BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: dc12296b0df54aa0974eedac77fa8f4f.SwissProt.fasta
           1 sequences; 112 total letters



Query= ACIAD1564

Length=43
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q79E92 Putative transposase YkgN [Escherichia coli (strain K12)]      32.7    2e-08


>Q79E92 Putative transposase YkgN [Escherichia coli (strain K12)]
Length=112

 Score = 32.7 bits (73),  Expect = 2e-08
 Identities = 14/23 (61%), Positives = 17/23 (74%), Gaps = 0/23 (0%)

Query  1   MSGQRYTPEFKDEAVKLITERGY  23
           MSG+RY  EFK EAVK + + GY
Sbjct  1   MSGKRYPEEFKTEAVKQVVDLGY  23



Lambda      K        H        a         alpha
   0.332    0.141    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3922


  Database: dc12296b0df54aa0974eedac77fa8f4f.SwissProt.fasta
    Posted date:  May 30, 2024  3:58 PM
  Number of letters in database: 112
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40