BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 77c7bd686babfda3c42ab47092513c7e.SwissProt.fasta
20 sequences; 18,803 total letters
Query= ACIAD1395
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
P45128 Transcription-repair-coupling factor [Haemophilus influenz... 1094 0.0
P30958 Transcription-repair-coupling factor [Escherichia coli (st... 1090 0.0
O52236 Transcription-repair-coupling factor [Myxococcus xanthus] 729 0.0
P57381 Transcription-repair-coupling factor [Buchnera aphidicola ... 670 0.0
Q5HRQ2 Transcription-repair-coupling factor [Staphylococcus epide... 666 0.0
P37474 Transcription-repair-coupling factor [Bacillus subtilis (s... 665 0.0
Q8CMT1 Transcription-repair-coupling factor [Staphylococcus epide... 664 0.0
Q6GJG8 Transcription-repair-coupling factor [Staphylococcus aureu... 660 0.0
Q2G0R8 Transcription-repair-coupling factor [Staphylococcus aureu... 659 0.0
Q2FJD8 Transcription-repair-coupling factor [Staphylococcus aureu... 659 0.0
Q89AK2 Transcription-repair-coupling factor [Buchnera aphidicola ... 657 0.0
P9WMQ5 Transcription-repair-coupling factor [Mycobacterium tuberc... 603 0.0
B7UM74 ATP-dependent DNA helicase RecG [Escherichia coli O127:H6 ... 246 5e-72
P24230 ATP-dependent DNA helicase RecG [Escherichia coli (strain ... 244 2e-71
Q54900 ATP-dependent DNA helicase RecG [Streptococcus pneumoniae ... 243 5e-71
O50581 ATP-dependent DNA helicase RecG [Staphylococcus aureus (st... 231 8e-67
O50224 ATP-dependent DNA helicase RecG [Acidithiobacillus ferroox... 110 2e-27
Q50939 UvrABC system protein B [Neisseria gonorrhoeae] 60.5 7e-12
P05445 Primosomal protein N' [Rhodospirillum rubrum] 58.2 4e-11
Q56243 UvrABC system protein B [Thermus thermophilus (strain ATCC... 57.8 5e-11
>P45128 Transcription-repair-coupling factor [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=1146
Score = 1094 bits (2829), Expect = 0.0
Identities = 567/1129 (50%), Positives = 780/1129 (69%), Gaps = 13/1129 (1%)
Query 38 IGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKPTIFPDWEILPY 96
+G++ + AL EI +Q+ L V+VT +++ +L L E +FPDWE LPY
Sbjct 20 LGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQDVCLFPDWETLPY 79
Query 97 DRLSPHQDIVSERLAILSNMPQT--GVLLISASTLAQRVAPIGWVLGEHFDIQVGQKLDL 154
D SPHQ+I+S RL+ L ++ G+ L+ STL QR+ P ++ I+ G +L +
Sbjct 80 DTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQYLQHNVLLIKKGDRLVI 139
Query 155 EKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEIDTLKFFDPE 214
+K +L+L AGY V+ V +HGE+AVRG+++D++ G P R+D FDDEID+++ FD +
Sbjct 140 DKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFRLDFFDDEIDSIRTFDVD 199
Query 215 TQRTTENLKQFRILPAKEFPLKE-GRSIFRERYAEAFPTANPKKNPIYQDVLDGIASPGV 273
TQRT + + +LPA EFP + G FR ++ E F IYQ + G G+
Sbjct 200 TQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRRDPEHIYQQISKGTLISGI 259
Query 274 EFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRYESRRHNIDQP 333
E++ PLFF E + F YLP + + + ++D QRYE R+ + +P
Sbjct 260 EYWQPLFFA----EMATLFD-YLPEQTLFVDMENNQTQGERFYQDAKQRYEQRKVDPMRP 314
Query 334 ILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVDPKKEHPFEV 393
+LSPE L+L + V +LK +PRI +E + V NLPV+ ++ + +++ P
Sbjct 315 LLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALPEVTIQSQQKEPLGQ 374
Query 394 VTKYINEVNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLD 453
+ ++I VL E+ GRRE+L D L P ++ + +++++ +++ L+
Sbjct 375 LRQFIEHFKGNVLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIENEKFSLLVSS--LE 432
Query 454 RGLVLSSQL--AVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGV 511
+G ++ L A+I E L R+ QR R +++ ++ + L+R+L EL IG PVVH+D+GV
Sbjct 433 QGFIIEQSLPVAIIGEANLLGKRIQQRSRDKRKTINPDTLVRNLAELKIGQPVVHLDHGV 492
Query 512 GRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAW 571
GRY GL+TL+ E+L L+YA+ +K+YVPVT+LHLISRY GG + APLHKLG +AW
Sbjct 493 GRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDESAPLHKLGNEAW 552
Query 572 SKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIE 631
+K+++KA E+I DVAAELL + A+R++K GFAF+ D+ + QFS+ F +EET DQ AI
Sbjct 553 AKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQEMAIN 612
Query 632 ATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFK 691
A + DM K MDRLVCGDVGFGKTEVAMRAAFLAV N+KQVAVLVPTTLLAQQHYE+FK
Sbjct 613 AVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHYENFK 672
Query 692 DRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDE 751
DRFA+ P+ +EVLSRF + K ++ +E+L GKVDI++GTHKL+Q V+F+DLGL+I+DE
Sbjct 673 DRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDE 732
Query 752 EHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFV 811
EHRFGV KE+IK +RA++D+LTLTATPIPRTLNMA +G+RDLSII+TPPARRL++KTFV
Sbjct 733 EHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFV 792
Query 812 QEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMREREL 871
+++ D VREAILRE+LRGGQVY+LHN+V SIE TAE + LVPEARV V HGQMREREL
Sbjct 793 RQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMREREL 852
Query 872 EQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQA 931
E+VM FYH+ YNVLVCSTIIETGIDVP ANTII+ERAD GLAQLHQLRGRVGRSHHQA
Sbjct 853 ERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 912
Query 932 YAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAI 991
YAYLL P K + DAE+RLDA++ LGAGF+LAT DLEIRGAGELLG +QSG +++I
Sbjct 913 YAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSGQIESI 972
Query 992 GYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRI 1051
G+SLYME+L+ A KA+++G+ P+ + A+I L +PAL+PD+YLGDV+ RL FYKRI
Sbjct 973 GFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLGDVNMRLSFYKRI 1032
Query 1052 SNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLNSQGGYIEFS 1111
+ +++ +LD +++ELIDRFG LP + K L + +LRL E L + +ID +QGG+IEFS
Sbjct 1033 AAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRIDAGTQGGFIEFS 1092
Query 1112 QDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRIQFAHALL 1160
V IQL+QK+P YR +G + K L + R++F LL
Sbjct 1093 AKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDLL 1141
>P30958 Transcription-repair-coupling factor [Escherichia coli
(strain K12)]
Length=1148
Score = 1090 bits (2820), Expect = 0.0
Identities = 578/1141 (51%), Positives = 787/1141 (69%), Gaps = 16/1141 (1%)
Query 30 LKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKPTIF 88
+KAGE+R +G L G++ A L EI ++H +V++ + Q+ +L E+ +F
Sbjct 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70
Query 89 PDWEILPYDRLSPHQDIVSERLAILSNMP--QTGVLLISASTLAQRVAPIGWVLGEHFDI 146
DWE LPYD SPHQDI+S RL+ L +P Q GVL++ +TL QRV P ++ G +
Sbjct 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130
Query 147 QVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEID 206
+ GQ+L + + +L AGY VD V +HGE+A RG+++D++ G E P R+D FDDEID
Sbjct 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190
Query 207 TLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNP--IYQD 263
+L+ FD ++QRT E ++ +LPA EFP K +FR ++ + F K++P IYQ
Sbjct 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV---KRDPEHIYQQ 247
Query 264 VLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRY 323
V G G+E++ PLFF + SYF P N +++ L+ S D + R+
Sbjct 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYF----PANTLLVNTGDLETSAERFQADTLARF 303
Query 324 ESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAERVGGINLPVSQPVKLAV 383
E+R + +P+L P+ L+L + + +LK +PR+ + +E + + NL + LAV
Sbjct 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363
Query 384 DPKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQY 443
+++ P + + K++ + PV+ ES GRRE+L + L + D +
Sbjct 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423
Query 444 AIAITNAPLDRGLVLSSQ-LAVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGA 502
