BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2a09c8c34dbc356c9141548e7c3b4c19.SwissProt.fasta
13 sequences; 6,187 total letters
Query= ACIAD1487
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
Q8G0Y6 Outer membrane efflux protein BepC [Brucella suis biovar 1... 105 8e-28
P24145 Nodulation protein T [Rhizobium leguminosarum bv. trifolii] 89.7 2e-22
P02930 Outer membrane protein TolC [Escherichia coli (strain K12)] 89.7 2e-22
Q9K2Y1 Outer membrane protein TolC [Vibrio cholerae serotype O1 (... 84.0 1e-20
Q54001 Outer membrane protein TolC [Salmonella enteritidis] 83.2 2e-20
Q03027 Alkaline protease secretion protein AprF [Pseudomonas aeru... 76.6 3e-18
Q51487 Outer membrane protein OprM [Pseudomonas aeruginosa (strai... 75.5 7e-18
P0C071 Multidrug/solvent efflux pump outer membrane protein MepC ... 68.6 1e-15
Q88N32 Probable efflux pump outer membrane protein TtgC [Pseudomo... 68.6 1e-15
Q9KJC1 Antibiotic efflux pump outer membrane protein ArpC [Pseudo... 68.6 1e-15
Q9WWZ8 Toluene efflux pump outer membrane protein TtgC [Pseudomon... 67.4 3e-15
O31101 Solvent efflux pump outer membrane protein SrpC [Pseudomon... 65.9 9e-15
Q93PU3 Toluene efflux pump outer membrane protein TtgI [Pseudomon... 65.9 9e-15
>Q8G0Y6 Outer membrane efflux protein BepC [Brucella suis biovar
1 (strain 1330)]
Length=456
Score = 105 bits (262), Expect = 8e-28
Identities = 91/398 (23%), Positives = 172/398 (43%), Gaps = 20/398 (5%)
Query 64 LINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTG-GNLSSSEQRGRQ 122
L A+ A K N + + + + Q+ N+ +A+S Y PQITG + G +++ R
Sbjct 34 LTGALVKAYKNNAPLNSSRAGVRIQDENVAIAKSAYRPQITGSYNISRGKTPATDYRTTG 93
Query 123 MYTISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVE 182
I QM++D + ++NV++ E ++ Q+ N+ Q +++ + +++
Sbjct 94 TVGIQLNQMLFDGFQTRNNVAAAETQVFAQRENLRNDEQNTLYQAVAAYMDVYQLRQIAA 153
Query 183 IAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTV 242
+ E+ + + A R G ++ D QA + +A AAL A R+ ++ +
Sbjct 154 LREKNLAAMNEQVRAARARLDVGEGTRTDVAQAEASRSTAIAALNAARADVKTAEATYMQ 213
Query 243 LLGFDAYDKSWSIPEDLVQVSDLYKEPD---------FNIIPNMLVAQAQVEVAKADKKQ 293
++G S+P+ L S P P +L + V A + K
Sbjct 214 VVG--------SLPDKLTPASAARHLPQSPSQAYASALASHPGILATKYAVNAAGYNVKA 265
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFA 353
+ + PT+ L S SQ + DG +S+ + N +Y GG +AQIR +
Sbjct 266 KEGALLPTIGLTASASQLDTIAGTDMG--DGNTASIGVGVNIPIYTGGRTSAQIRQSKEQ 323
Query 354 EEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKLGTRS 413
A+ +V+ V V A+ + +E + + R A + E+ K+G R+
Sbjct 324 LGQARIEVDVVQDKVRQAISSAWSQLEAARASVAANRDGIAAAQLALDGVIEERKVGQRT 383
Query 414 VLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTGR 451
LD+LNA+ + + L A +D+ + ++ TGR
Sbjct 384 TLDVLNAQNDLVAVQIALVQAEHDVVVASYALLNATGR 421
>P24145 Nodulation protein T [Rhizobium leguminosarum bv. trifolii]
Length=467
Score = 89.7 bits (221), Expect = 2e-22
Identities = 93/408 (23%), Positives = 179/408 (44%), Gaps = 56/408 (14%)
Query 60 NEIGLINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTGGNLSSSEQR 119
N+ L + V+ + +N + +AI + AN+ +A + P +T G+ + S Q+
Sbjct 56 NDPMLTSYVEQGISQNLDVQQAIERIDLAAANVTIAEASALPDLT----LSGSHTVSGQK 111
Query 120 GR---QMYTISAT------QMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATT 170
G+ Q YT + + + DFG K N S EA L A+V ++ + ++
Sbjct 112 GKLRKQTYTSNTSTGELSLSWLLDFGVYKRNTESAEAALDAAYASVDMAKLAFINDIISS 171
