BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5c1e767df99fde9ae918ad3ea33e4ca2.SwissProt.fasta
           2 sequences; 758 total letters



Query= ACIAD1536

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P05853 Citrate utilization protein B [Escherichia coli]               469     2e-170
P37463 Citrate utilization protein B [Salmonella typhimurium (str...  464     2e-168


>P05853 Citrate utilization protein B [Escherichia coli]
Length=379

 Score = 469 bits (1208),  Expect = 2e-170
 Identities = 225/375 (60%), Positives = 271/375 (72%), Gaps = 3/375 (1%)

Query  1    MNASTKALIPVVQLSEHEQEVQRALQICNACRYCESFCAVFAAMTKRLEFNQADIHYLAN  60
            M    K +I    L+E E EV+R +Q+CNACRYCE FCAVF AMT+RLEF +ADI+YLAN
Sbjct  1    MKQLEKLIIEAKILTEPEAEVERVMQVCNACRYCEGFCAVFPAMTQRLEFGKADINYLAN  60

Query  61   LCHNCGACLHACQYAPPQEFGVNIPKAMAQVRLETYQEFATPQPLGRLYKSVGIPFVSVL  120
            LCHNCGACLHACQYAPP EF +N+PKAMA+VRLETYQ +A P   G LY+  G+     L
Sbjct  61   LCHNCGACLHACQYAPPHEFAINVPKAMAEVRLETYQHYAQPAAFGALYRQAGVTVTLAL  120

Query  121  TLIFFFCMLAVVWYKGTDLFAGYQGNFYAIFPHNFLALLFGATFSVAIVLLGIGISKFWR  180
                   +L  +  KG+ L     G+FY IFPHN LA +FG+ F +AI LL  G+ +FWR
Sbjct  121  VFSLILFLLLAMGLKGSLLHPPLAGDFYQIFPHNLLAWMFGSVFMLAIGLLMAGVIRFWR  180

Query  181  QTSNVIQGKVEKPDLVQASQNVLTLKYLDGGHGKGCNEQDDRYTQIRRVFHHLTFYGFML  240
            + S V     E   + +AS N LTLKYLDGGHGKGCNE DD +T +RR FHH TFYGFML
Sbjct  181  EISPVGPRPAE---IAEASHNALTLKYLDGGHGKGCNEADDAFTLMRRRFHHFTFYGFML  237

Query  241  CFAATIVATLYHYFLNLHAPYPILSVPVILGTLGGFGLVIGPSGLLYLNLKRHPLHGDRE  300
            CFAAT+VAT YHYF    APYP  SVPV+LGTLGG GL++GP+GLL+LNLKR  LHGD  
Sbjct  238  CFAATVVATGYHYFAGWEAPYPFFSVPVMLGTLGGIGLIVGPAGLLWLNLKRSSLHGDAR  297

Query  301  QKPVDRGFIFLLLIVSASGLALMVFRNTPYMALLLIFHLATVMTFFITMPFGKFAHGFYR  360
            QKP+DRGFI LLL+ S +G+ L+  R+T +M +LL  HL  VM  F+T+P+GKFAHGFYR
Sbjct  298  QKPMDRGFILLLLLTSLTGIGLLAGRDTSWMGILLAIHLGVVMALFLTIPYGKFAHGFYR  357

Query  361  SASLLKFAIENRTKK  375
             ASLLK+AIE R  K
Sbjct  358  CASLLKWAIEKRRGK  372


>P37463 Citrate utilization protein B [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=379

 Score = 464 bits (1194),  Expect = 2e-168
 Identities = 221/375 (59%), Positives = 271/375 (72%), Gaps = 3/375 (1%)

Query  1    MNASTKALIPVVQLSEHEQEVQRALQICNACRYCESFCAVFAAMTKRLEFNQADIHYLAN  60
            M    K +I    L+E E EV+R +Q+CNACRYCE FCAVF AMT+RLEF +ADIHYLAN
Sbjct  1    MKQLEKLIIEATVLTEPEAEVERVMQVCNACRYCEGFCAVFPAMTQRLEFGKADIHYLAN  60

Query  61   LCHNCGACLHACQYAPPQEFGVNIPKAMAQVRLETYQEFATPQPLGRLYKSVGIPFVSVL  120
            LCHNCGACLHACQYAPP EF +N+PKAMAQ RLETYQ++A P   G LY+  GI     L
Sbjct  61   LCHNCGACLHACQYAPPHEFAINVPKAMAQARLETYQQYAQPAAFGALYRRAGITVALAL  120

Query  121  TLIFFFCMLAVVWYKGTDLFAGYQGNFYAIFPHNFLALLFGATFSVAIVLLGIGISKFWR  180
             +     +L  +  KG+ +     G+FY IFPH+ LA +FG+ F +AI LL  G+ +FWR
Sbjct  121  IVGLTLFLLLAMALKGSLIHPPLAGDFYQIFPHSLLAWMFGSVFVLAIGLLMAGVIRFWR  180

Query  181  QTSNVIQGKVEKPDLVQASQNVLTLKYLDGGHGKGCNEQDDRYTQIRRVFHHLTFYGFML  240
            + S    G     ++ +AS N LTLKYLDGGHGKGCNE DD +T +RR FHH TFYGFML
Sbjct  181  EIS---PGVPRSAEIAEASHNALTLKYLDGGHGKGCNEADDAFTLLRRRFHHFTFYGFML  237

Query  241  CFAATIVATLYHYFLNLHAPYPILSVPVILGTLGGFGLVIGPSGLLYLNLKRHPLHGDRE  300
            CFAAT+VAT YHY     APYP  S+PV+LGTLGG GL+IGP+GLL+LNL+R PLHGD  
Sbjct  238  CFAATVVATGYHYVAGWEAPYPFFSLPVMLGTLGGIGLLIGPAGLLWLNLRRSPLHGDAR  297

Query  301  QKPVDRGFIFLLLIVSASGLALMVFRNTPYMALLLIFHLATVMTFFITMPFGKFAHGFYR  360
            QKP+DRGFI LL + S +GLAL+  R+T  M +LL  HL  VM  F+T+P+GKFAHGF+R
Sbjct  298  QKPMDRGFILLLFLTSLTGLALLAGRDTSGMGILLALHLGVVMALFLTLPYGKFAHGFFR  357

Query  361  SASLLKFAIENRTKK  375
             A+LLK+A+E R  K
Sbjct  358  CAALLKWAVEKRRGK  372



Lambda      K        H        a         alpha
   0.331    0.144    0.454    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 234608


  Database: 5c1e767df99fde9ae918ad3ea33e4ca2.SwissProt.fasta
    Posted date:  May 9, 2024  12:32 PM
  Number of letters in database: 758
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40