+ I A + G V + + LA+I E+ L RV +RR+ ++ ++ + LIR+L EL IG
Sbjct 424 YLMIGAA--EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481
Query 503 PVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAP 562
PVVH+++GVGRYAG+ TLE E+L L YA+ AK+YVPV++LHLISRY+GG + AP
Sbjct 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541
Query 563 LHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEE 622
LHKLG DAWS+A++KA E++ DVAAELL I A+R +K GFAF+ D+ Y F F +E
Sbjct 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601
Query 623 TLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLL 682
T DQA AI A L DM MDRLVCGDVGFGKTEVAMRAAFLAV N+KQVAVLVPTTLL
Sbjct 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661
Query 683 AQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFH 742
AQQHY++F+DRFA+WP+RIE++SRF S K + + ++ GK+DI++GTHKLLQ V+F
Sbjct 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721
Query 743 DLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPA 802
DLGL+IVDEEHRFGVR KERIKAMRA+VD+LTLTATPIPRTLNMA SGMRDLSIIATPPA
Sbjct 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781
Query 803 RRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVA 862
RRLAVKTFV+E+ VREAILRE+LRGGQVY+L+N+V++I++ AE + LVPEAR+A+
Sbjct 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841
Query 863 HGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRG 922
HGQMRERELE+VM F+H+ +NVLVC+TIIETGID+P ANTII+ERAD GLAQLHQLRG
Sbjct 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901
Query 923 RVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGE 982
RVGRSHHQAYA+LL P K + DA+KRL+AI LGAGF LAT DLEIRGAGELLGE
Sbjct 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961
Query 983 QQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVH 1042
+QSGSM+ IG+SLYME+LE A A++ G+ P+ + S E+ L MP+L+PD+++ DV+
Sbjct 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021
Query 1043 QRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLN 1102
RL FYKRI++ T+ +L+ I++ELIDRFG LP + L + +LR QA++LGI K++ N
Sbjct 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081
Query 1103 SQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRIQFAHALLSK 1162
+GG IEF++ V +I L+QKQP +YR++G RLK L E RI++ + +
Sbjct 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141
Query 1163 L 1163
L
Sbjct 1142 L 1142
>O52236 Transcription-repair-coupling factor [Myxococcus xanthus]
Length=1201
Score = 729 bits (1881), Expect = 0.0
Identities = 437/1158 (38%), Positives = 675/1158 (58%), Gaps = 71/1158 (6%)
Query 29 QLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESELEFYG------ 82
+L+AG++ L G++ + + LV V + + L ++L F+
Sbjct 37 ELRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFFLGGQGSL 96
Query 83 VKPTIF--PDWEILPYDRLSPHQDIVSERLAILSNMPQTG---VLLISASTLAQRVAPIG 137
+ P + P E+LPYD +SP V+ERL L ++ Q L++S L ++V P+
Sbjct 97 LAPRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALVLSVRALHRKVLPLA 156
Query 138 WVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIR 197
+ + VGQ D + RL++ GY V D G F+VRG ++D+++ ++P+R
Sbjct 157 VMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGDLLDVFSPLYDKPVR 216
Query 198 IDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLKEGRSIFRERYAEA------FP 251
++ F D I++++ FDP++QRT + LK+ ++PA+E L + E A A P
Sbjct 217 LEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPRAESAARAVADRINLP 276
Query 252 TANPKKNPIYQDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDAL--D 309
T ++ + +G+ G+E LP FFE G + + P ++ +D L D
Sbjct 277 TIKLREQ--LDALREGLPGFGMEGLLPGFFEDGLSTVFDFLRDWSPEAPVIYLDDPLGQD 334
Query 310 ESLTSCWKDVVQRY---ESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAE 366
+ + W+++ + + E+R+ I P+ EH FL V ++++ F +
Sbjct 335 RAADTLWEELERSHGAAEARQELICPPL---EH-FLSREDVNQRMQSFRVLEG------- 383
Query 367 RVGGINLPVSQ--PVKLAVDPKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRP 424
GG++L ++ PV + ++ ++ + E L+ E R L+ A
Sbjct 384 --GGLSLAQTERPPVHFSFGGTQDLREAILAHHGEEGALSPLV--ERLERWRELRVACVV 439
Query 425 SLGDIPNVEGFDAFVKQQYA-IAITNAPLDRGLVLSSQ---------------------L 462
+ G + + + + + + PL+ + L L
Sbjct 440 ACGTLSQADRLKRLLMDRNVMVKVHTEPLEDAVALYEPSIRAHLFTGEVSHGFVDGPGGL 499
Query 463 AVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEI 522
AV+++ +++ R +RR KR +++ + +L G +VH D+G+GRYAGL +E+
Sbjct 500 AVLADEEIFGARA-RRRPKRSKKL--DAFGSGFGDLKEGDLIVHTDFGIGRYAGLTKMEV 556
Query 523 DDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQI 582
+ +FL L+YA K+Y+PV + LI ++SGGDP L KLGT +W K K++ EQ+
Sbjct 557 NGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQL 616
Query 583 HDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKP 642
+AAELL I A R++ PG AF + QF + F +EET DQA AIE L DMQ +P
Sbjct 617 LKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPEP 676
Query 643 MDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIE 702
MDRLVCGDVG+GKTEVAMRAAF A + KQVAVLVPTT+LAQQH+ SFK RFAD+P+ +E
Sbjct 677 MDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVE 736
Query 703 VLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKER 762
V+S ++ ++ + GKVDI++GTHKLL V F +LGLMIVDEE RFGV+ KE
Sbjct 737 VISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKES 796
Query 763 IKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREA 822
+K R+ +D+LTLTATPIPRTL+M+ SG+RD+SIIATPP R A++TFV ++ D V+EA
Sbjct 797 LKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEA 856
Query 823 ILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKE 882
I RE+ RGGQV+F+HN V+S+ +R LVP+ + VAHGQM E +LE+VM F K+
Sbjct 857 IEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKK 916
Query 883 YNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKH 942
Y VL+C++IIE+GID+ +ANT+I+ RAD+ GLAQL+QLRGRVGRS +AYAYLLVPS +
Sbjct 917 YQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRA 976
Query 943 LKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEK 1002
+ DA++RL+ +Q + LGAGF +A+ DLEIRGAG LLG++QSG++ IG+ +Y ++LE+
Sbjct 977 VTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMYAQLLEE 1036
Query 1003 ATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDN 1062
A +Q G+ P + + ++ L MPALIPD+Y+ DVHQRL+FYKR S +++ +
Sbjct 1037 AVAEMQ-GQPPK----VQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPDEVTD 1091
Query 1063 IRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLNSQGGYIEFSQDTPVQAISII 1122
+R EL+DR+G P V L + L++ +L + +++ + + D + +
Sbjct 1092 LRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLEVGTTRLVVTLGADALLDGPKVA 1151
Query 1123 QLMQKQPTYYRMEGGQRL 1140
L+Q+ YR+ +L
Sbjct 1152 GLVQRSKGVYRLTPDMKL 1169
>P57381 Transcription-repair-coupling factor [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=812
Score = 670 bits (1729), Expect = 0.0
Identities = 324/673 (48%), Positives = 484/673 (72%), Gaps = 0/673 (0%)
Query 494 SLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRY 553
+L++L + PV+HI++G+GRY GL T+E E+L + YA+ K+YVPV+NLHL+S Y
Sbjct 138 NLSQLILNHPVMHIEHGIGRYKGLTTIETASIQSEYLVISYAEGDKLYVPVSNLHLVSPY 197
Query 554 SGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQ 613
+G + APLHKLG D W+K K K + ++D AA+LLHI A+R+SK GFAF+ + Y
Sbjct 198 TGTSIENAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEKYDL 257
Query 614 FSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQV 673
F + +++ T DQ ++ L DM PMDRL+CGDVGFGKTE+AMRA+FLAV N KQV
Sbjct 258 FCNDCSFKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQV 317
Query 674 AVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHK 733
A+LVPTTLLAQQHY++FK RF++WP+ I +LSRF + K + + G+++I++GTHK
Sbjct 318 AILVPTTLLAQQHYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHK 377
Query 734 LLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRD 793
LL + +++ LGL+I+DEEHRFGV KE IK + +++D+LTLTATPIPRTLNMA +G++D