Query 171 VVNIERYKKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQR 230
V+ Y++ + +++ +K + + + + AG ++ D V+A V+S A + +
Sbjct 172 YVDARYYQRRLALSQANLKSRRETFELTKSKFAAGAVARMDVVRAEGLVQSTLAEIPSLD 231
Query 231 SLLRQNQQRLTVLLGFDA-----------------YDKSWSIPEDLVQVSDLYKEPDFNI 273
+ R + R+ LLG A D + IP D+++ PD
Sbjct 232 ANFRISAHRIATLLGKPAGSMVEEIAKGSNQPAFRADVNVGIPADIIR-----NRPDIRK 286
Query 274 IPNMLV-AQAQVEVAKADKKQTDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSL- 331
L + AQ+ VA+A +P+++L GS+S + G+N E G Y +++
Sbjct 287 AERDLADSTAQIGVAEA-------KLFPSITLSGSISPSG-GIN-----ERGVYGNLTPW 333
Query 332 ----EANTKLYQGGAVTAQIRSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIK 387
+ + GG + A + SA + K S L+ ++ V+ ++ + ++
Sbjct 334 SFGPKLKLPILDGGGLRADVDSAKSKATVSYLKWKSRVLNAIEQVENALVAMQREGRTVR 393
Query 388 VLRAREITAVKTRELYQEQYKLGTRSVLDLLNAEQAIHSSINELESAR 435
L+ A +T L YK G S+LDLL A++++ S+ + AR
Sbjct 394 ALKREVEIAQETLRLSTSSYKDGASSLLDLLEAQRSL--SVTQASLAR 439
>P02930 Outer membrane protein TolC [Escherichia coli (strain
K12)]
Length=493
Score = 89.7 bits (221), Expect = 2e-22
Identities = 87/414 (21%), Positives = 177/414 (43%), Gaps = 23/414 (6%)
Query 64 LINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGI----STGGNLSSSEQR 119
L+ Q A NP + ++ + A I+ ARS PQ+ G S G ++
Sbjct 25 LMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINS 84
Query 120 GRQMYTISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKK 179
++ TQ ++D K ++ ++ QE +Q T+ AT N+
Sbjct 85 NATSASLQLTQSIFDMSKWRA-LTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAID 143
Query 180 LVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQR 239
++ + Q + + R + R G+ + D AR+ ++ A + R+ L ++
Sbjct 144 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQ 203
Query 240 LTVLLGFDAYDKSWSIPEDLVQ------VSDLYKEPDFNIIPNMLVAQAQVEVAKADKKQ 293
L + G + Y + ++ + + V+ L KE + + ++L A+ ++A+ +Q
Sbjct 204 LRQITG-NYYPELAALNVENFKTDKPQPVNALLKEAEKRNL-SLLQARLSQDLAREQIRQ 261
Query 294 TDLSRYPTLSLVGSV---------SQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVT 344
PTL L S S+ + + + V L + +YQGG V
Sbjct 262 AQDGHLPTLDLTASTGISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVN 321
Query 345 AQIRSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQ 404
+Q++ A + A ++ S + V+ V+++ NI I + ++A + + +
Sbjct 322 SQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAME 381
Query 405 EQYKLGTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTGRSRNAYDL 458
Y +GTR+++D+L+A ++++ EL +ARY+ + + S G + N DL
Sbjct 382 AGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALG-TLNEQDL 434
>Q9K2Y1 Outer membrane protein TolC [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=438
Score = 84.0 bits (206), Expect = 1e-20
Identities = 82/391 (21%), Positives = 161/391 (41%), Gaps = 14/391 (4%)
Query 71 AVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTGGNLSSSEQRGRQMYTISA-- 128
A + +P + + A + +RS PQI ++ G N++ S+Q R+ +SA
Sbjct 32 AKENDPQLLSVAAQRDAAFEAVTSSRSALLPQIN--LTAGYNINRSDQAPRESDLLSAGI 89
Query 129 --TQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAEQ 186
+Q +Y S + + E + + + + + +VA + R + +E
Sbjct 90 NFSQELYQRSSWVS-LDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRA 148
Query 187 QVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLGF 246
+ + R + R + G+S+ D A++ + A + + L + + L + G
