BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e7029ed1ec6d174ef63841235f3c1e75.SwissProt.fasta
11 sequences; 3,677 total letters
Query= ACIAD1625
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
Q9PFB4 Probable membrane transporter protein XF_0764 [Xylella fas... 78.6 1e-20
O32134 Probable membrane transporter protein YunE [Bacillus subti... 78.6 1e-20
Q87AD2 Probable membrane transporter protein PD_1894 [Xylella fas... 77.0 3e-20
O34578 Probable membrane transporter protein YjnA [Bacillus subti... 68.9 3e-17
Q57883 Probable membrane transporter protein MJ0441 [Methanocaldo... 57.0 4e-13
P54437 Probable membrane transporter protein YrkJ [Bacillus subti... 54.3 3e-12
O05493 Probable membrane transporter protein YdhB [Bacillus subti... 53.9 4e-12
Q93DZ1 Probable membrane transporter protein MamO [Magnetospirill... 54.3 6e-12
Q2W8Q2 Probable membrane transporter protein MamO [Magnetospirill... 53.1 2e-11
P44070 Probable membrane transporter protein HI_0902 [Haemophilus... 51.6 3e-11
P36948 Ribose import permease protein RbsC [Bacillus subtilis (st... 34.3 2e-05
>Q9PFB4 Probable membrane transporter protein XF_0764 [Xylella
fastidiosa (strain 9a5c)]
Length=261
Score = 78.6 bits (192), Expect = 1e-20
Identities = 70/258 (27%), Positives = 118/258 (46%), Gaps = 21/258 (8%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLI 62
+ + G ++G LG+ G GG ILA P L+ G T A +G AV ++A A LI
Sbjct 8 VTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIA-IGTSAVAVSA--NAYANLI 64
Query 63 ----KKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNKLH 118
K V +++A+ AL A G + L+ L + F ++M +V + +
Sbjct 65 AHAWKGHVWWRSAVIFALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRA- 123
Query 119 DVQNPPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNLNM 178
P Q L+ + + ++ G +G G+GGGF+IVPAL T +
Sbjct 124 --------TAPHAEQHQTVLRMCMKTSAVAILTGAASGFFGIGGGFLIVPALIFATRMPT 175
Query 179 QSIVATSLMII---FLVGGVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLISRSIQV 235
+ + +SL+ + L+ ++ A H + + +E +G I LG L S S +
Sbjct 176 INAIGSSLLAVGTFGLITTLNYARHDLVDWTIAMEFIVGGITGGGLGTLLATRFSASKHL 235
Query 236 QTVQRIFALVVFVIAIYL 253
+ R+F L+V +AIY+
Sbjct 236 --LNRVFGLIVIAVAIYV 251
Score = 36.6 bits (83), Expect = 3e-06
Identities = 29/118 (25%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query 138 LQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNL-NMQSIVATSLMIIFLVGGVS 196
+Q+ +V G G + G GLLG GG + P L V + N + TS + + +
Sbjct 3 IQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSANAYAN 62
Query 197 IAIHAVNGFD-YPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAIYL 253
+ HA G + + +G LG G I I Q + +F L++ ++ + +
Sbjct 63 LIAHAWKGHVWWRSAVIFALVGT--LGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLM 118
>O32134 Probable membrane transporter protein YunE [Bacillus subtilis
(strain 168)]
Length=273
Score = 78.6 bits (192), Expect = 1e-20
Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 15/264 (6%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALM-------LSQGWTVSQAAPVGLLAVTLAAML 55
ILV+ G + G + + G GGGI+ VP+LM L Q T A LL + +
Sbjct 5 ILVVLGLIAGTVGSLIGLGGGIVIVPSLMFLSTVTQLFQDVTPQVAIGTSLLVIIFTGLS 64
Query 56 GASEGLIKKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFN 115
