BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 8d5fe40d9bc5c626ac6dde56c004bb3e.SwissProt.fasta
15 sequences; 4,643 total letters
Query= ACIAD1300
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
P45105 HTH-type transcriptional regulator CysB [Haemophilus influ... 92.4 1e-24
O32255 Uncharacterized HTH-type transcriptional regulator YvbU [B... 91.7 1e-24
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat... 90.9 4e-24
P0A9F4 HTH-type transcriptional regulator CysB [Escherichia coli ... 84.0 1e-21
P0A9F5 HTH-type transcriptional regulator CysB [Escherichia coli ... 84.0 1e-21
P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli ... 84.0 1e-21
B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia ceno... 82.4 3e-21
P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumo... 82.0 5e-21
P20668 Transcriptional dual regulator GltC [Bacillus subtilis (st... 79.3 3e-20
B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia ceno... 73.9 3e-18
O34701 Uncharacterized HTH-type transcriptional regulator YoaU [B... 70.9 3e-17
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 67.4 4e-16
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 64.7 4e-15
Q47141 Hca operon transcriptional activator HcaR [Escherichia col... 58.9 3e-13
P0A9G2 Transcriptional activator protein NhaR [Escherichia coli (... 57.0 1e-12
>P45105 HTH-type transcriptional regulator CysB [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=323
Score = 92.4 bits (228), Expect = 1e-24
Identities = 73/297 (25%), Positives = 134/297 (45%), Gaps = 15/297 (5%)
Query 16 ISFRQMEYFVSTA-QHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
+ Q+ Y V Q+ ++ A+ ++ S P IS + +E EL +++F R S+T
Sbjct 1 MKMHQLRYIVEIVNQNLNVTEAANALYTSQPGISKQVRLLEDELGLEIFERHGKHIKSIT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G+KI+ +L + + A+A EY L++ + + ++ F+ +
Sbjct 61 PAGKKIISIARELLVKAQGIRAVADEYTRPNHGVLRIATTNTQARYMLPSVIERFSKKYP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPH-----VLVSEH 189
+ + GS ++ +AL+S +VD+AITT F+ +V +P + V+VS
Sbjct 121 DVSLHIHQGSPTQIHDALMSGEVDLAITTEAP-----YLFDDLVQIPCYWWNRAVIVSPE 175
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYYKDYCTD-LFTQHNLVPHIKDTYKNYDLVRTMVA 248
HPLAK+K + +E+L ++P++ + + D F ++P+I T + D+++T V
Sbjct 176 HPLAKVKELTIEELGKYPLVTYTFGFTGVSDLDYAFNSAGILPNIVFTATDADVIKTYVR 235
Query 249 DGWGYSMTNLRHKLEHTLNGKKLIRIMLEGDHAPVSIGIATISSVNSNEVTEKFMSY 305
G G + + HT L+ I P IA S FM Y
Sbjct 236 LGLG---VGIMASMAHTALDTDLVLIDASHLFRPSMTNIAFKHSTFLRNYMYDFMEY 289
>O32255 Uncharacterized HTH-type transcriptional regulator YvbU
[Bacillus subtilis (strain 168)]
Length=292
Score = 91.7 bits (226), Expect = 1e-24
Identities = 64/244 (26%), Positives = 120/244 (49%), Gaps = 12/244 (5%)
Query 16 ISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTN 75
++ Q++ FV A+ GS A + ++++ P++S AIS IE+EL VKL IR GL LT+
Sbjct 1 MTITQLKVFVKIAETGSFTKAGQALNMTQPAVSHAISAIEAELDVKLIIRDRRNGLMLTD 60
Query 76 IGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQ 135
G++IL +L + +A+ +GL + +G + ++ +F + +
Sbjct 61 TGKQILVHIREVLKGIEKVEQVAAAEKGLELGTIHIGTFSTASAYFMPKLISEFKQKYPK 120
Query 136 DDIRLVDGSHDELMNALLSNKVDMAI----TTNLQIDHNLICFEPIVSLPPHVLVSEHHP 191
++ L +G+ +E+ L + +D+ I T ++ H + V++ + HP
Sbjct 121 LELVLHEGTVNEVKEWLHTRMIDVGILLYPTEEMEYIH-------LKKDKMAVVLRDDHP 173
Query 192 LAKMKSVRLEDLTQFPMILHDSPYYKDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVADGW 251
LA ++ L+DL PMI+ D Y + D+F Q H T N + +M+ +G