Sbjct 149 EKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQ 208
Query 247 D-----AYDKSWSIPEDLVQVSDLYKEPDFNIIPNMLVAQAQVEVAKADKKQTDLSRYPT 301
+ D + S+ E ++L A+ +VA+ + P+
Sbjct 209 EYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPS 268
Query 302 LSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTK--LYQGGAVTAQIRSAGFAEEAAKA 359
L+L G + N +N N Y+ + N K LY GG T+ + A FA AA
Sbjct 269 LTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQ 328
Query 360 KVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKLGTRSVLDLLN 419
+ + Y V+ V+ NI ++ I+A E + + +GTR+++D+L+
Sbjct 329 DLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLD 388
Query 420 AEQAIHSSINELESARYDIYSSLVQYISTTG 450
A + ++ + L +ARYD S++Q G
Sbjct 389 ATRRLYDANKNLSNARYDYILSVLQLRQAIG 419
>Q54001 Outer membrane protein TolC [Salmonella enteritidis]
Length=491
Score = 83.2 bits (204), Expect = 2e-20
Identities = 81/389 (21%), Positives = 164/389 (42%), Gaps = 19/389 (5%)
Query 64 LINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGI----STGGNLSSSEQR 119
L+ Q A NP + ++ + A I+ ARS PQ+ G S G ++
Sbjct 27 LMQVYQQARLSNPELRKSAADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINS 86
Query 120 GRQMYTISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKK 179
++ TQ ++D K + ++ QE +Q T+ A +
Sbjct 87 NETSASLQLTQTLFDMSKWRG-LTLQEKAAGIQDVTYQTDQQTLILNTANAYFKVLNAID 145
Query 180 LVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQR 239
++ + Q + + R + R G+ + D AR+ ++ A + R+ L +
Sbjct 146 VLSYTQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTVRNNLDNAVEE 205
Query 240 LTVLLGFDAYDKSWSIPEDLVQ------VSDLYKEPDFNIIPNMLVAQAQVEVAKADKKQ 293
L + G + Y + S+ + + V+ L KE + N ++L A+ ++A+ +Q
Sbjct 206 LRQVTG-NYYPELASLNVEHFKTDKPKAVNALLKEAE-NRNLSLLQARLSQDLAREQIRQ 263
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSS------VSLEANTKLYQGGAVTAQI 347
PTL+L S + + + + S + L + LYQGG V +Q+
Sbjct 264 AQDGHLPTLNLTPSTGISDTSYSGSKTNAAQYDDSNMGQNKIGLNFSLPLYQGGMVNSQV 323
Query 348 RSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQY 407
+ A + A ++ S + V+ V+++ NI I + ++A + + + Y
Sbjct 324 KQAQYNFVGASEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGY 383
Query 408 KLGTRSVLDLLNAEQAIHSSINELESARY 436
+GTR+++D+L+A ++ + +L +ARY
Sbjct 384 SVGTRTIVDVLDATTTLYDAKQQLANARY 412
>Q03027 Alkaline protease secretion protein AprF [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=481
Score = 76.6 bits (187), Expect = 3e-18
Identities = 93/408 (23%), Positives = 162/408 (40%), Gaps = 47/408 (12%)
Query 62 IGLINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTGGNLSSSEQRGR 121
+GL++ +A++ +P AI A + R+ P++ S RGR
Sbjct 25 LGLLDGYHLALENDPQFQAAIQEHEAGRQYRALGRAALLPRLV----------YSYNRGR 74
Query 122 QMYTISATQMVYDFGKVKSNVSSQEARLQLQQ---------------ANVLVSIDTIATQ 166
++ T DF K + S + L LQQ A L+S + +Q
Sbjct 75 SWSDVTQTTTRGDF-KEDRDYDSYVSTLSLQQPLFDYEAFSRYRKGVAQALLSDERFRSQ 133
Query 167 VATTVVNI-ERY------KKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYV 219
+V + E Y + +E+A Q + + + + + + G ++ D ++ ++
Sbjct 134 SQELLVRVLEAYTGALLAQDQIELARAQKRSYREQFQLNQRQFERGNGTRTDTLETQARF 193
Query 220 ESAQAALIAQRSLLRQNQQRLTVLLGFDAYDKSWSIPEDLVQVSDL-------YKEPDFN 272
AQA I R + L L+G + + QV L +++
Sbjct 194 NLAQAQEIEARDSQDAALRELERLVGAPLEIADLAPLGERFQVRPLSPASYTAWRDLALA 253
Query 273 IIPNMLVAQAQVEVAKADKKQTDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLE 332
