BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 77c8c8cadde0e4befcd3b521a8fb527d.SwissProt.fasta
9 sequences; 2,907 total letters
Query= ACIAD1593
Length=360
Score E
Sequences producing significant alignments: (Bits) Value
P40400 Putative aliphatic sulfonates-binding protein [Bacillus su... 82.4 3e-21
P75853 Putative aliphatic sulfonates-binding protein [Escherichia... 65.5 2e-15
Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (stra... 61.2 4e-14
Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella s... 61.2 4e-14
Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus bio... 61.2 4e-14
Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis bi... 61.2 4e-14
Q47537 Taurine-binding periplasmic protein [Escherichia coli (str... 47.8 1e-09
C0QY54 Putative ABC transporter periplasmic binding protein BHWA1... 42.7 5e-08
P44658 Putative thiamine biosynthesis protein HI_0357 [Haemophilu... 38.5 1e-06
>P40400 Putative aliphatic sulfonates-binding protein [Bacillus
subtilis (strain 168)]
Length=332
Score = 82.4 bits (202), Expect = 3e-21
Identities = 93/350 (27%), Positives = 155/350 (44%), Gaps = 40/350 (11%)
Query 5 MKPSIFKKLILLSLLAFGHASYA----ESLKTIRIG-----SPDLTAGQKHAGGGVVDVL 55
MK + + ++ LLA A+ A + LK IRIG SP L A +K
Sbjct 1 MKKGLIVLVAVIFLLAGCGANGASGDHKQLKEIRIGIQQSLSPLLIAKEKG--------- 51
Query 56 YNKKWLEQELAKKNVKVEWHFFKGAGPAINEALANNQLDFAFLGDLPPIIGKANGLDTQL 115
W E K+ +KV+W F+ +GP E LA ++LDF+ +G+ P I G+A G+D +
Sbjct 52 ----WFEDAFEKEGIKVKWVEFQ-SGPPQFEGLAADKLDFSQVGNSPVIAGQAAGIDFKE 106
Query 116 LVPTARGI-TNYLAVRSDLPIKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRV 174
+ + G+ N + V + I++ LKGK++ + +G++ AL+ GL +DV +
Sbjct 107 IGLSQDGLKANGILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTI 166
Query 175 VNLDFNAVNAALAAKKIDA--SWGPSRFFALRD-KHIVNLPIS--SRQLNGAGSTQGVFL 229
+ L + +A +DA W P + +L KH + ++ S L G T L
Sbjct 167 IQLQPDEAASAFENGSVDAWSIWEP--YLSLETMKHGAKILVNGESTDLYSPGFT----L 220
Query 230 GRQSFIRQHPNETQQVVTQVVKGLNWLSNEQNRVPQVALFFTQSGYPASIYAQELNGVNL 289
R F +HP+E + + K + W + L+ + L N
Sbjct 221 VRTKFSEEHPDEVVRFLKVFNKAVVWQKEHLDEAAD--LYSDIKDLDKKVVENVLK--NT 276
Query 290 KFLYSPLFDGYYTQQLQQKITLATQQGLIRKNIDVKSWINPLFVNQALEQ 339
+ L + D Q Q+ + I K IDVK ++ F+ +ALE+
Sbjct 277 EPLNEIISDDIVKAQ-QETADFQFRTKAIDKKIDVKDVVDNTFIKKALEE 325
>P75853 Putative aliphatic sulfonates-binding protein [Escherichia
coli (strain K12)]
Length=319
Score = 65.5 bits (158), Expect = 2e-15
Identities = 75/283 (27%), Positives = 114/283 (40%), Gaps = 29/283 (10%)
Query 71 KVEWHFFKGAGPAINEALANNQLDFAFLGDLPPIIGKANGLDTQLL-VPTARGITNYLAV 129
K+ W F AGP + EAL +D GD+PPI +A G D + V + + V
Sbjct 57 KISWVEFP-AGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILV 115
Query 130 RSDLPIKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAK 189
+ PIK A+LKG +V +G++ + AL GLK +D++ L AA
Sbjct 116 AENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQG 175
Query 190 KIDA--SWGPSRFFALRDKHIVNLPISSRQLNGAGSTQGVFLGRQSFIRQHPNETQQVVT 247