Sbjct 378 LLFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKD 437
Query 794 LSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNL 853
LSIIA PPA+RLA+KTF+QE++ +R+ ILRE+ RGGQVY+++N+V +I AE + L
Sbjct 438 LSIIAKPPAQRLAIKTFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSIL 497
Query 854 VPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLG 913
+PEA + + HGQM+ +L++VM +FY+ ++NVL+C+TIIE+G+D+ ANTII+E +D G
Sbjct 498 IPEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFG 557
Query 914 LAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEI 973
L+QLHQLRGR+GRS++QAYA LLV + + DA+KRL+AI G GF L+ +DLEI
Sbjct 558 LSQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEI 617
Query 974 RGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALI 1033
RG GE+LG++QSG ++ IG+SLYM++L+ A ++ GK + + L EI+LH+ +L+
Sbjct 618 RGVGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSLL 677
Query 1034 PDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEE 1093
P Y+ D++ RL FYK+++N +++++ I+ ELID+FG LP K L + ++RL A++
Sbjct 678 PSSYILDINTRLFFYKKLANAIHEKQIEEIKYELIDQFGKLPDFSKNLILIAKIRLIADK 737
Query 1094 LGITKIDLNSQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRI 1153
+GI I N+ G IEF+ + ++++ QK+P ++ME R+K + L+ R+
Sbjct 738 IGIKYIKSNNNIGIIEFNDYGSINTEYLLKMFQKEPKIWKMETSTRIKFILHLKNDYLRL 797
Query 1154 QFAHALLSKLIQE 1166
++ LL L ++
Sbjct 798 KWIINLLRNLFKK 810
>Q5HRQ2 Transcription-repair-coupling factor [Staphylococcus epidermidis
(strain ATCC 35984 / RP62A)]
Length=1169
Score = 666 bits (1718), Expect = 0.0
Identities = 401/1116 (36%), Positives = 647/1116 (58%), Gaps = 56/1116 (5%)
Query 16 SMFQQQISE----LKLKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHL 71
SM ISE +L ++ E + L S+ A + E + +++VT N
Sbjct 3 SMIANYISEDNRFQELDEVFGQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQA 62
Query 72 AQLESELEFYGVKPTIF--PDWEILPYDRLSPHQDIVSERLAILSNMPQ--TGVLLISAS 127
++E+++ Y ++ P +I+ + + ++SER+ L+ + Q G+ ++ +
Sbjct 63 DKIETDILQYVDDSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLN 122
Query 128 TLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDI 187
+ + P+ ++VGQ +D++ +L+ GY V GEF++RG I+DI
Sbjct 123 GFKKWLTPVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDI 182
Query 188 YASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLK-EGRSIFRERY 246
Y P+RI+LFD E+D+++ FD ETQR+ +N+ Q I A ++ + E +
Sbjct 183 YPL-IGTPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNEL 241
Query 247 AEAFPTANPK-KNPIYQDVLDGIASPGVEFYLPLFFEKGQM--------ESQSYFTAYLP 297
+A+ PK + + D+ + S + + FF+ + E S Y
Sbjct 242 KKAYEYTRPKIEKSVRNDLKETYES--FKLFESTFFDHQLLRRLVSFMYEKPSTLIDYFQ 299
Query 298 RNCIVITND-----ALDESLTSCWKDVVQRY-ESRRHNIDQPILSPEHLFLMPNMVLEQ- 350
+N I++ ++ +E+LT+ +D + ES I Q + E + +LEQ
Sbjct 300 KNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQGFMKYESF----DALLEQH 355
Query 351 LKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVDPKKEH--PFEVVT----KYINEVNHP 404
+ + SS + +P+ +K + P ++ ++++ +Y+++ ++
Sbjct 356 AVAYFTLFTSS---------MQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHQ-DYT 405
Query 405 VLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLS-SQLA 463
V+++ E+ + E ++ L IP V + + +T L G L QL
Sbjct 406 VVVLVETETKVERIQSMLNEM--HIPTVSNIHEDIDGGQVV-VTEGSLSEGFELPYMQLV 462
Query 464 VISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEID 523
VI+E +L++ R +++RKR + +S I+S +L++G +VH+ +GVGRY G+ TLE+
Sbjct 463 VITERELFKTRQ-KKQRKRTKTISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVG 521
Query 524 DQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIH 583
D ++++L Y +++VPV + + +Y + L+KLG W K K K + +
Sbjct 522 DTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVE 581
Query 584 DVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPM 643
D+A EL+ + R+ G+ + D + F F YE T DQ+ +I+ DM+ A+PM
Sbjct 582 DIADELIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPM 641
Query 644 DRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEV 703
DRL+CGDVG+GKTEVA+RAAF AV + KQVA LVPTT+LAQQHYE+ +R D+P+ I++
Sbjct 642 DRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFPVEIQL 701
Query 704 LSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERI 763
+SRF + K ++ E L++G VDIVVGTHKLL + +Q+ DLGL+IVDEE RFGVR KERI
Sbjct 702 VSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERI 761
Query 764 KAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAI 823
K ++ +VD+LTLTATPIPRTL+M+ G+RDLS+I TPP R V+T+V E + ++EA+
Sbjct 762 KTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEAL 821
Query 824 LRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEY 883
REL R GQV++L+N+V SI E ++ L+P+A +AVAHGQM ER+LE+ M F + EY
Sbjct 822 ERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEY 881
Query 884 NVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHL 943
++LV +TIIETG+DVPNANT+I+E AD+ GL+QL+QLRGRVGRS YAY L P+ K L
Sbjct 882 DILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVL 941
Query 944 KGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKA 1003
AE+RL AI+ + LG+GF +A DL IRGAG LLG+QQ G + ++G+ LY +MLE+A
Sbjct 942 NETAEERLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA 1001
Query 1004 TKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNI 1063
+ K + DAP E+ LH+ A +P EY+ ++ YK++ +T+E+L ++
Sbjct 1002 VNEKRGIKEESPDAP---DIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEEQLFDV 1058
Query 1064 RMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKI 1099
+ ELIDRF P+ V++L + ++++ A G+ I
Sbjct 1059 KDELIDRFNDYPIEVERLLDIVEIKVHALHAGVELI 1094
>P37474 Transcription-repair-coupling factor [Bacillus subtilis
(strain 168)]
Length=1177
Score = 665 bits (1717), Expect = 0.0
Identities = 411/1154 (36%), Positives = 654/1154 (57%), Gaps = 75/1154 (6%)
Query 34 EKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESELE--FYGVKPTIFPDW 91
+++ + L GS+ ++ + + + ++T N ++ +L ++P
Sbjct 26 KEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSVLLYPVN 85
Query 92 EILPYDRLSPHQDIVSERLAILSNMP--QTGVLLISASTLAQRVAPIGWVLGEHFDIQVG 149
E++ + ++ ++RL +++ + + +++ + + + + P+ IQVG
Sbjct 86 ELISSEIAVASPELRAQRLDVINRLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVG 145
Query 150 QKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEIDTLK 209
++ ++ RL++ GY D V GEF++RG I+DIY E P+RI+LFD E+D+++
Sbjct 146 HDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRIELFDTEVDSIR 205
Query 210 FFDPETQRTTENLKQFRILPAKEFPLK-EGRSIFRERYAEAFPT------ANPKKNPIYQ 262
F+ + QR+ E L I PAKE ++ E ++ E+ A+ +K ++
Sbjct 206 SFNSDDQRSIETLTSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHA 265
Query 263 DVL-------DGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSC 315
++ +G + YL F+EK + Y P N ++I ++
Sbjct 266 NISHDKERLSEGQTDQELVKYLSYFYEK-----PASLLDYTPDNTLLILDEV-------- 312
Query 316 WKDVVQRYESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVS---SEIIAERVGGI- 371
SR H +++ + E F+ +LE+ K I +S +I+AE+ +
Sbjct 313 ---------SRIHEMEEQLQKEEAEFI--TNLLEEGKILHDIRLSFSFQKIVAEQKRPLL 361
Query 372 -------NLPVSQPVKLA-VDPKKEHPFEVVTKYI-------NEVNHPVLLVAESAGRRE 416
++ + P + V ++ F + + N V+ + + R +
Sbjct 362 YYSLFLRHVHHTSPQNIVNVSGRQMQSFHGQMNVLAGEMERFKKSNFTVVFLGANKERTQ 421
Query 417 SLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLS-SQLAVISENQLYEHRV 475
L L + + A V+ Q + I L G L +LAVI+E +L+++RV
Sbjct 422 KLSSVLADYDIEAAMTDSKKALVQGQ--VYIMEGELQSGFELPLMKLAVITEEELFKNRV 479
Query 476 VQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYA 535
+++ R+Q+++ I+S +EL IG VVHI++G+G+Y G+ TLEI+ ++L + Y
Sbjct 480 --KKKPRKQKLTNAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQ 537
Query 536 DAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQAR 595
+ K+YVPV + + +Y G + L+KLG W + K+K + D+A +L+ + A