P + + V+VA+ + +Q P L L S ++ +G N N+ SV ++
Sbjct 254 ENPELASLRHAVDVARYEVEQNRADFLPRLGLYASTGKSKSGSENTYNQRYET-DSVGIQ 312
Query 333 ANTKLYQGGAVTAQIRSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAR 392
+ L+ GG A R A E + ++ V + + R+ +RA
Sbjct 313 LSVPLFSGGETLAATRQATHRMEKSHYDLDD---KVRETLNQVRKMYNQSSSSAAKIRAY 369
Query 393 EITAVKTRELYQEQYK---LGTRSVLDLLNAEQAIHSSINELESARYD 437
E+T R L K G R LDLLNAEQA++S++NEL A+YD
Sbjct 370 EMTVDSARTLVMATRKSIAAGVRVNLDLLNAEQALYSAMNELSKAKYD 417
>Q51487 Outer membrane protein OprM [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=485
Score = 75.5 bits (184), Expect = 7e-18
Identities = 97/444 (22%), Positives = 192/444 (43%), Gaps = 51/444 (11%)
Query 47 AVDNNTGPVESRLNEIG---------LINAVQIAVKRNPSIGEAISTMAAQNANIDVARS 97
A NTG +IG L + +A++ N + A + A A + R+
Sbjct 40 AYGQNTGAAAVPAADIGWREFFRDPQLQQLIGVALENNRDLRVAALNVEAFRAQYRIQRA 99
Query 98 QYFPQI-----------TGGISTGGNLSSSEQRGRQMYTISATQMVYD-FGKVKS-NVSS 144
FP+I G +ST G+ + S Q G T+ T D FG+++S +
Sbjct 100 DLFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYG---VTLGTTAWELDLFGRLRSLRDQA 156
Query 145 QEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAEQQVKGLQRIQNIAELRAQA 204
E L +QA T+ VAT + ++ + +++ + + Q+ ++ +
Sbjct 157 LEQYLATEQAQRSAQT-TLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDV 215
Query 205 GISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLGFDAYDKSWSIPEDLVQVSD 264
G++S D QA++ VE A+A L L+ Q+Q L +LLG ++P+ L
Sbjct 216 GVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGSGI---PANLPQGLGLDQT 272
Query 265 LYKEPDFNI-------IPNMLVAQAQVEVAKADKKQTDLSRYPTLSL---VGSVSQAANG 314
L E + P++L A+ Q+ A A + +P++SL G++S+ +G
Sbjct 273 LLTEVPAGLPSDLLQRRPDILEAEHQLMAANASIGAARAAFFPSISLTANAGTMSRQLSG 332
Query 315 VNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFAEEAAKAK----VNSVYLDVMD 370
+ + + F S+ N ++ G++ A + A ++ A+ + + + +V D
Sbjct 333 LFDAGSGSWLFQPSI----NLPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVAD 388
Query 371 AVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKLGTRSVLDLLNAEQAIHSSINE 430
+ E Q Q +++A + + +L ++Y+ G + L LL+A++++ ++ +
Sbjct 389 GLAARGTFTEQLQAQRDLVKASD----EYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQ 444
Query 431 LESARYDIYSSLVQYISTTGRSRN 454
L + R + +S V G N
Sbjct 445 LITDRLNQLTSEVNLYKALGGGWN 468
Score = 32.0 bits (71), Expect = 4e-04
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query 356 AAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKLGTRSVL 415
A + S ++ +V T ++ Q Q+++ + T K+ +L Q Y +G S L
Sbjct 162 ATEQAQRSAQTTLVASVATAYLTLKADQAQLQLTKDTLGTYQKSFDLTQRSYDVGVASAL 221
Query 416 DLLNAEQAIHSSINELESARYDIYSSLVQYISTTGRSRNA 455
DL A+ A+ E AR ++L QY + +NA
Sbjct 222 DLRQAQTAV-------EGAR----ATLAQYTRLVAQDQNA 250
>P0C071 Multidrug/solvent efflux pump outer membrane protein MepC
[Pseudomonas putida]
Length=484
Score = 68.6 bits (166), Expect = 1e-15
Identities = 85/401 (21%), Positives = 174/401 (43%), Gaps = 24/401 (6%)
Query 68 VQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQI--TGGIS---TGGNLSSSEQRG-R 121
+Q ++ N + A + A A + R+ FP + TG S N+S + + G
Sbjct 69 IQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESGIT 128
Query 122 QMYTISATQMVYD---FGKVKS-NVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERY 177
Y+ + Y+ FG+V+S + E L +QA I +A+ VA +
Sbjct 129 SQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS-VANAYYTWQAD 187