Sbjct 174 LASHSAITLKDLDHEPMIVCDGGYESPF-IDMFRQAGATLHPAFTVYNINTSISMIREGL 232
Query 252 GYSM 255
G ++
Sbjct 233 GLAI 236
>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442
/ H16 / Stanier 337)]
Length=317
Score = 90.9 bits (224), Expect = 4e-24
Identities = 71/306 (23%), Positives = 145/306 (47%), Gaps = 7/306 (2%)
Query 10 TTVLNRISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHAR 69
++ L ++ RQ++ FV+ A+H S + A+E++H++ P++S + +ES + + LF R +
Sbjct 2 SSFLRALTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQ 61
Query 70 GLSLTNIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYS-DIVHD 128
L+LT G+++L ILG+ + + Q ++ +G + T ++ ++
Sbjct 62 -LTLTEPGDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGL--ISTSKYFAPKLLAG 118
Query 129 FNLLHQQDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPHVLVSE 188
F LH D+R+ +G+ + L+ L N +D+A+ + + + EPI + P ++ S
Sbjct 119 FTALHPGVDLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVS-EPIAAHPHVLVASP 177
Query 189 HHPLAKMKSVRLEDLTQFPMILHD-SPYYKDYCTDLFTQHNLVPHIKDTYKNYDLVRTMV 247
HPL K L++L +L + + +F H P T + + ++ V
Sbjct 178 RHPLHDAKGFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAV 237
Query 248 ADGWGYSMTNLRHKLEHTLNGKKLIRIMLEGDHAPVSIGIATISSVNSNEVTEKFMSYCK 307
G G S+ +L H L L ++ + + G +A +SS + +E +Y
Sbjct 238 MAGMGISLLSL-HTLGLELRTGEIGLLDVAGTPIERIWHVAHMSSKRLSPASESCRAYLL 296
Query 308 DFICEY 313
+ E+
Sbjct 297 EHTAEF 302
>P0A9F4 HTH-type transcriptional regulator CysB [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=324
Score = 84.0 bits (206), Expect = 1e-21
Identities = 56/244 (23%), Positives = 115/244 (47%), Gaps = 12/244 (5%)
Query 16 ISFRQMEYFVSTAQHG-SIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
+ +Q+ Y V H ++ +E ++ S P IS + +E EL +++F R +T
Sbjct 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G++I++ +L + A+ ++A E+ + +L + H +++ F +
Sbjct 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPH-----VLVSEH 189
+ + + GS ++ +A+ D AI T L +E +V LP + ++V+
Sbjct 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEA-----LHLYEDLVMLPCYHWNRAIVVTPD 175
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVA 248
HPLA K++ +E+L Q+P++ + + + F + L P I T + D+++T V
Sbjct 176 HPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235
Query 249 DGWG 252
G G
Sbjct 236 LGLG 239
Score = 17.3 bits (33), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 263 EHTLNGKKLIRI 274
+H L GKK I I
Sbjct 175 DHPLAGKKAITI 186
>P0A9F5 HTH-type transcriptional regulator CysB [Escherichia coli
O157:H7]
Length=324
Score = 84.0 bits (206), Expect = 1e-21
Identities = 56/244 (23%), Positives = 115/244 (47%), Gaps = 12/244 (5%)
Query 16 ISFRQMEYFVSTAQHG-SIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
+ +Q+ Y V H ++ +E ++ S P IS + +E EL +++F R +T
Sbjct 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G++I++ +L + A+ ++A E+ + +L + H +++ F +
Sbjct 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPH-----VLVSEH 189
+ + + GS ++ +A+ D AI T L +E +V LP + ++V+
Sbjct 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEA-----LHLYEDLVMLPCYHWNRAIVVTPD 175
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVA 248
HPLA K++ +E+L Q+P++ + + + F + L P I T + D+++T V
Sbjct 176 HPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235
Query 249 DGWG 252
G G
Sbjct 236 LGLG 239
Score = 17.3 bits (33), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 263 EHTLNGKKLIRI 274
+H L GKK I I
Sbjct 175 DHPLAGKKAITI 186