+DA W P AL + L LN GS +L + + ++ Q V+
Sbjct 176 NVDAWAIWDPYYSAALLQGGVRVLK-DGTDLNQTGS---FYLAARPYAEKNGAFIQGVLA 231
Query 248 QVVKGLNWLSNEQNRVPQVALFFTQSGYPASIYAQELNGVNLKFLYSPLFDGYYTQQLQQ 307
+ + L+ Q R +AL G PA + A L+ P+ Q QQ
Sbjct 232 TFSEA-DALTRSQ-REQSIALLAKTMGLPAPVIASYLDH-RPPTTIKPVNAEVAALQ-QQ 287
Query 308 KITLATQQGLIRKNIDVKSWINPLFVNQALEQSNLKTYWKPTQ 350
L + L+ K +D++ I W+PTQ
Sbjct 288 TADLFYENRLVPKKVDIRQRI-----------------WQPTQ 313
>Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (strain
2308)]
Length=319
Score = 61.2 bits (147), Expect = 4e-14
Identities = 52/217 (24%), Positives = 104/217 (48%), Gaps = 19/217 (9%)
Query 81 GPAINEALANNQLDFAFLGDLP---PIIGKANGLDTQLLVPTARGITNYLAVRSDLPIKN 137
GP +AL LDF ++G P GKA +++ + G ++ + + K+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKA-----KIVAINSVGFSDRVIAQEGF--KS 117
Query 138 FAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAKKIDAS--W 195
A+LKGK++G+ GT+ ++ AL G+KL DV+V+ +D + V +A A+K+IDA+ W
Sbjct 118 MADLKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIW 177
Query 196 GPSRFFALRDKHIVNLP--ISSRQLNGAGSTQGVFLGRQSFIRQHPNETQQVVTQVVKGL 253
P +H+ + ++ + F+ R + ++P ++++ + +
Sbjct 178 YP--LIGTIKEHVPGMVELAANSDFFPDKTFPSAFIARNEIVAENPEAVKRMIAVIEEAE 235
Query 254 NW-LSNEQNRVPQVALFFTQSGYPASIYAQELNGVNL 289
++ +N + V A F A++ + NG +L
Sbjct 236 DFRTANPEQSVDITAKFLKVD--KANLETEAKNGKSL 270
Score = 17.7 bits (34), Expect = 3.9
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 18/86 (21%)
Query 22 GHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQELAKKNVKV-EWHFFKGA 80
G S A+ LK +IG P+ T+G D+L L L K +K+ + K
Sbjct 114 GFKSMAD-LKGKKIGVPEGTSG---------DML-----LRLALGKAGMKLDDVQVIKMD 158
Query 81 GPAINEALANNQLDFAFLGDLPPIIG 106
+ A A+ Q+D A G P+IG
Sbjct 159 PSTVVSAFASKQIDAA--GIWYPLIG 182
>Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella
suis biovar 1 (strain 1330)]
Length=319
Score = 61.2 bits (147), Expect = 4e-14
Identities = 52/217 (24%), Positives = 104/217 (48%), Gaps = 19/217 (9%)
Query 81 GPAINEALANNQLDFAFLGDLP---PIIGKANGLDTQLLVPTARGITNYLAVRSDLPIKN 137
GP +AL LDF ++G P GKA +++ + G ++ + + K+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKA-----KIVAINSVGFSDRVIAQEGF--KS 117
Query 138 FAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAKKIDAS--W 195
A+LKGK++G+ GT+ ++ AL G+KL DV+V+ +D + V +A A+K+IDA+ W
Sbjct 118 MADLKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIW 177
Query 196 GPSRFFALRDKHIVNLP--ISSRQLNGAGSTQGVFLGRQSFIRQHPNETQQVVTQVVKGL 253
P +H+ + ++ + F+ R + ++P ++++ + +
Sbjct 178 YP--LIGTIKEHVPGMVELAANSDFFPDKTFPSAFIARNEIVAENPEAVKRMIAVIEEAE 235
Query 254 NW-LSNEQNRVPQVALFFTQSGYPASIYAQELNGVNL 289
++ +N + V A F A++ + NG +L
Sbjct 236 DFRTANPEQSVDITAKFLKVD--KANLETEAKNGKSL 270
Score = 17.7 bits (34), Expect = 3.9
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 18/86 (21%)
Query 22 GHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQELAKKNVKV-EWHFFKGA 80
G S A+ LK +IG P+ T+G D+L L L K +K+ + K