Query 178 KKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQ 237
+ L ++ E+ +K + N+ + G++S D QAR+ VE A+ + L+ Q+
Sbjct 188 QALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQDV 247
Query 238 QRLTVLLGFD-AYDKSWSIPEDLVQVSDLYKEPDFNII---PNMLVAQAQVEVAKADKKQ 293
LTVLLG D + + D Q++++ +I+ P++ A+ ++ A A+
Sbjct 248 NSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANANIGA 307
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFA 353
+ +P++SL + + + + + G + + N ++ G++ A + +
Sbjct 308 ARAAFFPSISLTANAGSLSPDMGHLFSGGQGTW-LFQPQINLPIFNAGSLKASLDYSKIQ 366
Query 354 EEAAKAK----VNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKL 409
++ AK + + + +V D + + E Q Q +++A + L + +Y++
Sbjct 367 KDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQ----DYYRLAERRYRI 422
Query 410 GTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
G S L L+A++ + S+ L R +S V G
Sbjct 423 GIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 58.5 bits (140), Expect = 2e-12
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (4%)
Query 72 VKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTG------GNLSSSEQRGRQMYT 125
++R P I EA + A NANI AR+ +FP I+ + G G+L S Q G ++
Sbjct 285 LQRRPDIQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQ-GTWLFQ 343
Query 126 ISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAE 185
+++ G +K+++ + + + A +I T +V+ + + +++ ++
Sbjct 344 PQINLPIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQR 403
Query 186 QQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLG 245
V+ Q +AE R + GI S + A+ + SAQ ALI R ++ L LG
Sbjct 404 DLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Query 246 FDAYDKS 252
Y+++
Sbjct 464 GGWYEQT 470
>Q88N32 Probable efflux pump outer membrane protein TtgC [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=484
Score = 68.6 bits (166), Expect = 1e-15
Identities = 85/401 (21%), Positives = 174/401 (43%), Gaps = 24/401 (6%)
Query 68 VQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQI--TGGIS---TGGNLSSSEQRG-R 121
+Q ++ N + A + A A + R+ FP + TG S N+S + + G
Sbjct 69 IQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESGIT 128
Query 122 QMYTISATQMVYD---FGKVKS-NVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERY 177
Y+ + Y+ FG+V+S + E L +QA I +A+ VA +
Sbjct 129 SQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS-VANAYYTWQAD 187
Query 178 KKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQ 237
+ L ++ E+ +K + N+ + G++S D QAR+ VE A+ + L+ Q+
Sbjct 188 QALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQDV 247
Query 238 QRLTVLLGFD-AYDKSWSIPEDLVQVSDLYKEPDFNII---PNMLVAQAQVEVAKADKKQ 293
LTVLLG D + + D Q++++ +I+ P++ A+ ++ A A+
Sbjct 248 NSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANANIGA 307
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFA 353
+ +P++SL + + + + + G + + N ++ G++ A + +
Sbjct 308 ARAAFFPSISLTANAGSLSPDMGHLFSGGQGTW-LFQPQINLPIFNAGSLKASLDYSKIQ 366
Query 354 EEAAKAK----VNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKL 409
++ AK + + + +V D + + E Q Q +++A + L + +Y++
Sbjct 367 KDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQ----DYYRLAERRYRI 422
Query 410 GTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
G S L L+A++ + S+ L R +S V G
Sbjct 423 GIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 58.5 bits (140), Expect = 2e-12