>P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli
(strain K12)]
Length=324
Score = 84.0 bits (206), Expect = 1e-21
Identities = 56/244 (23%), Positives = 115/244 (47%), Gaps = 12/244 (5%)
Query 16 ISFRQMEYFVSTAQHG-SIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
+ +Q+ Y V H ++ +E ++ S P IS + +E EL +++F R +T
Sbjct 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G++I++ +L + A+ ++A E+ + +L + H +++ F +
Sbjct 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPH-----VLVSEH 189
+ + + GS ++ +A+ D AI T L +E +V LP + ++V+
Sbjct 121 RVSLHMHQGSPTQIADAVSKGNADFAIATEA-----LHLYEDLVMLPCYHWNRAIVVTPD 175
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVA 248
HPLA K++ +E+L Q+P++ + + + F + L P I T + D+++T V
Sbjct 176 HPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235
Query 249 DGWG 252
G G
Sbjct 236 LGLG 239
Score = 17.3 bits (33), Expect = 7.7
Identities = 7/12 (58%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 263 EHTLNGKKLIRI 274
+H L GKK I I
Sbjct 175 DHPLAGKKAITI 186
>B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC
13227 / J2315 / CF5610)]
Length=313
Score = 82.4 bits (202), Expect = 3e-21
Identities = 58/225 (26%), Positives = 101/225 (45%), Gaps = 1/225 (0%)
Query 29 QHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTNIGEKILKECLFIL 88
Q+ ++ A++ ++ S P +S AI +E EL V++F R R SLT G IL IL
Sbjct 15 QNFNLTEAAKALYTSQPGVSKAIIELEDELGVEIFTRHGKRVRSLTEPGRIILASVERIL 74
Query 89 GQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQDDIRLVDGSHDEL 148
+ +L + +Y Q L + H + +F + + ++ GS ++
Sbjct 75 QEVESLKRVGKDYAAQDQGNLTIAATHTQARYSLPAAIAEFKKRFPKVHLSILQGSPTQV 134
Query 149 MNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPHVLVSEHHPLAKMKSVRLEDLTQFPM 208
++ ++ D+AI T D+ + P +V HPL + K V L+DL Q+P+
Sbjct 135 AEMVIHDQADLAIATEAISDYKELVSLPCFQWHHAAVVPADHPLLERKPVTLDDLAQYPL 194
Query 209 ILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVADGWG 252
I +D + + F L P I + D+++T V G G
Sbjct 195 ITYDDAFAGRKKINHAFALRGLSPDIVLEAIDADVIKTYVELGLG 239
>P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumoniae]
Length=324
Score = 82.0 bits (201), Expect = 5e-21
Identities = 57/244 (23%), Positives = 112/244 (46%), Gaps = 12/244 (5%)
Query 16 ISFRQMEYFVSTAQHG-SIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
+ +Q+ Y V H ++ +E ++ S P IS + +E EL +++F R +T
Sbjct 1 MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G++I++ +L + A+ ++A E+ + +L V H ++ F +
Sbjct 61 PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPH-----VLVSEH 189
+ + + GS ++ A+ D AI T L ++ +V LP + ++V+
Sbjct 121 RVSLHMHQGSPTQIAEAVSKGNADFAIATEA-----LHLYDDLVMLPCYHWNRSIVVTPE 175
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVA 248
HPLA SV +E+L Q+P++ + + + F + L P I T + D+++T V
Sbjct 176 HPLATKGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVR 235
Query 249 DGWG 252
G G
Sbjct 236 LGLG 239
>P20668 Transcriptional dual regulator GltC [Bacillus subtilis
(strain 168)]
Length=300
Score = 79.3 bits (194), Expect = 3e-20
Identities = 57/241 (24%), Positives = 113/241 (47%), Gaps = 2/241 (1%)
Query 16 ISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTN 75
+ RQ+ YF+ A+ + A++ +HV+ +IS I+++E EL V LF R+ R + LT
Sbjct 1 MELRQLRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFERE-GRNIKLTP 59
Query 76 IGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQ 135
IG++ L + EY + +++G L + ++ F +
Sbjct 60 IGKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPH 119
