BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b67f8c84ea373fb765d46ee96710e03e.SwissProt.fasta
9 sequences; 1,897 total letters
Query= ACIAD1469
Length=152
Score E
Sequences producing significant alignments: (Bits) Value
P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli ... 93.2 2e-28
P35165 ECF RNA polymerase sigma factor SigX [Bacillus subtilis (s... 43.9 1e-09
B3Q6P8 ECF RNA polymerase sigma factor EcfG [Rhodopseudomonas pal... 40.0 2e-08
Q06909 RNA polymerase sigma factor CarQ [Myxococcus xanthus] 39.3 4e-08
P9WGH9 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberc... 33.1 6e-06
P9WGH8 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberc... 33.1 6e-06
P66808 ECF RNA polymerase sigma factor SigH [Mycobacterium bovis ... 33.1 6e-06
P39784 Positive control factor [Bacillus subtilis (strain 168)] 28.5 2e-04
Q8HY04 CD209 antigen [Papio hamadryas] 20.4 0.12
>P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli
(strain K12)]
Length=173
Score = 93.2 bits (230), Expect = 2e-28
Identities = 49/140 (35%), Positives = 88/140 (63%), Gaps = 3/140 (2%)
Query 1 LRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAY 60
L +KL + A D+ QDTF++++ + + L I++PR++L +IAK +++D RR +E+AY
Sbjct 28 LTRKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAY 86
Query 61 LDGLSQMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAE 120
L+ L+ M SPE++ ++ + L L+G++ K ++AF+L L+G T+ EIA
Sbjct 87 LEMLALMPE--GGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAH 144
Query 121 RLNVSTKMIQKYLASCLIQC 140
+L VS ++KY+A + C
Sbjct 145 KLGVSISSVKKYVAKAVEHC 164
>P35165 ECF RNA polymerase sigma factor SigX [Bacillus subtilis
(strain 168)]
Length=194
Score = 43.9 bits (102), Expect = 1e-09
Identities = 29/124 (23%), Positives = 63/124 (51%), Gaps = 2/124 (2%)
Query 9 DQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKR-IEQAYLDGLS-Q 66
+Q DL+Q+ +I++L + G + +L SIA+++ ID R+++ I Q L
Sbjct 28 NQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFRKQQTIRQRILGTFDWD 87
Query 67 MKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIAERLNVST 126
+ + D P++ + + ++ AL+ + + IL +++GY+ +E A+ L S
Sbjct 88 TQDVRDQQLLPDELAVQHENVREIYAALDQCTIDQRAVIILRFIQGYSIQETAKALRFSE 147
Query 127 KMIQ 130
++
Sbjct 148 SKVK 151
Score = 20.0 bits (40), Expect = 0.14
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 0/25 (0%)
Query 31 GIKEPRAYLTSIAKNLLIDQVRRKR 55
G+K R ++ + + L+ D+VR +R
Sbjct 157 GLKVLRKHMELLREELMDDEVRMER 181
>B3Q6P8 ECF RNA polymerase sigma factor EcfG [Rhodopseudomonas
palustris (strain TIE-1)]
Length=181
Score = 40.0 bits (92), Expect = 2e-08
Identities = 30/114 (26%), Positives = 52/114 (46%), Gaps = 6/114 (5%)
Query 6 GNTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLS 65
GN D+A DLVQ+T ++ L D A+L +I +NL R++R E DG
Sbjct 27 GNADRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRRREVEDADG-- 84
Query 66 QMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHKEIA 119
Y + P + + AL+ + + ++A IL G+++++ A
Sbjct 85 --SYAKTLKSQPGQTAHL--EFEEFRAALDKLPQDQREALILVGASGFSYEDAA 134
>Q06909 RNA polymerase sigma factor CarQ [Myxococcus xanthus]
Length=174
Score = 39.3 bits (90), Expect = 4e-08
Identities = 36/129 (28%), Positives = 63/129 (49%), Gaps = 13/129 (10%)
Query 1 LRQKLGNTDQAADLVQDTFIKLLQTRDELFGIKEPRA----YLTSIAKNLLIDQVRRKRI 56
L + + N A DL+Q TF+ ++++R G EP +L +IA N D +R +R