Sbjct 114 GFKSMAD-LKGKKIGVPEGTSG---------DML-----LRLALGKAGMKLDDVQVIKMD 158
Query 81 GPAINEALANNQLDFAFLGDLPPIIG 106
+ A A+ Q+D A G P+IG
Sbjct 159 PSTVVSAFASKQIDAA--GIWYPLIG 182
>Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus
biovar 1 (strain 9-941)]
Length=319
Score = 61.2 bits (147), Expect = 4e-14
Identities = 52/217 (24%), Positives = 104/217 (48%), Gaps = 19/217 (9%)
Query 81 GPAINEALANNQLDFAFLGDLP---PIIGKANGLDTQLLVPTARGITNYLAVRSDLPIKN 137
GP +AL LDF ++G P GKA +++ + G ++ + + K+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKA-----KIVAINSVGFSDRVIAQEGF--KS 117
Query 138 FAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAKKIDAS--W 195
A+LKGK++G+ GT+ ++ AL G+KL DV+V+ +D + V +A A+K+IDA+ W
Sbjct 118 MADLKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIW 177
Query 196 GPSRFFALRDKHIVNLP--ISSRQLNGAGSTQGVFLGRQSFIRQHPNETQQVVTQVVKGL 253
P +H+ + ++ + F+ R + ++P ++++ + +
Sbjct 178 YP--LIGTIKEHVPGMVELAANSDFFPDKTFPSAFIARNEIVAENPEAVKRMIAVIEEAE 235
Query 254 NW-LSNEQNRVPQVALFFTQSGYPASIYAQELNGVNL 289
++ +N + V A F A++ + NG +L
Sbjct 236 DFRTANPEQSVDITAKFLKVD--KANLETEAKNGKSL 270
Score = 17.7 bits (34), Expect = 3.9
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 18/86 (21%)
Query 22 GHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQELAKKNVKV-EWHFFKGA 80
G S A+ LK +IG P+ T+G D+L L L K +K+ + K
Sbjct 114 GFKSMAD-LKGKKIGVPEGTSG---------DML-----LRLALGKAGMKLDDVQVIKMD 158
Query 81 GPAINEALANNQLDFAFLGDLPPIIG 106
+ A A+ Q+D A G P+IG
Sbjct 159 PSTVVSAFASKQIDAA--GIWYPLIG 182
>Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)]
Length=319
Score = 61.2 bits (147), Expect = 4e-14
Identities = 52/217 (24%), Positives = 104/217 (48%), Gaps = 19/217 (9%)
Query 81 GPAINEALANNQLDFAFLGDLP---PIIGKANGLDTQLLVPTARGITNYLAVRSDLPIKN 137
GP +AL LDF ++G P GKA +++ + G ++ + + K+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKA-----KIVAINSVGFSDRVIAQEGF--KS 117
Query 138 FAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAKKIDAS--W 195
A+LKGK++G+ GT+ ++ AL G+KL DV+V+ +D + V +A A+K+IDA+ W
Sbjct 118 MADLKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIW 177
Query 196 GPSRFFALRDKHIVNLP--ISSRQLNGAGSTQGVFLGRQSFIRQHPNETQQVVTQVVKGL 253
P +H+ + ++ + F+ R + ++P ++++ + +
Sbjct 178 YP--LIGTIKEHVPGMVELAANSDFFPDKTFPSAFIARNEIVAENPEAVKRMIAVIEEAE 235
Query 254 NW-LSNEQNRVPQVALFFTQSGYPASIYAQELNGVNL 289
++ +N + V A F A++ + NG +L
Sbjct 236 DFRTANPEQSVDITAKFLKVD--KANLETEAKNGKSL 270
Score = 17.7 bits (34), Expect = 3.9
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 18/86 (21%)
Query 22 GHASYAESLKTIRIGSPDLTAGQKHAGGGVVDVLYNKKWLEQELAKKNVKV-EWHFFKGA 80
G S A+ LK +IG P+ T+G D+L L L K +K+ + K
Sbjct 114 GFKSMAD-LKGKKIGVPEGTSG---------DML-----LRLALGKAGMKLDDVQVIKMD 158
Query 81 GPAINEALANNQLDFAFLGDLPPIIG 106
+ A A+ Q+D A G P+IG
Sbjct 159 PSTVVSAFASKQIDAA--GIWYPLIG 182
>Q47537 Taurine-binding periplasmic protein [Escherichia coli
(strain K12)]
Length=320
Score = 47.8 bits (112), Expect = 1e-09
