BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2ba9478c77a5a98dce422ca1093f9f46.SwissProt.fasta
8 sequences; 3,215 total letters
Query= ACIAD1526
Length=358
Score E
Sequences producing significant alignments: (Bits) Value
P40400 Putative aliphatic sulfonates-binding protein [Bacillus su... 69.7 7e-17
P75853 Putative aliphatic sulfonates-binding protein [Escherichia... 48.9 5e-10
Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (stra... 47.8 1e-09
Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella s... 47.8 1e-09
Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus bio... 47.8 1e-09
Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis bi... 47.8 1e-09
Q47537 Taurine-binding periplasmic protein [Escherichia coli (str... 42.0 8e-08
A3QA31 RNA polymerase-associated protein RapA [Shewanella loihica... 36.6 6e-06
>P40400 Putative aliphatic sulfonates-binding protein [Bacillus
subtilis (strain 168)]
Length=332
Score = 69.7 bits (169), Expect = 7e-17
Identities = 67/243 (28%), Positives = 106/243 (44%), Gaps = 26/243 (11%)
Query 43 ANGTSGSLDF-----IGVPQLISQDQI------FLKALKQNHIELKWEPVTTAAVATLVN 91
ANG SG IG+ Q +S I F A ++ I++KW +
Sbjct 20 ANGASGDHKQLKEIRIGIQQSLSPLLIAKEKGWFEDAFEKEGIKVKWVEFQSGPPQF--- 76
Query 92 ESFLNNKIDFAFYGNLPAVVLNATGVKTQIVVPGGIGNNVY-LIVPENSPIKSIEELKGK 150
E +K+DF+ GN P + A G+ + + G ++V +NS I+ ++ LKGK
Sbjct 77 EGLAADKLDFSQVGNSPVIAGQAAGIDFKEIGLSQDGLKANGILVNQNSGIQDVKGLKGK 136
Query 151 KIALHRGRPWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDAFFTLSDALTLQ 210
KIA+ +G + + GLS D I+ L P A+A SVDA+ L+L+
Sbjct 137 KIAVAKGSSGFDFLYKALDQVGLSANDVTIIQLQPDEAASAFENGSVDAWSIWEPYLSLE 196
Query 211 D-RHLGKIIWSSQSL----PANWKMRAELWGSKRYIEQHPDTTQLLADATVRAMDWISHH 265
+H KI+ + +S P +R ++ E+HPD +A+ W H
Sbjct 197 TMKHGAKILVNGESTDLYSPGFTLVRT------KFSEEHPDEVVRFLKVFNKAVVWQKEH 250
Query 266 QDE 268
DE
Sbjct 251 LDE 253
>P75853 Putative aliphatic sulfonates-binding protein [Escherichia
coli (strain K12)]
Length=319
Score = 48.9 bits (115), Expect = 5e-10
Identities = 32/103 (31%), Positives = 47/103 (46%), Gaps = 1/103 (1%)
Query 99 IDFAFYGNLPAVVLNATGVKTQIV-VPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRG 157
ID G++P + A G V V ++V ENSPIK++ +LKG K+A +G
Sbjct 78 IDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKG 137
Query 158 RPWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDAF 200
+ ++ GL D Q L P AA +VDA+
Sbjct 138 SSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAW 180
>Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (strain
2308)]
Length=319
Score = 47.8 bits (112), Expect = 1e-09
Identities = 31/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (4%)
Query 99 IDFAFYGNLPAVVLNATGVKTQIVVPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRGR 158
+DF + G A+ L A+G K +IV +G + +I E KS+ +LKGKKI + G
Sbjct 77 LDFGYIGP-GALWLPASG-KAKIVAINSVGFSDRVIAQEG--FKSMADLKGKKIGVPEGT 132
Query 159 PWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDA 199
++ + G+ L D Q++ ++P +A ++K +DA
Sbjct 133 SGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDA 173
>Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella
suis biovar 1 (strain 1330)]
Length=319
Score = 47.8 bits (112), Expect = 1e-09
Identities = 31/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (4%)
Query 99 IDFAFYGNLPAVVLNATGVKTQIVVPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRGR 158
+DF + G A+ L A+G K +IV +G + +I E KS+ +LKGKKI + G
Sbjct 77 LDFGYIGP-GALWLPASG-KAKIVAINSVGFSDRVIAQEG--FKSMADLKGKKIGVPEGT 132