Sbjct 538 GSDKLYVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAE 597
Query 596 RQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGK 655
R++ G+AF D +F S F Y+ET DQ +I DM+ +PMDRL+CGDVG+GK
Sbjct 598 REASKGYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGK 657
Query 656 TEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQK 715
TEVA+RAAF A+ + KQVA+LVPTT+LAQQHYE+ K+RF D+PI I +LSRF + K +
Sbjct 658 TEVAIRAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANE 717
Query 716 NIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTL 775
I+ L+ G VDIV+GTH+LL + V + DLGL+I+DEE RFGV KE+IK ++A+VD+LTL
Sbjct 718 TIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTL 777
Query 776 TATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYF 835
TATPIPRTL+M+ G+RDLS+I TPP R V+T+V E+ VREAI REL RGGQVYF
Sbjct 778 TATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYF 837
Query 836 LHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETG 895
L+N V+ IER A+ I LVP+A+VA AHG+M E ELE VM F E +VLV +TIIETG
Sbjct 838 LYNRVEDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETG 897
Query 896 IDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQ 955
+D+PN NT+I+ ADK+GL+QL+QLRGRVGRS+ AYAY K L AEKRL AI+
Sbjct 898 VDIPNVNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIK 957
Query 956 RASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNF 1015
+ LG+GF +A DL IRGAG LLG QQ G + ++G+ LY +ML++A + +KG T
Sbjct 958 EFTELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEE-RKGDTAKT 1016
Query 1016 DAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLP 1075
+ EI++ + A IP+ Y+ D Q++ YKR + T E+ + ++ E+IDRFG P
Sbjct 1017 E---QFETEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYP 1073
Query 1076 VSVKQLFHVHQLRLQAEELGITKIDLNSQGGYIEFSQDTPVQAISIIQLMQKQPTYYRME 1135
V+ LF V ++++ A + + I + + S++ + I +L + Y R
Sbjct 1074 KEVEYLFTVAEMKVYARQERVELIKQDKDAVRLTISEEASAE-IDGQKLFELGNQYGRQI 1132
Query 1136 G----GQRLKVTVQ 1145
G G++LK+++Q
Sbjct 1133 GLGMEGKKLKISIQ 1146
>Q8CMT1 Transcription-repair-coupling factor [Staphylococcus epidermidis
(strain ATCC 12228 / FDA PCI 1200)]
Length=1169
Score = 664 bits (1714), Expect = 0.0
Identities = 400/1116 (36%), Positives = 646/1116 (58%), Gaps = 56/1116 (5%)
Query 16 SMFQQQISE----LKLKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHL 71
SM ISE +L ++ E + L S+ A + E + +++VT N
Sbjct 3 SMIANYISEDNRFQELDEVFGQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQA 62
Query 72 AQLESELEFYGVKPTIF--PDWEILPYDRLSPHQDIVSERLAILSNMPQ--TGVLLISAS 127
++E+++ Y ++ P +I+ + + ++SER+ L+ + Q G+ ++ +
Sbjct 63 DKIETDILQYVDDSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLN 122
Query 128 TLAQRVAPIGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDI 187
+ + P+ ++VGQ +D++ +L+ GY V GEF++RG I+DI
Sbjct 123 GFKKWLTPVDLWKDHQMTLKVGQDIDVDAFLNKLVNMGYRRESVVSHIGEFSLRGGIIDI 182
Query 188 YASGQEQPIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILPAKEFPLK-EGRSIFRERY 246
Y P+RI+LFD E+D+++ FD ETQR+ +N+ Q I A ++ + E +
Sbjct 183 YPL-IGTPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNEL 241
Query 247 AEAFPTANPK-KNPIYQDVLDGIASPGVEFYLPLFFEKGQM--------ESQSYFTAYLP 297
+A+ PK + + D+ + S + + FF+ + E S Y
Sbjct 242 KKAYEYTRPKIEKSVRNDLKETYES--FKLFESTFFDHQLLRRLVSFMYEKPSTLIDYFQ 299
Query 298 RNCIVITND-----ALDESLTSCWKDVVQRY-ESRRHNIDQPILSPEHLFLMPNMVLEQ- 350
+N I++ ++ +E+LT+ +D + ES I Q + E + +LEQ
Sbjct 300 KNAIIVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQGFMKYESF----DALLEQH 355
Query 351 LKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVDPKKEH--PFEVVT----KYINEVNHP 404
+ + SS + +P+ +K + P ++ ++++ +Y+++ ++
Sbjct 356 AVAYFTLFTSS---------MQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHQ-DYT 405
Query 405 VLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLS-SQLA 463
V+++ E+ + E ++ L IP V + + +T L G L QL
Sbjct 406 VVVLVETETKVERIQSMLNEM--HIPTVSNIHEDIDGGQVV-VTEGSLSEGFELPYMQLV 462
Query 464 VISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEID 523
VI+E +L++ R +++RKR + +S I+S +L++G +VH+ +GVGRY G+ TLE+
Sbjct 463 VITERELFKTRQ-KKQRKRTKTISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVG 521
Query 524 DQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIH 583
D ++++L Y +++VPV + + +Y + L+KLG W K K K + +
Sbjct 522 DTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVE 581
Query 584 DVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPM 643
D+A EL+ + R+ G+ + D + F F YE T DQ+ +I+ DM+ A+PM
Sbjct 582 DIADELIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPM 641
Query 644 DRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEV 703
DRL+CGDVG+GKTEVA+RAAF AV + KQVA LVPTT+LAQQHYE+ +R D+P+ I++
Sbjct 642 DRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDFPVEIQL 701
Query 704 LSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERI 763
+SRF + K ++ E L++G VDIVVGTHKLL + +Q+ DLGL+IVDEE RFGVR KERI
Sbjct 702 VSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERI 761
Query 764 KAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAI 823
K ++ +VD+LTLTATPIPRTL+M+ G+RDLS+I TPP R V+T+V E + ++EA+
Sbjct 762 KTLKKNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEAL 821
Query 824 LRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEY 883
REL R GQV++L+N+V SI E ++ L+P+A +AVAHGQM ER+LE+ M F + EY
Sbjct 822 ERELSRDGQVFYLYNKVQSIYEKREQLQRLMPDANIAVAHGQMTERDLEETMLSFINHEY 881
Query 884 NVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHL 943
++LV +TIIETG+DVPNANT+I+E AD+ GL+QL+QLRGRVGRS YAY L P+ K L
Sbjct 882 DILVTTTIIETGVDVPNANTLIIEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVL 941
Query 944 KGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKA 1003
AE+RL I+ + LG+GF +A DL IRGAG LLG+QQ G + ++G+ LY +MLE+A
Sbjct 942 NETAEERLQTIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEA 1001
Query 1004 TKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNI 1063
+ K + DAP E+ LH+ A +P EY+ ++ YK++ +T+E+L ++
Sbjct 1002 VNEKRGIKEESPDAP---DIEVELHLDAYLPAEYIQSEQAKIEIYKKLRKVETEEQLFDV 1058
Query 1064 RMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKI 1099
+ ELIDRF P+ V++L + ++++ A G+ I
Sbjct 1059 KDELIDRFNDYPIEVERLLDIVEIKVHALHAGVELI 1094
>Q6GJG8 Transcription-repair-coupling factor [Staphylococcus aureus
(strain MRSA252)]
Length=1168
Score = 660 bits (1703), Expect = 0.0
Identities = 398/1098 (36%), Positives = 631/1098 (57%), Gaps = 46/1098 (4%)
Query 27 LKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKP 85
L Q+ + L S+ + E Q L+++T N +LE++L +F V+
Sbjct 17 LNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFVDVEE 76
Query 86 TI-FPDWEILPYDRLSPHQDIVSERLAILSNMPQ--TGVLLISASTLAQRVAPIGWVLGE 142
+P +I+ + + ++SER+ L+ + Q G+ ++ + L + + P+
Sbjct 77 LYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLTPVEMWQNH 136
Query 143 HFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFD 202
++VG+ +D+++ +L+ GY V GEF++RG I+DI+ E PIRI+LFD
Sbjct 137 QMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE-PIRIELFD 195
Query 203 DEIDTLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNPIY 261
EID+++ FD ETQR+ +N+++ I A ++ + +E S +E A+ PK
Sbjct 196 TEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYENTRPK----- 250
Query 262 QDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKD-VV 320
V L +E ++ +YF + R + + + KD ++
Sbjct 251 -------IDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIDYFQKDAII 303
Query 321 QRYESRRHNIDQPILSPEHLFLMPNMVLE----------QLKQFPRIHVSSEIIAERVGG 370
E R + L+ E + N++ + F + + +
Sbjct 304 AVDEFNRIKETEESLTVESDSFISNVIESGNGFIGQSFIKYDDFETLIEGYPVTYFSLFA 363
Query 371 INLPV--SQPVKLAVDPKKEH--PFEVVT----KYINEVNHPVLLVAESAGRRESLKDAL 422
+P+ + +K + P ++ ++++ +Y+N+ H V+LV E+ + E ++ L
