BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 371e98156b80aeb559d707ce31d022fe.SwissProt.fasta
5 sequences; 1,608 total letters
Query= ACIAD1601
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
P40400 Putative aliphatic sulfonates-binding protein [Bacillus su... 69.7 4e-17
Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (stra... 63.2 6e-15
Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella s... 63.2 6e-15
Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus bio... 63.2 6e-15
Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis bi... 63.2 6e-15
>P40400 Putative aliphatic sulfonates-binding protein [Bacillus
subtilis (strain 168)]
Length=332
Score = 69.7 bits (169), Expect = 4e-17
Identities = 77/341 (23%), Positives = 154/341 (45%), Gaps = 24/341 (7%)
Query 34 LVALLLFIFKPSSSASSKTTNQNEDIVKIRIAVPDLSSSERHSSGTPLIDYIYLNQLLEK 93
L+ L+ IF + ++ + ++ + +IRI + S +PL+ E
Sbjct 5 LIVLVAVIFLLAGCGANGASGDHKQLKEIRIGI--------QQSLSPLL-IAKEKGWFED 55
Query 94 EFAKKNIQIEWQFFKGAGPVINEALANKQLDFAFLGDLAAIIGKSNQVDTTLLMATGRHI 153
F K+ I+++W F+ +GP E LA +LDF+ +G+ I G++ +D + + +
Sbjct 56 AFEKEGIKVKWVEFQ-SGPPQFEGLAADKLDFSQVGNSPVIAGQAAGIDFKEIGLSQDGL 114
Query 154 DAYLGVL--PNKGYTSLEQLRGKRIAIFQGTAMQLSFDQFIERYGFTEKDFRIINLDPTA 211
A G+L N G ++ L+GK+IA+ +G++ + +++ G + D II L P
Sbjct 115 KAN-GILVNQNSGIQDVKGLKGKKIAVAKGSSGFDFLYKALDQVGLSANDVTIIQLQPDE 173
Query 212 ANAALAAKQIDASWGLMS-ILALKQQKIVEVPLSTGQRQDGAGTIQSGL-VGRREFIQQH 269
A +A +DA W + L+L+ K L G+ D G + R +F ++H
Sbjct 174 AASAFENGSVDA-WSIWEPYLSLETMKHGAKILVNGESTD---LYSPGFTLVRTKFSEEH 229
Query 270 PELTQTLVNTVLQSAHWVSQPENRDNAIQLVTKNAGLPTELYTLSLQDKALKTVYSPLLD 329
P+ + ++ W Q E+ D A L + L ++ L++ + ++
Sbjct 230 PDEVVRFLKVFNKAVVW--QKEHLDEAADLYSDIKDLDKKVVENVLKN---TEPLNEIIS 284
Query 330 EYYLGHLQQGVQTALNAKLIKRNVDVKQWQNPEFIEQGIQQ 370
+ + Q+ K I + +DVK + FI++ +++
Sbjct 285 DDIVKAQQETADFQFRTKAIDKKIDVKDVVDNTFIKKALEE 325
>Q2YJB6 Putative binding protein BAB2_1146 [Brucella abortus (strain
2308)]
Length=319
Score = 63.2 bits (152), Expect = 6e-15
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 16/207 (8%)
Query 111 GPVINEALANKQLDFAFLGDLAAIIGKSNQVDTTLLMATGRHIDAYLGVLPNKGYTSLEQ 170
GP+ +AL LDF ++G A + S + + + G V+ +G+ S+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKAKIVAINSVGFSDR----VIAQEGFKSMAD 120
Query 171 LRGKRIAIFQGTAMQLSFDQFIERYGFTEKDFRIINLDPTAANAALAAKQIDAS---WGL 227
L+GK+I + +GT+ + + + G D ++I +DP+ +A A+KQIDA+ + L
Sbjct 121 LKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIWYPL 180
Query 228 MSILALKQQKIVEVPLSTGQRQDGAGTIQSGLVGRREFIQQHPELTQTLVNTVLQSAHWV 287
+ + +VE+ ++ D T S + R E + ++PE + ++ + ++ +
Sbjct 181 IGTIKEHVPGMVELAANSDFFPD--KTFPSAFIARNEIVAENPEAVKRMIAVIEEAEDF- 237
Query 288 SQPENRDNAIQLVTK-----NAGLPTE 309
+ N + ++ + K A L TE
Sbjct 238 -RTANPEQSVDITAKFLKVDKANLETE 263
>Q8FUN4 Putative binding protein BRA1186/BS1330_II1177 [Brucella
suis biovar 1 (strain 1330)]
Length=319