Query 136 DDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPHVLVSEHHPLAKM 195
+ L GS+ L+ A+ + +D+A+ + + + I + + + + LV +HPLAK
Sbjct 120 VEFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAKQ 179
Query 196 KSVRLEDLTQFPMILHDSPY-YKDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVADGWGYS 254
K+V L DL +L + ++ D Q P + ++ D ++ +V+ G G +
Sbjct 180 KTVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGVT 239
Query 255 M 255
+
Sbjct 240 L 240
Score = 17.3 bits (33), Expect = 7.6
Identities = 7/17 (41%), Positives = 9/17 (53%), Gaps = 0/17 (0%)
Query 301 KFMSYCKDFICEYYHDH 317
K + Y K+ I EY H
Sbjct 73 KAIDYAKEQIDEYLDPH 89
>B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC
13227 / J2315 / CF5610)]
Length=308
Score = 73.9 bits (180), Expect = 3e-18
Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 2/239 (1%)
Query 16 ISFRQMEYF-VSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLT 74
++F+Q+ + + Q+ ++ + ++ S +S I +E EL V +FIR+ R LT
Sbjct 1 MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLT 60
Query 75 NIGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQ 134
G+ + + +L L +A ++ L V H ++ F +
Sbjct 61 EPGKAVHQLIERMLLDAENLRRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFP 120
Query 135 QDDIRLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPHVLVSEHHPLAK 194
+ + L GS ++ +L+ + D+ I+T + I P S V+V + HPL
Sbjct 121 KVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVTFPCYSWHHTVVVPKGHPLVG 180
Query 195 MKSVRLEDLTQFPMILHDSPYY-KDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVADGWG 252
+++ LE++ ++P+I +D + + + FTQ VP + T + D+++T V G G
Sbjct 181 RENLTLEEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMG 239
>O34701 Uncharacterized HTH-type transcriptional regulator YoaU
[Bacillus subtilis (strain 168)]
Length=290
Score = 70.9 bits (172), Expect = 3e-17
Identities = 58/255 (23%), Positives = 124/255 (49%), Gaps = 14/255 (5%)
Query 16 ISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTN 75
++ + FV + +I A++++ +S P++S AI ++ES L++KL IR GL LT+
Sbjct 3 MNMNHLHIFVKVGEKLNITEAAKELFISQPAVSKAIKNLESSLQLKLLIRDKHHGLMLTD 62
Query 76 IGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQ 135
IG++IL + G +Y +A+ L +++G ++ I + F +
Sbjct 63 IGKEILLLARQMKGIESKIYQVANRENKLLNGKVKIGSFPAVSTNIMPQAIAAFRSNYPL 122
Query 136 DDIRLVDGSHDELMNALLSNKVDMAITTN--LQIDHNLICFEPIVSLPPHVLVSEHHPLA 193
I L++G+ D++ + VD+ I + ++ L+C + +V++ P + L
Sbjct 123 IRIELIEGTSDQIKGWVEDRTVDIGIAASPFEPFENQLLCNDYMVAVIP----PQRDELK 178
Query 194 KMKSVRLEDLTQFPMILHDSPYYKDYCTDLFTQHNLVPHIKDTYKNYDLVRTMVADGWG- 252
K V LE T ++ ++ ++ F+Q+N+ T +N + + MV + G
Sbjct 179 LEKHVDLE--TYQDDLIFCKGGHEIAMSNAFSQYNIELKENLTVQNAETLINMVKNNLGI 236
Query 253 -----YSMTNLRHKL 262
++++++ H+L
Sbjct 237 GIISNFTLSSVPHQL 251
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 67.4 bits (163), Expect = 4e-16
Identities = 50/192 (26%), Positives = 92/192 (48%), Gaps = 2/192 (1%)
Query 19 RQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTNIGE 78
R + YF++ A+HGS A+ +HVS P++S I +E L V LF R R + LT+ GE
Sbjct 4 RHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRS-GRTIRLTDAGE 62
Query 79 KILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQDDI 138
+ L + A + LT+ +L++ T ++ DF + +
Sbjct 63 VWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITL 122
Query 139 RLVDGSHDELMNALLSNKVDMAITTNLQIDHNLICFEPIVSLPPHVLVSEHHPLAKMKSV 198
+L + S +++ + L +++D+ I L P+++ ++V++HHPLA + V