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (4%)
Query 72 VKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTG------GNLSSSEQRGRQMYT 125
++R P I EA + A NANI AR+ +FP I+ + G G+L S Q G ++
Sbjct 285 LQRRPDIQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQ-GTWLFQ 343
Query 126 ISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAE 185
+++ G +K+++ + + + A +I T +V+ + + +++ ++
Sbjct 344 PQINLPIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQR 403
Query 186 QQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLG 245
V+ Q +AE R + GI S + A+ + SAQ ALI R ++ L LG
Sbjct 404 DLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Query 246 FDAYDKS 252
Y+++
Sbjct 464 GGWYEQT 470
>Q9KJC1 Antibiotic efflux pump outer membrane protein ArpC [Pseudomonas
putida]
Length=484
Score = 68.6 bits (166), Expect = 1e-15
Identities = 85/401 (21%), Positives = 174/401 (43%), Gaps = 24/401 (6%)
Query 68 VQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQI--TGGIS---TGGNLSSSEQRG-R 121
+Q ++ N + A + A A + R+ FP + TG S N+S + + G
Sbjct 69 IQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESGIT 128
Query 122 QMYTISATQMVYD---FGKVKS-NVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERY 177
Y+ + Y+ FG+V+S + E L +QA I +A+ VA +
Sbjct 129 SQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS-VANAYYTWQAD 187
Query 178 KKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQ 237
+ L ++ E+ +K + N+ + G++S D QAR+ VE A+ + L+ Q+
Sbjct 188 QALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQDV 247
Query 238 QRLTVLLGFD-AYDKSWSIPEDLVQVSDLYKEPDFNII---PNMLVAQAQVEVAKADKKQ 293
LTVLLG D + + D Q++++ +I+ P++ A+ ++ A A+
Sbjct 248 NSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANANIGA 307
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFA 353
+ +P++SL + + + + + G + + N ++ G++ A + +
Sbjct 308 ARAAFFPSISLTANAGSLSPDMGHLFSGGQGTW-LFQPQINLPIFNAGSLKASLDYSKIQ 366
Query 354 EEAAKAK----VNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKL 409
++ AK + + + +V D + + E Q Q +++A + L + +Y++
Sbjct 367 KDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQ----DYYRLAERRYRI 422
Query 410 GTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
G S L L+A++ + S+ L R +S V G
Sbjct 423 GIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 58.5 bits (140), Expect = 2e-12
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (4%)
Query 72 VKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTG------GNLSSSEQRGRQMYT 125
++R P I EA + A NANI AR+ +FP I+ + G G+L S Q G ++
Sbjct 285 LQRRPDIQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFSGGQ-GTWLFQ 343
Query 126 ISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAE 185
+++ G +K+++ + + + A +I T +V+ + + +++ ++
Sbjct 344 PQINLPIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQR 403
Query 186 QQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLG 245
V+ Q +AE R + GI S + A+ + SAQ ALI R ++ L LG
Sbjct 404 DLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Query 246 FDAYDKS 252
Y+++
Sbjct 464 GGWYEQT 470
>Q9WWZ8 Toluene efflux pump outer membrane protein TtgC [Pseudomonas
putida (strain DOT-T1E)]
Length=484
Score = 67.4 bits (163), Expect = 3e-15
Identities = 85/401 (21%), Positives = 173/401 (43%), Gaps = 24/401 (6%)
Query 68 VQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQI--TGGIS---TGGNLSSSEQRG-R 121
+Q ++ N + A + A A + R+ FP + TG S N+S + + G