Sbjct 364 TTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLV-ETETKVERMQAML 422
Query 423 RPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLSSQ-LAVISENQLYEHRVVQRRRK 481
S IP++ + A+ I + L G L L VI+E +L++ + +++RK
Sbjct 423 --SEMHIPSITKLHRSMSSGQAVIIEGS-LSEGFELPDMGLVVITERELFKSKQ-KKQRK 478
Query 482 RQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVY 541
R + +S I+S +L++G +VH+ +GVGRY G+ TLE+ ++++L Y +++
Sbjct 479 RTKAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQIHRDYIKLQYKGTDQLF 538
Query 542 VPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPG 601
VPV + + +Y + L+KLG W K K K + + D+A EL+ + R+ G
Sbjct 539 VPVDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEG 598
Query 602 FAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMR 661
+ + D + F F YE T DQA +I+ DMQ ++PMDRL+CGDVG+GKTEVA+R
Sbjct 599 YQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVR 658
Query 662 AAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQ 721
AAF AV KQVA LVPTT+LAQQHYE+ +R D+P+ I+++SRF + K ++ E L+
Sbjct 659 AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLK 718
Query 722 TGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIP 781
TG VDIVVGTHKLL + +Q+ DLGL+IVDEE RFGVR KERIK ++ +VD+LTLTATPIP
Sbjct 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query 782 RTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVD 841
RTL+M+ G+RDLS+I TPP R V+T+V E ++EA+ REL R GQV++L+N+V
Sbjct 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query 842 SIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNA 901
SI E ++ L+P+A +AVAHGQM ER+LE+ M F + EY++LV +TIIETG+DVPNA
Sbjct 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query 902 NTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLG 961
NT+I+E AD+ GL+QL+QLRGRVGRS YAY L P+ K L AE RL AI+ + LG
Sbjct 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query 962 AGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSL 1021
+GF +A DL IRGAG LLG+QQ G + +G+ LY +MLE+A + K P + P
Sbjct 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVP--- 1015
Query 1022 TAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQL 1081
E++L++ A +P EY+ + ++ YK++ T+T +++ +I+ ELIDRF PV V +L
Sbjct 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARL 1075
Query 1082 FHVHQLRLQAEELGITKI 1099
+ ++++ A GIT I
Sbjct 1076 LDIVEIKVHALHSGITLI 1093
>Q2G0R8 Transcription-repair-coupling factor [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=1168
Score = 659 bits (1700), Expect = 0.0
Identities = 397/1098 (36%), Positives = 630/1098 (57%), Gaps = 46/1098 (4%)
Query 27 LKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKP 85
L Q+ + L S+ + E Q L+++T N +LE++L +F +
Sbjct 17 LNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEE 76
Query 86 TI-FPDWEILPYDRLSPHQDIVSERLAILSNMPQ--TGVLLISASTLAQRVAPIGWVLGE 142
+P +I+ + + ++SER+ L+ + Q G+ ++ + L + + P+
Sbjct 77 LYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLTPVEMWQNH 136
Query 143 HFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFD 202
++VG+ +D+++ +L+ GY V GEF++RG I+DI+ E PIRI+LFD
Sbjct 137 QMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE-PIRIELFD 195
Query 203 DEIDTLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNPIY 261
EID+++ FD ETQR+ +N+++ I A ++ + +E S +E A+ PK
Sbjct 196 TEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYENTRPK----- 250
Query 262 QDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKD-VV 320
V L +E ++ +YF + R + + + KD ++
Sbjct 251 -------IDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIEYFQKDAII 303
Query 321 QRYESRRHNIDQPILSPEHLFLMPNMVLE----------QLKQFPRIHVSSEIIAERVGG 370
E R + L+ E + N++ + F + + +
Sbjct 304 AVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQSFIKYDDFETLIEGYPVTYFSLFA 363
Query 371 INLPV--SQPVKLAVDPKKEH--PFEVVT----KYINEVNHPVLLVAESAGRRESLKDAL 422
+P+ + +K + P ++ ++++ +Y+N+ H V+LV E+ + E ++ L
Sbjct 364 TTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLV-ETETKVERMQAML 422
Query 423 RPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLSSQ-LAVISENQLYEHRVVQRRRK 481
S IP++ + A+ I + L G L L VI+E +L++ + +++RK
Sbjct 423 --SEMHIPSITKLHRSMSSGQAVIIEGS-LSEGFELPDMGLVVITERELFKSKQ-KKQRK 478
Query 482 RQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVY 541
R + +S I+S +L++G +VH+ +GVGRY G+ TLE+ ++++L Y +++
Sbjct 479 RTKAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLF 538
Query 542 VPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPG 601
VPV + + +Y + L+KLG W K K K + + D+A EL+ + R+ G
Sbjct 539 VPVDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEG 598
Query 602 FAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMR 661
+ + D + F F YE T DQA +I+ DMQ ++PMDRL+CGDVG+GKTEVA+R
Sbjct 599 YQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVR 658
Query 662 AAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQ 721
AAF AV KQVA LVPTT+LAQQHYE+ +R D+P+ I+++SRF + K ++ E L+
Sbjct 659 AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLK 718
Query 722 TGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIP 781
TG VDIVVGTHKLL + +Q+ DLGL+IVDEE RFGVR KERIK ++ +VD+LTLTATPIP
Sbjct 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query 782 RTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVD 841
RTL+M+ G+RDLS+I TPP R V+T+V E ++EA+ REL R GQV++L+N+V
Sbjct 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query 842 SIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNA 901
SI E ++ L+P+A +AVAHGQM ER+LE+ M F + EY++LV +TIIETG+DVPNA
Sbjct 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query 902 NTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLG 961
NT+I+E AD+ GL+QL+QLRGRVGRS YAY L P+ K L AE RL AI+ + LG
Sbjct 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query 962 AGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSL 1021
+GF +A DL IRGAG LLG+QQ G + +G+ LY +MLE+A + K P + P
Sbjct 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVP--- 1015
Query 1022 TAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQL 1081
E++L++ A +P EY+ + ++ YK++ T+T +++ +I+ ELIDRF PV V +L
Sbjct 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARL 1075
Query 1082 FHVHQLRLQAEELGITKI 1099
+ ++++ A GIT I
Sbjct 1076 LDIVEIKVHALHSGITLI 1093
>Q2FJD8 Transcription-repair-coupling factor [Staphylococcus aureus
(strain USA300)]
Length=1168
Score = 659 bits (1700), Expect = 0.0
Identities = 397/1098 (36%), Positives = 630/1098 (57%), Gaps = 46/1098 (4%)
Query 27 LKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKP 85
L Q+ + L S+ + E Q L+++T N +LE++L +F +
Sbjct 17 LNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFIDAEE 76
Query 86 TI-FPDWEILPYDRLSPHQDIVSERLAILSNMPQ--TGVLLISASTLAQRVAPIGWVLGE 142
+P +I+ + + ++SER+ L+ + Q G+ ++ + L + + P+
Sbjct 77 LYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLTPVEMWQNH 136
Query 143 HFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFD 202
++VG+ +D+++ +L+ GY V GEF++RG I+DI+ E PIRI+LFD
Sbjct 137 QMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGE-PIRIELFD 195
Query 203 DEIDTLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNPIY 261
EID+++ FD ETQR+ +N+++ I A ++ + +E S +E A+ PK
Sbjct 196 TEIDSIRDFDVETQRSKDNVEEVDITTASDYIITEEVISHLKEELKTAYENTRPK----- 250
Query 262 QDVLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKD-VV 320
V L +E ++ +YF + R + + + KD ++
Sbjct 251 -------IDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIEYFQKDAII 303
Query 321 QRYESRRHNIDQPILSPEHLFLMPNMVLE----------QLKQFPRIHVSSEIIAERVGG 370
E R + L+ E + N++ + F + + +
Sbjct 304 AVDEFNRIKETEESLTVESDSFISNIIESGNGFIGQSFIKYDDFETLIEGYPVTYFSLFA 363
Query 371 INLPV--SQPVKLAVDPKKEH--PFEVVT----KYINEVNHPVLLVAESAGRRESLKDAL 422
+P+ + +K + P ++ ++++ +Y+N+ H V+LV E+ + E ++ L