Sbjct 123 QLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAI-PLLTESLALVVAQHHPLAVHEQV 181
Query 199 RLEDLTQFPMIL 210
L L ++L
Sbjct 182 ALSRLHDEKLVL 193
Score = 17.3 bits (33), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 0/20 (0%)
Query 221 TDLFTQHNLVPHIKDTYKNY 240
T FT + + P + D Y Y
Sbjct 98 TPTFTSYFIGPLMADFYARY 117
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 64.7 bits (156), Expect = 4e-15
Identities = 67/267 (25%), Positives = 119/267 (45%), Gaps = 17/267 (6%)
Query 16 ISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTN 75
+ R ++ F + + GS A+E ++ S P+IS + +E +L V LF R + L LT
Sbjct 1 MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFER--GKSLQLTK 58
Query 76 IGEKILKECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFNLLHQQ 135
G+ + +L Q AL S+ + + +G LI+ +I+ DF + + +
Sbjct 59 AGKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPK 118
Query 136 DDIRLVDGSHDELMNALLSNKVDMAITTNLQ-IDHNLICFEPIVSLPPHVLVSEHHPLAK 194
+ + + LL +D A+ + I N + P +V+VS+ HPLA+
Sbjct 119 ITVNIKVDDANTCSQKLLDGTIDFAVCGEPELILENY--YHPFFYDTLNVIVSDQHPLAE 176
Query 195 MKSVRLEDLTQFPMILHDSPYYKDYCTDLFTQHNLVPHIKDTYKNYDLVRTM-----VAD 249
K+V L DL + I + + L + +L + + YK +L +M V +
Sbjct 177 KKAVHLSDLAEERFIFTPA----NCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVRE 232
Query 250 GWGYSM-TNLRHKLEHTLNGKKLIRIM 275
G S+ T+ H NG K+I I+
Sbjct 233 NIGISIFTSTAH--SKPFNGTKVIPIL 257
>Q47141 Hca operon transcriptional activator HcaR [Escherichia
coli (strain K12)]
Length=296
Score = 58.9 bits (141), Expect = 3e-13
Identities = 65/250 (26%), Positives = 107/250 (43%), Gaps = 20/250 (8%)
Query 16 ISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLSLTN 75
+ R + YFV+ AQ + A+EK+H S PS+S+ I +E+ + V L +R R ++LT
Sbjct 1 MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVRD-KRKVALTA 59
Query 76 IGEKILKECLFILGQTYALYALASEYRGLTQ--RALQVGCHHVLTPLIYSDIVHDFNLLH 133
GE L++ L IL Q A R + Q R L +G + ++ F L
Sbjct 60 AGECFLQDALAILEQAENAKLRA---RKIVQEDRQLTIGFVPSAEVNLLPKVLPMFRLRQ 116
Query 134 QQDDIRLVDGSHDELMNALLSNKVDMAI----TTNLQIDHNLICFEPIVSLPPHVLVSEH 189
I LV + + ++D+ + + +ID+ + EP+V V++
Sbjct 117 PDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELFDEPLV-----VVLPVD 171
Query 190 HPLAKMKSVRLEDLTQFPMILHDSPYYKDYCTDL----FTQHNLVPHIKDTYKNYDLVRT 245
HPLA K + L + D P Y + F Q N P+I N +
Sbjct 172 HPLAHEKEITAAQLDGVNFVSTD-PVYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMN 230
Query 246 MVADGWGYSM 255
+V G G ++
Sbjct 231 LVGMGLGVTL 240
>P0A9G2 Transcriptional activator protein NhaR [Escherichia coli
(strain K12)]
Length=301
Score = 57.0 bits (136), Expect = 1e-12
Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 6/152 (4%)
Query 13 LNRISFRQMEYFVSTAQHGSIIVASEKIHVSPPSISAAISHIESELKVKLFIRQHARGLS 72
++ I++ + YF + GS++ A+E ++++P +I+ I +E L+ KLF R+ RGL
Sbjct 3 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRK-GRGLE 61
Query 73 LTNIGEKILK--ECLFILGQTYALYALASEYRGLTQRALQVGCHHVLTPLIYSDIVHDFN 130
+ +GE + + + +F L Q YR + VG L+ + S +++
Sbjct 62 PSELGELVYRYADKMFTLSQEMLDIV---NYRKESNLLFDVGVADALSKRLVSSVLNAAV 118
Query 131 LLHQQDDIRLVDGSHDELMNALLSNKVDMAIT 162
+ + +R + +H+ L+ L +K+DM I+
Sbjct 119 VEGEPIHLRCFESTHEMLLEQLSQHKLDMIIS 150
Lambda K H a alpha
0.324 0.136 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1158229
Database: 8d5fe40d9bc5c626ac6dde56c004bb3e.SwissProt.fasta
Posted date: May 20, 2024 1:37 PM
Number of letters in database: 4,643
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