Identities = 46/172 (27%), Positives = 80/172 (47%), Gaps = 10/172 (6%)
Query 72 VEWHFFKGAGPAINEALANNQLDFAFLGDLPPIIGKANGLDTQL-LVPTARGITNYLAVR 130
V+W F +G +I ALA+ + LG P + + + ++ L+ + G + L V+
Sbjct 53 VDWRKFD-SGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVK 111
Query 131 SDLPIKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAALAAKK 190
I +L GKR+ + + S ++AL G+K V +VNL A+ AA
Sbjct 112 KT--ISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPAIIAAWQRGD 169
Query 191 IDAS--WGPSRFFALRDKHIVNLPISSRQLNGAGS-TQGVFLGRQSFIRQHP 239
ID + W P+ +D ++ S Q+ G+ T V++ R+ F +HP
Sbjct 170 IDGAYVWAPAVNALEKDGKVLT---DSEQVGQWGAPTLDVWVVRKDFAEKHP 218
>C0QY54 Putative ABC transporter periplasmic binding protein BHWA1_00430
[Brachyspira hyodysenteriae (strain ATCC 49526 /
WA1)]
Length=346
Score = 42.7 bits (99), Expect = 5e-08
Identities = 40/142 (28%), Positives = 61/142 (43%), Gaps = 16/142 (11%)
Query 67 KKNVKVEWHFFKGAGPAINEALANNQLDFAFLG------------DLPPIIGKANGLDTQ 114
K K+E +F GP +NEAL + L + IG + G +
Sbjct 61 KYGFKIETVYFPSGGP-MNEALGAGLWEVGTLSAASVYSLANYNAHVVADIGHSEG-GIE 118
Query 115 LLVPTARGITNYLAVRSDLP--IKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLSDV 172
+LV I V D P + A LKGK + + GT L+ + L + + + V
Sbjct 119 VLVNPDSDILTVKGVNKDFPEVYGDAATLKGKTIAVPTGTISHLNVIHWLRAINVDPNTV 178
Query 173 RVVNLDFNAVNAALAAKKIDAS 194
+V+++F AL AKKIDA+
Sbjct 179 NIVHMEFPQAYQALKAKKIDAA 200
Score = 16.5 bits (31), Expect = 9.0
Identities = 8/34 (24%), Positives = 15/34 (44%), Gaps = 0/34 (0%)
Query 158 FVSALNSQGLKLSDVRVVNLDFNAVNAALAAKKI 191
FV+ + +K D + DF A + + K+
Sbjct 296 FVTTEEIKNIKTGDSVRITADFFASQSLITEDKL 329
>P44658 Putative thiamine biosynthesis protein HI_0357 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=314
Score = 38.5 bits (88), Expect = 1e-06
Identities = 38/138 (28%), Positives = 66/138 (48%), Gaps = 4/138 (3%)
Query 67 KKNVKVEWHFFKGAGPAINEALANNQLDFAFLGDLPPIIGK-ANGLDTQLLVPTARGITN 125
K N++VE + A PA+ LA + + P + + A GL + N
Sbjct 52 KNNLEVE--IIEPADPALPPKLAAAEKVDLAVSYQPQLYQQVAEGLPLVRVGSLISNPLN 109
Query 126 YLAVRSDLPIKNFAELKGKRVGLLRGTADELSFVSALNSQGLKLSDVRVVNLDFNAVNAA 185
+ V +K+ A+LKGK+VG ++ + L+S GL DV +VN+++ +++ +
Sbjct 110 SVVVLKKSNLKSLADLKGKKVGYSVSGFEDGLLDTMLHSIGLSNKDVELVNVNW-SLSPS 168
Query 186 LAAKKIDASWGPSRFFAL 203
L ++DA G R F L
Sbjct 169 LLTGQVDAVIGAFRNFEL 186
Score = 17.3 bits (33), Expect = 5.1
Identities = 8/16 (50%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 329 NPLFVNQALEQSNLKT 344
NPL L++SNLK+
Sbjct 106 NPLNSVVVLKKSNLKS 121
Score = 16.9 bits (32), Expect = 6.8
Identities = 7/22 (32%), Positives = 10/22 (45%), Gaps = 0/22 (0%)
Query 300 YYTQQLQQKITLATQQGLIRKN 321
+Y I +A Q+G KN
Sbjct 32 WYVNPDHAAIIVAQQKGFFEKN 53
Lambda K H a alpha
0.320 0.136 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 798840
Database: 77c8c8cadde0e4befcd3b521a8fb527d.SwissProt.fasta
Posted date: May 9, 2024 11:50 AM
Number of letters in database: 2,907
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