Sbjct 364 TTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLV-ETETKVERMQAML 422
Query 423 RPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVLSSQ-LAVISENQLYEHRVVQRRRK 481
S IP++ + A+ I + L G L L VI+E +L++ + +++RK
Sbjct 423 --SEMHIPSITKLHRSMSSGQAVIIEGS-LSEGFELPDMGLVVITERELFKSKQ-KKQRK 478
Query 482 RQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVY 541
R + +S I+S +L++G +VH+ +GVGRY G+ TLE+ ++++L Y +++
Sbjct 479 RTKAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLF 538
Query 542 VPVTNLHLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPG 601
VPV + + +Y + L+KLG W K K K + + D+A EL+ + R+ G
Sbjct 539 VPVDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEG 598
Query 602 FAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMR 661
+ + D + F F YE T DQA +I+ DMQ ++PMDRL+CGDVG+GKTEVA+R
Sbjct 599 YQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVR 658
Query 662 AAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQ 721
AAF AV KQVA LVPTT+LAQQHYE+ +R D+P+ I+++SRF + K ++ E L+
Sbjct 659 AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLK 718
Query 722 TGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIP 781
TG VDIVVGTHKLL + +Q+ DLGL+IVDEE RFGVR KERIK ++ +VD+LTLTATPIP
Sbjct 719 TGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIP 778
Query 782 RTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVD 841
RTL+M+ G+RDLS+I TPP R V+T+V E ++EA+ REL R GQV++L+N+V
Sbjct 779 RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQ 838
Query 842 SIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNA 901
SI E ++ L+P+A +AVAHGQM ER+LE+ M F + EY++LV +TIIETG+DVPNA
Sbjct 839 SIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNA 898
Query 902 NTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLG 961
NT+I+E AD+ GL+QL+QLRGRVGRS YAY L P+ K L AE RL AI+ + LG
Sbjct 899 NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELG 958
Query 962 AGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSL 1021
+GF +A DL IRGAG LLG+QQ G + +G+ LY +MLE+A + K P + P
Sbjct 959 SGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVP--- 1015
Query 1022 TAEINLHMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQL 1081
E++L++ A +P EY+ + ++ YK++ T+T +++ +I+ ELIDRF PV V +L
Sbjct 1016 EVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARL 1075
Query 1082 FHVHQLRLQAEELGITKI 1099
+ ++++ A GIT I
Sbjct 1076 LDIVEIKVHALHSGITLI 1093
>Q89AK2 Transcription-repair-coupling factor [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=697
Score = 657 bits (1694), Expect = 0.0
Identities = 334/668 (50%), Positives = 465/668 (70%), Gaps = 0/668 (0%)
Query 488 EEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNL 547
+E I L++L I P+VH ++GVGRY GL T+ + E + ++YA +K+YVP+T L
Sbjct 20 DEKNICDLSKLKINQPIVHFEHGVGRYQGLTTVTTRNIKTECVVINYAQNSKLYVPITYL 79
Query 548 HLISRYSGGDPDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELD 607
+LISRY G PLH+LG D W+K K+KA E+ +D AA LL+I + R S+ GF+F+
Sbjct 80 YLISRYIGTSKKDIPLHRLGNDLWNKEKKKANEKAYDSAAILLNIYSHRISQKGFSFKKH 139
Query 608 QSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAV 667
+ Y F F + T DQ +AI + L DM + PMDRLVCGDVGFGKTEVAMRA FLAV
Sbjct 140 HTKYKIFCERFPFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAV 199
Query 668 QNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDI 727
N KQVA+LVPTTLLAQQH+ +F RF W +IE+LSRF S + I ++ G V +
Sbjct 200 CNQKQVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHV 259
Query 728 VVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMA 787
++GTHK+L + +++ +LGL+IVDEEHRFGV KE+IK + ++D+LTLTATPIPRTLNMA
Sbjct 260 LIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTLNMA 319
Query 788 FSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTA 847
F G+RDLSIIATPP +RL VKTFV+E + +R+AILRE+LRGGQVY+++N V+ IER
Sbjct 320 FVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILRGGQVYYIYNNVNKIERKK 379
Query 848 ENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIME 907
++ LVPEA + + HGQ+R +LE +M FYHK +NVLVCSTIIETGID+PN NTII+E
Sbjct 380 IELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIE 439
Query 908 RADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLA 967
A+ GLAQLHQLRGRVGRS HQAYA+LLVPS+K +K DA+KR+DAI + G+ F LA
Sbjct 440 NANNFGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSDAKKRIDAITSIESFGSCFELA 499
Query 968 TEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINL 1027
DLEIRG GE+LG QSG + IG+SLYM++L A + I+ G + ++ +I L
Sbjct 500 NRDLEIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRNIKNGYYKPLNDIINTYPKIEL 559
Query 1028 HMPALIPDEYLGDVHQRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQL 1087
++ L+PD Y+ V+ RL FY +I+ ++ L+ IR+ L FG LP S L + ++
Sbjct 560 NVSNLLPDSYIKKVNHRLFFYNKIATSNNFLDLEKIRLTLCKNFGNLPNSGDYLIKIAKI 619
Query 1088 RLQAEELGITKIDLNSQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQ 1147
RL ++++G+ KI + +GGYIEF +D+ + ++++ +K+ ++ + RL+ + +
Sbjct 620 RLISKKIGVKKIKSDVKGGYIEFFEDSKINIQNLLKEFKKEKNCWKFDTSNRLRFSKNFK 679
Query 1148 EYDKRIQF 1155
+RI +
Sbjct 680 NNSERIDW 687
>P9WMQ5 Transcription-repair-coupling factor [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=1234
Score = 603 bits (1556), Expect = 0.0
Identities = 404/1122 (36%), Positives = 588/1122 (52%), Gaps = 65/1122 (6%)
Query 26 KLKQLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESELE-FYGVK 84
+L Q G + + +S LL + + LLV VT + L +EL +G
Sbjct 28 QLMQRAGGRPDELTLIAPASARLLVASALARQGPLLV-VTATGREADDLAAELRGVFGDA 86
Query 85 PTIFPDWEILPYDRLSPHQDIVSERLAILSNM---------PQTGVLLISASTLAQRVAP 135
+ P WE LP++RLSP D V RL L + P GV++ S +L Q + P
Sbjct 87 VALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTP 146
Query 136 -IGWVLGEHFDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQ 194
+G + E + VG + + RL++ Y VD V GEFAVRG I+DI+A E
Sbjct 147 QLGMM--EPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEH 204
Query 195 PIRIDLFDDEIDTLKFFDPETQRTTENLKQFRILP--AKEFPLKEGRSIFRERYAEAFPT 252
P+R++ + DEI ++ F QR+ + ++ +E L E + A P
Sbjct 205 PVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPA 264
Query 253 ANPKKNPIYQDVL----DGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITND-- 306
A D+L +GIA G+E LP+ + G + T LP V+ D
Sbjct 265 AESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGH----ALLTDQLPDGTPVLVCDPE 320
Query 307 -----ALD------ESLTSCWKDVVQRYESRRHNIDQPILSPEHLFLMPNMVLEQLKQFP 355
A D E L + W + +D L + + +
Sbjct 321 KVRTRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGH 380
Query 356 RIHVSSEIIAERVGGINLPV-SQPVKLAVDPKKEHPFEVVTKYINEVNHPVLLVAESAGR 414
S++ E I L V + P + F ++ +I + L VA G
Sbjct 381 PWWTLSQLSDE--SAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAAL-VAPGTGT 437
Query 415 RESLKDALRPSLGDIPNVEGFDAFVKQQYAIAITNAPLDRGLVL-SSQLAVISENQLYEH 473
+ + L S D P + + + PL G+++ + L VI+E L
Sbjct 438 AHRVVERLSES--DTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGS 495
Query 474 RVVQRRRKRQQEVSEEFLIRSLTELSIGAPVVHIDYGVGRYAGLITLEIDDQDHEFLQLD 533
RV KR ++ I L+ G VVH +G+GR+ ++ + E+L L+
Sbjct 496 RVSAAEGKRL--AAKRRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLE 553
Query 534 YADAA---------KVYVPVTNLHLISRYSGGDPDLAP-LHKLGTDAWSKAKRKALEQIH 583
YA A K+YVP+ +L +SRY GG AP L +LG W+ K KA +
Sbjct 554 YASAKRGGGAKNTDKLYVPMDSLDQLSRYVGGQ---APALSRLGGSDWANTKTKARRAVR 610
Query 584 DVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPM 643
++A EL+ + A+RQ+ PG AF D + F + ET+DQ AIE DM+ PM
Sbjct 611 EIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPM 670
Query 644 DRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEV 703
DR++CGDVG+GKTE+A+RAAF AVQ+ KQVAVLVPTTLLA QH ++F +R + +P+ I+
Sbjct 671 DRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKG 730
Query 704 LSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERI 763
