E IR + G+ +T TS++L
Sbjct 398 TTAVTRRLSVIPGVKEVMEISGDYDILVKVEAKDPNELNQIIENIRAVKGVSSTLTSLVL 457
Score = 17.3 bits (33), Expect = 1.9
Identities = 7/17 (41%), Positives = 11/17 (65%), Gaps = 0/17 (0%)
Query 36 KRIEYMENQGIITGYTV 52
KRI ++ +G+IT V
Sbjct 57 KRIMKLKREGLITSEIV 73
>P42179 Bkd operon transcriptional regulator [Pseudomonas putida]
Length=161
Score = 47.0 bits (110), Expect = 7e-11
Identities = 31/138 (22%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query 1 MNDTDSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQ 60
++ TD IL L++NAR++ +LA V +S R+ ME G+I + P +
Sbjct 4 LDRTDIGILNSLQENARITNAELARSVNLSPTPCFNRVRAMEELGVIRQQVTLLSPEALG 63
Query 61 NMIRAWMNIMVEGNKASAVIR---ELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKIL 117
+ ++++ +E ++ R E+ P V + G D L+ + ++ + ++ L
Sbjct 64 LDVNVFIHVSLEKQVEQSLHRFEEEIAERPEVMECYLMTGDPDYLLRVLLPSIQALERFL 123
Query 118 ERIRTINGIYNTETSILL 135
+ + + G+ N +S L
Sbjct 124 DYLTRLPGVANIRSSFAL 141
>P50337 Uncharacterized HTH-type transcriptional regulator y4sM
[Sinorhizobium fredii (strain NBRC 101917 / NGR234)]
Length=127
Score = 45.8 bits (107), Expect = 1e-10
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 10/114 (9%)
Query 26 KVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQNMIRAWMNIMVEG------NKASAV 79
+V +S + +RI+ ME G+I GYT + P ++ I +NI +E +K A
Sbjct 2 EVGLSPSACLRRIKLMEQAGVIRGYTALVDPTQSESTIAVIINITLERQTEEYLDKFEAA 61
Query 80 IRELRIDPAVHTLHTTNGKWDLLVELKSENLASFDKI-LERIRTINGIYNTETS 132
+R+ P + + G D ++ + EN +F++I E + T+ G+ +S
Sbjct 62 VRK---HPEIRECYLMTGGSDYMLRVDVENAGAFERIHKEVLSTLPGVLRIHSS 112
>P56901 Leucine-responsive regulatory protein [Rhizobium meliloti
(strain 1021)]
Length=156
Score = 45.8 bits (107), Expect = 2e-10
Identities = 33/139 (24%), Positives = 64/139 (46%), Gaps = 4/139 (3%)
Query 5 DSQILGLLRDNARMSVTDLAAKVKVSRATIQKRIEYMENQGIITGYTVRIKPNSEQNMIR 64
D +IL L+D+ R++ +LA +V +S +R+ +E G+I GY + ++ +
Sbjct 11 DMKILRELQDDGRITNVELAERVGISAPPCLRRVRKLEEAGVIRGYRALLNASALGYDLV 70
Query 65 AWMNIMVEGN---KASAVIRELRIDPAVHTLHTTNGKWDLLVELKSENLASF-DKILERI 120
A+ + ++ A P V +G+ D L++ +ENLASF D ++E +
Sbjct 71 AFCMVGLKHQSDANLKAFAARTASWPLVREAWMVSGESDFLLQCVAENLASFQDFVIEEL 130
Query 121 RTINGIYNTETSILLSTYK 139
+ T + + K
Sbjct 131 TATENVDTVRTMLTIRQVK 149
Lambda K H a alpha
0.321 0.133 0.372 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 261502
Database: 840f0f798ea3565ab7e020eacf3faac1.SwissProt.fasta
Posted date: May 20, 2024 12:21 PM
Number of letters in database: 3,132
Number of sequences in database: 19
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