Sbjct 27 LARMVRNGALAEDLLQATFLSVIRSR----GRYEPGTRFIPWLMTIAANAARDALRHQRH 82
Query 57 EQAYLDGLSQMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQQAFILHYLEGYTHK 116
AY S+ A A+P+D ++ L AL+ + ++A +L +EG++ +
Sbjct 83 VDAY---ASREDTATPASAAPDDSDPSLR--RHLLDALQQLHPDHREAVVLSKVEGWSFE 137
Query 117 EIAERLNVS 125
EI +S
Sbjct 138 EIGALRGIS 146
>P9WGH9 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=216
Score = 33.1 bits (74), Expect = 6e-06
Identities = 29/122 (24%), Positives = 56/122 (46%), Gaps = 8/122 (7%)
Query 7 NTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQ 66
N A DL+Q+T +K +A+L I N I+ R+K+ + A
Sbjct 50 NPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQI 109
Query 67 MKYMLDAVASPED------QMQIIQAI--NQLCKALEGVSEKAQQAFILHYLEGYTHKEI 118
+ L + A +++ ++A+ ++ +AL+ + E+ + A +EG+ +KEI
Sbjct 110 TDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEI 169
Query 119 AE 120
AE
Sbjct 170 AE 171
>P9WGH8 ECF RNA polymerase sigma factor SigH [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=216
Score = 33.1 bits (74), Expect = 6e-06
Identities = 29/122 (24%), Positives = 56/122 (46%), Gaps = 8/122 (7%)
Query 7 NTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQ 66
N A DL+Q+T +K +A+L I N I+ R+K+ + A
Sbjct 50 NPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQI 109
Query 67 MKYMLDAVASPED------QMQIIQAI--NQLCKALEGVSEKAQQAFILHYLEGYTHKEI 118
+ L + A +++ ++A+ ++ +AL+ + E+ + A +EG+ +KEI
Sbjct 110 TDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEI 169
Query 119 AE 120
AE
Sbjct 170 AE 171
>P66808 ECF RNA polymerase sigma factor SigH [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=216
Score = 33.1 bits (74), Expect = 6e-06
Identities = 29/122 (24%), Positives = 56/122 (46%), Gaps = 8/122 (7%)
Query 7 NTDQAADLVQDTFIKLLQTRDELFGIKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQ 66
N A DL+Q+T +K +A+L I N I+ R+K+ + A
Sbjct 50 NPADAEDLLQETMVKAYAGFRSFRHGTNLKAWLYRILTNTYINSYRKKQRQPAEYPTEQI 109
Query 67 MKYMLDAVASPED------QMQIIQAI--NQLCKALEGVSEKAQQAFILHYLEGYTHKEI 118
+ L + A +++ ++A+ ++ +AL+ + E+ + A +EG+ +KEI
Sbjct 110 TDWQLASNAEHSSTGLRSAEVEALEALPDTEIKEALQALPEEFRMAVYYADVEGFPYKEI 169
Query 119 AE 120
AE
Sbjct 170 AE 171
>P39784 Positive control factor [Bacillus subtilis (strain 168)]
Length=169
Score = 28.5 bits (62), Expect = 2e-04
Identities = 24/117 (21%), Positives = 53/117 (45%), Gaps = 29/117 (25%)
Query 32 IKEPRAYLTSIAKNLLIDQVRRKRIEQAYLDGLSQMKYMLDAVASPEDQMQIIQAINQLC 91
IK+PR +I+ S M + D S ED+ +I +A+ L
Sbjct 78 IKDPR----------IIESFS------------SAMMFEPDGQVSEEDRDRIREALALL- 114
Query 92 KALEGVSEKAQQAFILHYLEGYTHKEIAERLNVSTKMIQKYLASCLIQCYQNRQDMD 148
+++ ++ F+LH +E ++++ IA+ L V +Q + ++ + +++M+
Sbjct 115 ------TDREKEMFLLHKVECFSYERIADLLGVKKSTVQTTIKRASLKMQRQQEEMN 165
>Q8HY04 CD209 antigen [Papio hamadryas]
Length=358
Score = 20.4 bits (41), Expect = 0.12
Identities = 10/46 (22%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 57 EQAYLDGLSQMKYMLDAVASPEDQMQIIQAINQLCKALEGVSEKAQ 102
+ A L+Q+K + ++ +I Q + +L A+ + EK++
Sbjct 74 QDAIYQNLTQLKAAVSELSEKSKLQEIYQELTRLKAAVGELPEKSK 119
Lambda K H a alpha
0.326 0.137 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 190400
Database: b67f8c84ea373fb765d46ee96710e03e.SwissProt.fasta
Posted date: May 30, 2024 8:51 AM
Number of letters in database: 1,897
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