Sbjct 69 IQTSLVNNRDLRVAALNLDAYRAQYRIQRADLFPAVSATGSGSRQRVPANMSQTGESGIT 128
Query 122 QMYTISATQMVYD---FGKVKS-NVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERY 177
Y+ + Y+ FG+V+S + E L +QA I +A+ VA +
Sbjct 129 SQYSATLGVSAYELDLFGRVRSLTEQALETYLSSEQARRSTQIALVAS-VANAYYTWQAD 187
Query 178 KKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQ 237
+ L ++ E+ +K + N+ + G++S D QAR+ VE A+ + L+ Q+
Sbjct 188 QALFKLTEETLKTYEESYNLTRRSNEVGVASALDVSQARTAVEGARVKYSQYQRLVAQDV 247
Query 238 QRLTVLLGFD-AYDKSWSIPEDLVQVSDLYKEPDFNII---PNMLVAQAQVEVAKADKKQ 293
LTVLLG D + + D Q++++ +I+ P++ A+ ++ A A+
Sbjct 248 NSLTVLLGTGIPADLAKPLELDADQLAEVPAGLPSDILQRRPDIQEAEHLLKAANANIGA 307
Query 294 TDLSRYPTLSLVGSVSQAANGVNNNNNKEDGFYSSVSLEANTKLYQGGAVTAQIRSAGFA 353
+ +P++SL + + + + G + + N ++ G++ A + +
Sbjct 308 ARAAFFPSISLTANAGSLSPDMGHLFAGGQGTW-LFQPQINLPIFNAGSLKASLDYSKIQ 366
Query 354 EEAAKAK----VNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAVKTRELYQEQYKL 409
++ AK + + + +V D + + E Q Q +++A + L + +Y++
Sbjct 367 KDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQRDLVQANQ----DYYRLAERRYRI 422
Query 410 GTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
G S L L+A++ + S+ L R +S V G
Sbjct 423 GIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Score = 57.4 bits (137), Expect = 4e-12
Identities = 46/187 (25%), Positives = 88/187 (47%), Gaps = 7/187 (4%)
Query 72 VKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTG------GNLSSSEQRGRQMYT 125
++R P I EA + A NANI AR+ +FP I+ + G G+L + Q G ++
Sbjct 285 LQRRPDIQEAEHLLKAANANIGAARAAFFPSISLTANAGSLSPDMGHLFAGGQ-GTWLFQ 343
Query 126 ISATQMVYDFGKVKSNVSSQEARLQLQQANVLVSIDTIATQVATTVVNIERYKKLVEIAE 185
+++ G +K+++ + + + A +I T +V+ + + +++ ++
Sbjct 344 PQINLPIFNAGSLKASLDYSKIQKDINVAKYEKTIQTAFQEVSDGLAARKTFEEQLQAQR 403
Query 186 QQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRSLLRQNQQRLTVLLG 245
V+ Q +AE R + GI S + A+ + SAQ ALI R ++ L LG
Sbjct 404 DLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALG 463
Query 246 FDAYDKS 252
Y+++
Sbjct 464 GGWYEQT 470
>O31101 Solvent efflux pump outer membrane protein SrpC [Pseudomonas
putida]
Length=470
Score = 65.9 bits (159), Expect = 9e-15
Identities = 102/416 (25%), Positives = 175/416 (42%), Gaps = 47/416 (11%)
Query 64 LINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTGGNLS--------S 115
L+ + A++ N + A + + A + R++ FP + G S GN + +
Sbjct 65 LVRLLDAALENNRDLRIAAKNVESYRALYRIQRAERFPTLDGQAS--GNRTRLPDDLSPT 122
Query 116 SEQRGRQMYTIS-ATQMVYD-FGKVKSNVSSQ--EARLQLQQANVLVSIDTIATQVATTV 171
+ R Y + T D FG+++S +S+Q E L ++A V I I VATT
Sbjct 123 GDSRIDSQYQVGLVTAYELDLFGRIRS-LSNQALEKYLATEEAQRSVQIALIG-DVATTY 180
Query 172 VNIERYKKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRS 231
+ L+E+ E + + E A AG SS+ D QAR+ V AQA
Sbjct 181 FLWRTDQALLELTEATLTSYVESLAMIESSAWAGTSSELDVRQARTLVNQAQAQQALYTR 240
Query 232 LLRQNQQRLTVLLGFDAYDKSWSIPEDL-----VQVSDLYKEP-----DFNI-IPNMLVA 280
+ Q+ L +LLG IP DL + +S L K P D + P++ A
Sbjct 241 RIAQDVNALELLLGS-------KIPTDLPKNSPLAMSALGKVPAGLPADLLLNRPDIRSA 293
Query 281 QAQVEVAKADKKQTDLSRYPTLSL---VGSVSQAANGVNNNNNKEDGFYSSVSLEANTKL 337
+ Q+ A A+ + +P +SL GS S +G+ N+ + F +S+ +
Sbjct 294 EHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQISV----PI 349
Query 338 YQGGAVTAQIRSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAV 397
+ G + A + +AE V + + A + + + + K L A+