Score = 63.2 bits (152), Expect = 6e-15
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 16/207 (8%)
Query 111 GPVINEALANKQLDFAFLGDLAAIIGKSNQVDTTLLMATGRHIDAYLGVLPNKGYTSLEQ 170
GP+ +AL LDF ++G A + S + + + G V+ +G+ S+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKAKIVAINSVGFSDR----VIAQEGFKSMAD 120
Query 171 LRGKRIAIFQGTAMQLSFDQFIERYGFTEKDFRIINLDPTAANAALAAKQIDAS---WGL 227
L+GK+I + +GT+ + + + G D ++I +DP+ +A A+KQIDA+ + L
Sbjct 121 LKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIWYPL 180
Query 228 MSILALKQQKIVEVPLSTGQRQDGAGTIQSGLVGRREFIQQHPELTQTLVNTVLQSAHWV 287
+ + +VE+ ++ D T S + R E + ++PE + ++ + ++ +
Sbjct 181 IGTIKEHVPGMVELAANSDFFPD--KTFPSAFIARNEIVAENPEAVKRMIAVIEEAEDF- 237
Query 288 SQPENRDNAIQLVTK-----NAGLPTE 309
+ N + ++ + K A L TE
Sbjct 238 -RTANPEQSVDITAKFLKVDKANLETE 263
>Q576E1 Putative binding protein BruAb2_1122 [Brucella abortus
biovar 1 (strain 9-941)]
Length=319
Score = 63.2 bits (152), Expect = 6e-15
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 16/207 (8%)
Query 111 GPVINEALANKQLDFAFLGDLAAIIGKSNQVDTTLLMATGRHIDAYLGVLPNKGYTSLEQ 170
GP+ +AL LDF ++G A + S + + + G V+ +G+ S+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKAKIVAINSVGFSDR----VIAQEGFKSMAD 120
Query 171 LRGKRIAIFQGTAMQLSFDQFIERYGFTEKDFRIINLDPTAANAALAAKQIDAS---WGL 227
L+GK+I + +GT+ + + + G D ++I +DP+ +A A+KQIDA+ + L
Sbjct 121 LKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIWYPL 180
Query 228 MSILALKQQKIVEVPLSTGQRQDGAGTIQSGLVGRREFIQQHPELTQTLVNTVLQSAHWV 287
+ + +VE+ ++ D T S + R E + ++PE + ++ + ++ +
Sbjct 181 IGTIKEHVPGMVELAANSDFFPD--KTFPSAFIARNEIVAENPEAVKRMIAVIEEAEDF- 237
Query 288 SQPENRDNAIQLVTK-----NAGLPTE 309
+ N + ++ + K A L TE
Sbjct 238 -RTANPEQSVDITAKFLKVDKANLETE 263
>Q8YDR6 Putative binding protein BMEII0109 [Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)]
Length=319
Score = 63.2 bits (152), Expect = 6e-15
Identities = 48/207 (23%), Positives = 98/207 (47%), Gaps = 16/207 (8%)
Query 111 GPVINEALANKQLDFAFLGDLAAIIGKSNQVDTTLLMATGRHIDAYLGVLPNKGYTSLEQ 170
GP+ +AL LDF ++G A + S + + + G V+ +G+ S+
Sbjct 65 GPIQVQALGAGSLDFGYIGPGALWLPASGKAKIVAINSVGFSDR----VIAQEGFKSMAD 120
Query 171 LRGKRIAIFQGTAMQLSFDQFIERYGFTEKDFRIINLDPTAANAALAAKQIDAS---WGL 227
L+GK+I + +GT+ + + + G D ++I +DP+ +A A+KQIDA+ + L
Sbjct 121 LKGKKIGVPEGTSGDMLLRLALGKAGMKLDDVQVIKMDPSTVVSAFASKQIDAAGIWYPL 180
Query 228 MSILALKQQKIVEVPLSTGQRQDGAGTIQSGLVGRREFIQQHPELTQTLVNTVLQSAHWV 287
+ + +VE+ ++ D T S + R E + ++PE + ++ + ++ +
Sbjct 181 IGTIKEHVPGMVELAANSDFFPD--KTFPSAFIARNEIVAENPEAVKRMIAVIEEAEDF- 237
Query 288 SQPENRDNAIQLVTK-----NAGLPTE 309
+ N + ++ + K A L TE
Sbjct 238 -RTANPEQSVDITAKFLKVDKANLETE 263
Lambda K H a alpha
0.319 0.134 0.383 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 482944
Database: 371e98156b80aeb559d707ce31d022fe.SwissProt.fasta
Posted date: May 9, 2024 10:49 AM
Number of letters in database: 1,608
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
