BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 3dfaebb5880b49d5faf6e4fb623941d7.SwissProt.fasta
           1 sequences; 276 total letters



Query= ACIAD1552

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q00462 Probable transposase for insertion sequence element IS702 ...  32.7    1e-07


>Q00462 Probable transposase for insertion sequence element IS702 
[Microchaete diplosiphon]
Length=276

 Score = 32.7 bits (73),  Expect = 1e-07
 Identities = 16/26 (62%), Positives = 20/26 (77%), Gaps = 1/26 (4%)

Query  17   NVVIIDVTEIPIQRPKK-QSSCHSGK  41
            N+V++DVTE PI+RPKK Q    SGK
Sbjct  114  NLVVMDVTESPIERPKKSQKKFFSGK  139


 Score = 18.1 bits (35),  Expect = 0.023
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 0/25 (0%)

Query  8    ISAGEGIDWNVVIIDVTEIPIQRPK  32
            + A +G      I  ++E PI++PK
Sbjct  187  VIADKGYQGITKIHKLSETPIKKPK  211



Lambda      K        H        a         alpha
   0.327    0.141    0.439    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 12838


  Database: 3dfaebb5880b49d5faf6e4fb623941d7.SwissProt.fasta
    Posted date:  May 8, 2024  9:43 PM
  Number of letters in database: 276
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40