Sbjct 350 FNAGKLRANL---DYAELQKDVGVATYEKSIQTAFREVADGLAARGTYGKQLSAQSELVD 406
Query 398 KTR---ELYQEQYKLGTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
+ L Q++Y G S L +L+A++ + SS +L + + D +S VQ G
Sbjct 407 NYKAYFSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQLYKALG 462
Score = 18.9 bits (37), Expect = 5.1
Identities = 33/144 (23%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query 46 VAVDNNTGPVESRLNEIGLINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQ------- 98
+++ + G S L+ GL N+ + P I I AN+D A Q
Sbjct 315 ISLTASAGSASSDLD--GLFNSGSDSWSFAPQISVPIFNAGKLRANLDYAELQKDVGVAT 372
Query 99 -------YFPQITGGISTGGNL-----SSSEQRGRQMYTISATQMVYDFGKVKSNVSSQE 146
F ++ G++ G + SE S Q YD G V S ++ +
Sbjct 373 YEKSIQTAFREVADGLAARGTYGKQLSAQSELVDNYKAYFSLAQQRYDQG-VDSYLTVLD 431
Query 147 ARLQL---QQANVLVSIDTIATQV 167
A+ +L QQ + +D I ++V
Sbjct 432 AQRELFSSQQKLLNDQLDQINSEV 455
>Q93PU3 Toluene efflux pump outer membrane protein TtgI [Pseudomonas
putida (strain DOT-T1E)]
Length=470
Score = 65.9 bits (159), Expect = 9e-15
Identities = 102/416 (25%), Positives = 175/416 (42%), Gaps = 47/416 (11%)
Query 64 LINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQYFPQITGGISTGGNLS--------S 115
L+ + A++ N + A + + A + R++ FP + G S GN + +
Sbjct 65 LVRLLDAALENNRDLRIAAKNVESYRALYRIQRAERFPTLDGQAS--GNRTRLPDDLSPT 122
Query 116 SEQRGRQMYTIS-ATQMVYD-FGKVKSNVSSQ--EARLQLQQANVLVSIDTIATQVATTV 171
+ R Y + T D FG+++S +S+Q E L ++A V I I VATT
Sbjct 123 GDSRIDSQYQVGLVTAYELDLFGRIRS-LSNQALEKYLATEEAQRSVQIALIG-DVATTY 180
Query 172 VNIERYKKLVEIAEQQVKGLQRIQNIAELRAQAGISSQADPVQARSYVESAQAALIAQRS 231
+ L+E+ E + + E A AG SS+ D QAR+ V AQA
Sbjct 181 FLWRTDQALLELTEATLTSYVESLAMIESSAWAGTSSELDVRQARTLVNQAQAQQALYTR 240
Query 232 LLRQNQQRLTVLLGFDAYDKSWSIPEDL-----VQVSDLYKEP-----DFNI-IPNMLVA 280
+ Q+ L +LLG IP DL + +S L K P D + P++ A
Sbjct 241 RIAQDVNALELLLGS-------KIPTDLPKNSPLAMSALGKVPAGLPADLLLNRPDIRSA 293
Query 281 QAQVEVAKADKKQTDLSRYPTLSL---VGSVSQAANGVNNNNNKEDGFYSSVSLEANTKL 337
+ Q+ A A+ + +P +SL GS S +G+ N+ + F +S+ +
Sbjct 294 EHQLMAANANIGAARAAFFPRISLTASAGSASSDLDGLFNSGSDSWSFAPQISV----PI 349
Query 338 YQGGAVTAQIRSAGFAEEAAKAKVNSVYLDVMDAVKTTRENIENKQEQIKVLRAREITAV 397
+ G + A + +AE V + + A + + + + K L A+
Sbjct 350 FNAGKLRANL---DYAELQKDVGVATYEKSIQTAFREVADGLAARGTYGKQLSAQSELVD 406
Query 398 KTR---ELYQEQYKLGTRSVLDLLNAEQAIHSSINELESARYDIYSSLVQYISTTG 450
+ L Q++Y G S L +L+A++ + SS +L + + D +S VQ G
Sbjct 407 NYKAYFSLAQQRYDQGVDSYLTVLDAQRELFSSQQKLLNDQLDQINSEVQLYKALG 462
Score = 18.9 bits (37), Expect = 5.1
Identities = 33/144 (23%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query 46 VAVDNNTGPVESRLNEIGLINAVQIAVKRNPSIGEAISTMAAQNANIDVARSQ------- 98
+++ + G S L+ GL N+ + P I I AN+D A Q
Sbjct 315 ISLTASAGSASSDLD--GLFNSGSDSWSFAPQISVPIFNAGKLRANLDYAELQKDVGVAT 372
Query 99 -------YFPQITGGISTGGNL-----SSSEQRGRQMYTISATQMVYDFGKVKSNVSSQE 146
F ++ G++ G + SE S Q YD G V S ++ +
Sbjct 373 YEKSIQTAFREVADGLAARGTYGKQLSAQSELVDNYKAYFSLAQQRYDQG-VDSYLTVLD 431
Query 147 ARLQL---QQANVLVSIDTIATQV 167
A+ +L QQ + +D I ++V
Sbjct 432 AQRELFSSQQKLLNDQLDQINSEV 455
Lambda K H a alpha
0.313 0.128 0.336 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2320080
Database: 2a09c8c34dbc356c9141548e7c3b4c19.SwissProt.fasta
Posted date: May 8, 2024 6:35 AM
Number of letters in database: 6,187
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