LSRF + I+ L G VDIV+GTH+LLQ V++ DLGL++VDEE RFGV KE I
Sbjct 731 LSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHI 790
Query 764 KAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPARRLAVKTFVQEHTDDSVREAI 823
K++R VD+LT++ATPIPRTL M+ +G+R++S I TPP R V T+V H D + A+
Sbjct 791 KSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAAL 850
Query 824 LRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEY 883
RELLR GQ +++HN V SI+ A +R LVPEARV VAHGQM E LE +Q+F+++E+
Sbjct 851 RRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREH 910
Query 884 NVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHL 943
++LVC+TI+ETG+D+ NANT+I+ERAD GL+QLHQLRGRVGRS + YAY L P L
Sbjct 911 DILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPL 970
Query 944 KGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYMEMLEKA 1003
A RL I + + LGAG +A +DLEIRGAG +LG +QSG + +G+ LY+ ++ +A
Sbjct 971 TETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEA 1030
Query 1004 TKAIQKGKTPNFDAPLSLTAE------INLHMPALIPDEYLGDVHQRLLFYKRISNTDTQ 1057
+ + D TAE I+L + A +P +Y+ RL Y+R++ +
Sbjct 1031 LETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSD 1090
Query 1058 EKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKI 1099
++ + EL DR+G LP ++L V +LRL GIT +
Sbjct 1091 REVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGITDV 1132
>B7UM74 ATP-dependent DNA helicase RecG [Escherichia coli O127:H6
(strain E2348/69 / EPEC)]
Length=693
Score = 246 bits (628), Expect = 5e-72
Identities = 166/449 (37%), Positives = 239/449 (53%), Gaps = 25/449 (6%)
Query 558 PDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSG 617
P L L T +R LE++ +L ++A Q + + + +
Sbjct 205 PPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAA 264
Query 618 FAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLV 677
++ T QA + DM L PM RLV GDVG GKT VA AA AV + KQVA++
Sbjct 265 LPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAVAHGKQVALMA 324
Query 678 PTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQE 737
PT LLA+QH +F++ FA I + L+ K E + +G+V ++VGTH + QE
Sbjct 325 PTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQE 384
Query 738 TVQFHDLGLMIVDEEHRFGVRDK----ERIKAMRADVDMLTLTATPIPRTLNMAFSGMRD 793
VQF+ L L+I+DE+HRFGV + E+ + L +TATPIPRTL M D
Sbjct 385 QVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLD 444
Query 794 LSIIATPPARRLAVKTFVQEHTD-----DSVREAILRELLRGGQVYFLHN--------EV 840
S+I P R V T T D VR A + E G Q Y++ E
Sbjct 445 TSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRHACMTE---GRQAYWVCTLIEESELLEA 501
Query 841 DSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPN 900
+ E T E ++ +PE V + HG+M+ E + VM F E ++LV +T+IE G+DVPN
Sbjct 502 QAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMTSFKQGELHLLVATTVIEVGVDVPN 561
Query 901 ANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTL 960
A+ +I+E ++LGLAQLHQLRGRVGR ++ LL + L A+ RL ++ ++
Sbjct 562 ASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT--PLSKTAQIRLQVLRDSND- 618
Query 961 GAGFMLATEDLEIRGAGELLGEQQSGSMQ 989
GF++A +DLEIRG GELLG +Q+G+ +
Sbjct 619 --GFVIAQKDLEIRGPGELLGTRQTGNAE 645
>P24230 ATP-dependent DNA helicase RecG [Escherichia coli (strain
K12)]
Length=693
Score = 244 bits (623), Expect = 2e-71
Identities = 165/449 (37%), Positives = 239/449 (53%), Gaps = 25/449 (6%)
Query 558 PDLAPLHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSG 617
P L L T +R LE++ +L ++A Q + + + +
Sbjct 205 PPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAA 264
Query 618 FAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLV 677
++ T QA + DM L PM RLV GDVG GKT VA AA A+ + KQVA++
Sbjct 265 LPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMA 324
Query 678 PTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQE 737
PT LLA+QH +F++ FA I + L+ K E + +G+V ++VGTH + QE
Sbjct 325 PTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQE 384
Query 738 TVQFHDLGLMIVDEEHRFGVRDK----ERIKAMRADVDMLTLTATPIPRTLNMAFSGMRD 793
VQF+ L L+I+DE+HRFGV + E+ + L +TATPIPRTL M D
Sbjct 385 QVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLD 444
Query 794 LSIIATPPARRLAVKTFV---QEHTD--DSVREAILRELLRGGQVYFLHN--------EV 840
S+I P R V T TD D V A + E G Q Y++ E
Sbjct 445 TSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITE---GRQAYWVCTLIEESELLEA 501
Query 841 DSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPN 900
+ E T E ++ +PE V + HG+M+ E + VM F E ++LV +T+IE G+DVPN
Sbjct 502 QAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPN 561
Query 901 ANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTL 960
A+ +I+E ++LGLAQLHQLRGRVGR ++ LL + L A+ RL ++ ++
Sbjct 562 ASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT--PLSKTAQIRLQVLRDSND- 618
Query 961 GAGFMLATEDLEIRGAGELLGEQQSGSMQ 989
GF++A +DLEIRG GELLG +Q+G+ +
Sbjct 619 --GFVIAQKDLEIRGPGELLGTRQTGNAE 645
>Q54900 ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4)]
Length=671
Score = 243 bits (619), Expect = 5e-71
Identities = 146/376 (39%), Positives = 230/376 (61%), Gaps = 22/376 (6%)
Query 623 TLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLL 682
T Q +++ L DM+ M+RL+ GDVG GKT VA A F AV Q A++VPT +L
Sbjct 254 TQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPTEIL 313
Query 683 AQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKN--IEDLQTGKVDIVVGTHKLLQETVQ 740
A+QH+ES ++ F + +++ +L+ GS K +K +E + G+ D+++GTH L+Q+ V+
Sbjct 314 AEQHFESLQNLFPN--LKLALLT--GSLKAAEKREVLETIAKGEADLIIGTHALIQDGVE 369
Query 741 FHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATP 800
+ LGL+I+DE+HRFGV + ++ + D+L +TATPIPRTL + G D+SII
Sbjct 370 YARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPIPRTLAITAFGDMDVSIIDQM 429
Query 801 PARRLAVKT-FVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIER---------TAENI 850
PA R + T +++ V + E+ +G QVY + ++ E + E
Sbjct 430 PAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVYVISPLIEESEALDLKNAIALSEELT 489
Query 851 RNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERAD 910
+ +A VA+ HG+M+ E +Q+MQ F ++ ++LV +T+IE G++VPNA +I+ AD
Sbjct 490 THFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDAD 549
Query 911 KLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATED 970
+ GL+QLHQLRGRVGR Q+YA L + + K D+ K D ++ + GF+LA ED
Sbjct 550 RFGLSQLHQLRGRVGRGDKQSYAVL----VANPKTDSGK--DRMRIMTETTNGFVLAEED 603
Query 971 LEIRGAGELLGEQQSG 986
L++RG+GE+ G +QSG
Sbjct 604 LKMRGSGEIFGTRQSG 619
Score = 21.6 bits (44), Expect = 6.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 978 ELLGEQQSGSMQAIGYSLYMEMLEKATKAIQK 1009
E+L EQ S+Q + +L + +L + KA +K
Sbjct 311 EILAEQHFESLQNLFPNLKLALLTGSLKAAEK 342
>O50581 ATP-dependent DNA helicase RecG [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=686
Score = 231 bits (588), Expect = 8e-67
Identities = 147/432 (34%), Positives = 233/432 (54%), Gaps = 25/432 (6%)
Query 596 RQSKPGFAFELDQSPYMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGK 655
+ S + D F +E T Q +++ D++ M RL+ GDVG GK
Sbjct 239 KSSDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGK 298
Query 656 TEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQK 715
T VA + Q A++VPT +LA+QH ES F D + + +L+ K +
Sbjct 299 TVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMALFGD-SMNVALLTGSVKGKKRKI 357
Query 716 NIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTL 775
+E L+ G +D ++GTH L+Q+ V FH++GL+I DE+HRFGV ++ ++ A ++L +
Sbjct 358 LLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFM 417
Query 776 TATPIPRTLNMAFSGMRDLSIIAT-PPARRLAVKTFVQEHTDDSVREAILRELLRGGQVY 834
TATPIPRTL ++ G D+S I P R+ + T+ + D V + EL +G Q Y
Sbjct 418 TATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAY 477