Query 159 PWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDA 199
++ + G+ L D Q++ ++P +A ++K +DA
Sbjct 133 SGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDA 173
>Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus
biovar 1 (strain 9-941)]
Length=319
Score = 47.8 bits (112), Expect = 1e-09
Identities = 31/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (4%)
Query 99 IDFAFYGNLPAVVLNATGVKTQIVVPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRGR 158
+DF + G A+ L A+G K +IV +G + +I E KS+ +LKGKKI + G
Sbjct 77 LDFGYIGP-GALWLPASG-KAKIVAINSVGFSDRVIAQEG--FKSMADLKGKKIGVPEGT 132
Query 159 PWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDA 199
++ + G+ L D Q++ ++P +A ++K +DA
Sbjct 133 SGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDA 173
>Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)]
Length=319
Score = 47.8 bits (112), Expect = 1e-09
Identities = 31/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (4%)
Query 99 IDFAFYGNLPAVVLNATGVKTQIVVPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRGR 158
+DF + G A+ L A+G K +IV +G + +I E KS+ +LKGKKI + G
Sbjct 77 LDFGYIGP-GALWLPASG-KAKIVAINSVGFSDRVIAQEG--FKSMADLKGKKIGVPEGT 132
Query 159 PWEINFGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDA 199
++ + G+ L D Q++ ++P +A ++K +DA
Sbjct 133 SGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDA 173
>Q47537 Taurine-binding periplasmic protein [Escherichia coli
(strain K12)]
Length=320
Score = 42.0 bits (97), Expect = 8e-08
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 5/156 (3%)
Query 105 GNLPAVVLNATGVKTQI-VVPGGIGNNVYLIVPENSPIKSIEELKGKKIALHRGRPWEIN 163
G+ P V + V ++ ++ +GN+ L+V + I E+L GK+IA+ +
Sbjct 79 GSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKT--ISKPEDLIGKRIAVPFISTTHYS 136
Query 164 FGQLIQSKGLSLKDFQIVNLNPQAGAAALSAKSVDAFFTLSDALTLQDRHLGKIIWSSQS 223
++ G+ +IVNL P A AA +D + + A+ ++ GK++ S+
Sbjct 137 LLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGDIDGAYVWAPAVNALEKD-GKVLTDSEQ 195
Query 224 LPANWKMRAELW-GSKRYIEQHPDTTQLLADATVRA 258
+ ++W K + E+HP+ + A + + A
Sbjct 196 VGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDA 231
Score = 17.3 bits (33), Expect = 5.6
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 5/27 (19%)
Query 123 VPGGIGNNVYLIVPENSPIKSIEELKG 149
VPG + N YL +P + EL G
Sbjct 263 VPGLVKGNTYL-----TPQQQTAELTG 284
>A3QA31 RNA polymerase-associated protein RapA [Shewanella loihica
(strain ATCC BAA-1088 / PV-4)]
Length=968
Score = 36.6 bits (83), Expect = 6e-06
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 16/138 (12%)
Query 209 LQDRH-LGKIIWSSQSLPANWKMRAELWG-SKRYIEQHPDTTQLLADATVRAMDWISHHQ 266
L DRH G++++ + RA + G R HP T R D +
Sbjct 408 LLDRHGTGRVLYRNS--------RASVKGFPTRIFNAHPQTMPAQYKTAARVSDMMGGQT 459
Query 267 DEFQQSQTKFGQPLSVIQRESQNTASTWQQDWSPDYQVDFLKQHYSKVIDHAVKNQLIQT 326
D + + P + Q ++AS W+ D D+ +DFLK H SK + + +T
Sbjct 460 DLTAKVKQALS-PEKLYQAFESDSASWWKFDPRVDWLIDFLKNHRSKKV--LIIASQAET 516
Query 327 PIKADELLNPKFTRQAIQ 344
+ +E L TR+ IQ
Sbjct 517 ALSLEEALR---TREGIQ 531
Score = 18.5 bits (36), Expect = 2.7
Identities = 8/26 (31%), Positives = 15/26 (58%), Gaps = 0/26 (0%)
Query 332 ELLNPKFTRQAIQNLQTDHSSNKQEN 357
ELLN K A++ ++ + N+Q +
Sbjct 373 ELLNEKDITPALRLIEDESVDNEQRD 398
Lambda K H a alpha
0.318 0.132 0.388 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 898982
Database: 2ba9478c77a5a98dce422ca1093f9f46.SwissProt.fasta
Posted date: May 19, 2024 9:07 PM
Number of letters in database: 3,215
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