Query 835 FLHNEVDSIERTAENIRNLVP----------EARVAVAHGQMRERELEQVMQQFYHKEYN 884
+ ++S E E+++N+V +RV + HG++ E ++VMQ+F + E N
Sbjct 478 VICPLIESSEHL-EDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIN 536
Query 885 VLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGRVGRSHHQAYAYLLVPSIKHLK 944
VLV +T++E G++VPNA +++ AD+ GL+ LHQLRGRVGRS Q+Y L+
Sbjct 537 VLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVLIA------S 590
Query 945 GDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQQSGSMQAIGYSLYME--MLE- 1001
E ++ + + GF L+ DLE+RG G+ G +QSG + +L + MLE
Sbjct 591 PKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVEDYRMLEV 650
Query 1002 ---KATKAIQKG 1010
+A + IQ G
Sbjct 651 ARDEAAELIQSG 662
Score = 21.2 bits (43), Expect = 8.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query 61 LVIVTQNSQHLAQLESELE------FYGVKPTIFPDW 91
+ I+TQ + E +LE F+GVK + PD+
Sbjct 600 MTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDF 636
>O50224 ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans]
Length=652
Score = 110 bits (274), Expect = 2e-27
Identities = 98/308 (32%), Positives = 143/308 (46%), Gaps = 40/308 (13%)
Query 611 YMQFSSGFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNN 670
++ FS A E + + NA D+ +PM RL+ GDVG GKT VA A A++
Sbjct 281 HLPFSPTMAQERVIAEINA------DLVRHRPMRRLLQGDVGSGKTLVAAAATLTALEAG 334
Query 671 KQVAVLVPTTLLAQQHYESFKDRFADW--PIRIEVLSRFGSN--KTHQKNIEDLQTGKVD 726
QVA++ PT +LA+Q + RF W P+ +EV GS + ++ E L G +
Sbjct 335 YQVAMMAPTEILAEQLHA----RFQQWLEPLGLEVGYLVGSRSPRARRETAETLAGGSLR 390
Query 727 IVVGTHKLLQETVQFHDLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNM 786
+V+GT L QE V F LGL+I+DE+HRFGV + ++ A +L +TATPI +
Sbjct 391 LVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGAMPHLLVMTATPIMVEDGI 450
Query 787 AFSGMRDLSIIATP----PARRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDS 842
SG+ L TP P + F D + RE R LRG L++ D
Sbjct 451 TVSGI--LLFGRTPNRFLPQAGIDAVAFPGVDKDYAARE---RAALRGPMTPLLNDAGDI 505
Query 843 IERTAENIRNLVPEARVAVAHGQM--------------RERELEQVMQQFYHKEYNVLVC 888
+E + A+ GQ+ RE E ++ H++Y L+
Sbjct 506 VEAGLVEQAIAFVQRNTAIG-GQLEEGGARRENLPAYPREAIREAIVNALIHRDY--LLS 562
Query 889 STIIETGI 896
ST IE I
Sbjct 563 STDIELSI 570
>Q50939 UvrABC system protein B [Neisseria gonorrhoeae]
Length=675
Score = 60.5 bits (145), Expect = 7e-12
Identities = 66/303 (22%), Positives = 117/303 (39%), Gaps = 42/303 (14%)
Query 43 GSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKPTIFPDWEILPYDRLSP 101
GS ++ Q +I+ N AQL +E+ EF+ P ++ + YD P
Sbjct 48 GSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLYAEMREFF---PENAVEYFVSYYDYYQP 104
Query 102 -----------------HQDIVSERLAILSN-MPQTGVLLISASTLAQRVAPIGWVLGEH 143
++ I RL+ N M + V++++ + +
Sbjct 105 EAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEYQQMV 164
Query 144 FDIQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIY-ASGQEQPIRIDLFD 202
++ G ++ L+ Y D + G F VRG ++D+Y A E +RI LFD
Sbjct 165 LSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFD 224
Query 203 DEIDTLKFFDPETQRTTENLKQFRILPAKEF------PLKEGRSIFRERYAEAFPTANPK 256
DEID L FDP + + + ++ + P+ + L+ SI +E E +
Sbjct 225 DEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESI-KEELRERIEFFARE 283
Query 257 KNPIYQDVLDGIA------------SPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVIT 304
+ P+ Q ++ G+E Y F K + E YLP N I+
Sbjct 284 QRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFI 343
Query 305 NDA 307
+++
Sbjct 344 DES 346
Score = 35.4 bits (80), Expect = 3e-04
Identities = 33/128 (26%), Positives = 59/128 (46%), Gaps = 33/128 (26%)
Query 830 GGQVYFLHNEVDSIERTAENIRNLVPEARVAVAHGQMRERELEQVMQQFYHKEYNVLVCS 889
G +V +LH+++D++ER E IR+L R+ + ++VLV
Sbjct 475 GIKVRYLHSDIDTVERV-EIIRDL----RLGL---------------------FDVLVGI 508
Query 890 TIIETGIDVPNANTIIMERADKLGLAQLH----QLRGRVGRSHHQA---YAYLLVPSIKH 942
++ G+D+P + + + ADK G + H Q GR R+ + YA + S+K
Sbjct 509 NLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYADKITDSMKA 568
Query 943 LKGDAEKR 950
+ E+R
Sbjct 569 AVDETERR 576
Score = 28.1 bits (61), Expect = 0.061
Identities = 21/90 (23%), Positives = 44/90 (49%), Gaps = 5/90 (6%)
Query 667 VQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVD 726
+Q ++V V T +A+Q D +++ I++ L + I DL+ G D
Sbjct 448 IQKGERVLVTTLTKRMAEQ----LTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFD 503
Query 727 IVVGTHKLLQETVQFHDLGLMIVDEEHRFG 756
++VG + LL+E + ++ L+ + + + G
Sbjct 504 VLVGIN-LLREGLDIPEVSLVAILDADKEG 532
>P05445 Primosomal protein N' [Rhodospirillum rubrum]
Length=811
Score = 58.2 bits (139), Expect = 4e-11
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 15/155 (10%)
Query 646 LVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLAQQHYESFKDRFADWPIRIEVLS 705
L+ G G GKTEV A ++ +Q VL+P LA Q F DRF P++ S
Sbjct 250 LLEGVTGSGKTEVYFEAIAETLRRGRQALVLLPEIALAAQWPRRFADRFGAAPVQWH--S 307
Query 706 RFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHDLGLMIVDEEH----------RF 755
+ G+ ++ + G+ +VVG L + + DLGL+IVDEEH +
Sbjct 308 QMGA-AARRRAWRAVALGRAPVVVGARSAL--FLPYPDLGLIIVDEEHDSAFKQEEGVPY 364
Query 756 GVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSG 790
RD ++A + +ATP T+ A G
Sbjct 365 NARDMAVVRARLGGFPAVLASATPSLETIENARQG 399
Score = 25.4 bits (54), Expect = 0.42
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query 843 IERTAENIRNLVPEARVAVAHGQ--MRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPN 900
+ER AE + P+AR+ VA +E + + + + ++++ + I+ G P
Sbjct 576 VERLAEEAAHRFPKARMDVAASDTVTGPKEAAALATRIANHDIDLIIGTQIMAKGHHFPL 635
Query 901 ANTIIMERADKLGLA------------QLHQLRGRVGRS 927
+ + D LGL LHQ+ GR GR+
Sbjct 636 ITLVGVVDGD-LGLTGGDLRASERTHQLLHQVAGRAGRA 673
>Q56243 UvrABC system protein B [Thermus thermophilus (strain
ATCC 27634 / DSM 579 / HB8)]
Length=665
Score = 57.8 bits (138), Expect = 5e-11
Identities = 45/168 (27%), Positives = 71/168 (42%), Gaps = 20/168 (12%)
Query 160 RLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEIDTLKFFDPETQRTT 219
RL++ GY D G F +G +++I+ + + +PIR++LF DE++ + P T
Sbjct 172 RLLELGYQRNDIDLSPGRFRAKGEVLEIFPAYETEPIRVELFGDEVERISQVHPVTGERL 231
Query 220 ENLKQFRILPAKEFPLKEG--------------RSIFRERYAEAFPTANPKKNPIYQ-DV 264
L F + PA + EG R + E E K+ +Y ++
Sbjct 232 RELPGFVLFPATHYLSPEGLEEILKEIEKELWERVRYFEERGEVLYAQRLKERTLYDLEM 291
Query 265 LDGIAS-PGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDES 311
L + + PGVE Y F K E Y P + +V LDES
Sbjct 292 LRVMGTCPGVENYARYFTGKAPGEPPYTLLDYFPEDFLVF----LDES 335
Score = 32.3 bits (72), Expect = 0.003
Identities = 33/139 (24%), Positives = 60/139 (43%), Gaps = 10/139 (7%)
Query 845 RTAENIRNLVPE--ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNAN 902
R AE + + + E R H ++ E + +++ Y+ LV ++ G+D+P +
Sbjct 451 RMAEELTSFLVEHGIRARYLHHELDAFERQALIRDLRLGHYDCLVGINLLREGLDIPEVS 510
Query 903 TIIMERADKLG-LAQLHQLRGRVGRSHHQA------YAYLLVPSIKHLKGDAEKRLDAIQ 955
+ + ADK G L L +GR+ A YA + +++ + +R A+Q
Sbjct 511 LVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRR-RALQ 569
Query 956 RASTLGAGFMLATEDLEIR 974
A L G T E+R
Sbjct 570 EAYNLEHGITPETVRKEVR 588
Score = 24.3 bits (51), Expect = 0.93
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query 680 TLLAQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETV 739
T+L + E + IR L Q I DL+ G D +VG + LL+E +
Sbjct 446 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFERQALIRDLRLGHYDCLVGIN-LLREGL 504
Query 740 QFHDLGLMIVDEEHRFGVRDKER 762
++ L+ + + + G ER
Sbjct 505 DIPEVSLVAILDADKEGFLRSER 527
Lambda K H a alpha
0.321 0.137 0.389 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 19336198
Database: 77c7bd686babfda3c42ab47092513c7e.SwissProt.fasta
Posted date: May 20, 2024 9:56 AM
Number of letters in database: 18,803
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