+ K V YK+ + + S P + G +++ L ++ ++ F + M++++ +
Sbjct 65 STLAYIKYKTVDYKSGLIFFIGSGPGSMIGAYVSKLFNSNSFSVWFGIFMILISLSLMLK 124
Query 116 KLHDVQNPPCKINPSTGQ------FIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPA 169
N K T Q + ++ Q ++ + + + G L GL G+GGG ++VPA
Sbjct 125 AKARPINKAHKGIIRTFQDDAGEPYTYSYQASVGIA-IAFVVGFLGGLFGIGGGSLMVPA 183
Query 170 LRKVTNLNMQSIVATSLMIIFLVGGVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLI 229
+ + + VATS+ IIFL H ++G L + + G G I
Sbjct 184 MMLLFLFPPKVAVATSMFIIFLSSMTGSVSHMISGHVNWL-YALALVPGAWFGGKLGAAI 242
Query 230 SRSIQVQTVQRIFALVVFVIAIYL 253
+R +Q +T+ I +V+ +I L
Sbjct 243 NRKMQTKTIVMIMRIVLILIGCQL 266
Score = 43.1 bits (100), Expect = 2e-08
Identities = 33/120 (28%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query 142 LVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNLNM-------QSIVATSLMIIFLVG- 193
++L LG++AG + L+G+GGG VIVP+L ++ + Q + TSL++I G
Sbjct 4 VILVVLGLIAGTVGSLIGLGGGIVIVPSLMFLSTVTQLFQDVTPQVAIGTSLLVIIFTGL 63
Query 194 GVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAIYL 253
++A DY + FIG+ G + G +S+ + F + + +I++ L
Sbjct 64 SSTLAYIKYKTVDYKSGLIF-FIGSGP-GSMIGAYVSKLFNSNSFSVWFGIFMILISLSL 121
>Q87AD2 Probable membrane transporter protein PD_1894 [Xylella
fastidiosa (strain Temecula1 / ATCC 700964)]
Length=261
Score = 77.0 bits (188), Expect = 3e-20
Identities = 69/258 (27%), Positives = 117/258 (45%), Gaps = 21/258 (8%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLI 62
+ + G ++G LG+ G GG ILA P L+ G T A +G AV A + A LI
Sbjct 8 VTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIA-IGTSAV--AVSVNAYANLI 64
Query 63 ----KKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNKLH 118
K V +++A+ AL A G + L+ L + F ++M +V + +
Sbjct 65 AHAWKGHVWWRSAVIFALVGTLGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLMLRGRA- 123
Query 119 DVQNPPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNLNM 178
P L+ + + ++ G +G G+GGGF+IVPAL T +
Sbjct 124 --------TAPRAEHHQTVLRMCMKTSSVAILTGAASGFFGIGGGFLIVPALIFATRMPT 175
Query 179 QSIVATSLMII---FLVGGVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLISRSIQV 235
+ + +SL+ + L+ ++ A H + + +E +G I LG L +S S +
Sbjct 176 INAIGSSLLAVGSFGLITTLNYARHDLVNWTIAMEFIVGGITGGGLGTLLATRLSASKHL 235
Query 236 QTVQRIFALVVFVIAIYL 253
+ R+F L+V +AIY+
Sbjct 236 --LNRVFGLIVIAVAIYV 251
Score = 37.4 bits (85), Expect = 1e-06
Identities = 29/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query 138 LQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNL-NMQSIVATSLMIIFLVGGVS 196
+Q+ +V G G + G GLLG GG + P L V + N + TS + + + +
Sbjct 3 IQSLIVTIGSGGLVGFALGLLGGGGSILATPLLLYVVGVTNPHIAIGTSAVAVSVNAYAN 62
Query 197 IAIHAVNGFD-YPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAIYL 253
+ HA G + + +G LG G I I Q + +F L++ ++ + +
Sbjct 63 LIAHAWKGHVWWRSAVIFALVGT--LGAFLGSSIGMLIDGQRLLLLFGLLMAMVGLLM 118
>O34578 Probable membrane transporter protein YjnA [Bacillus subtilis
(strain 168)]
Length=254
Score = 68.9 bits (167), Expect = 3e-17
Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 27/263 (10%)
Query 4 LVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLIK 63
++L G +G L+G+TG GG L P L++ G S A L+ ++ + G + +
Sbjct 5 IILMGLFVGALVGLTGVGGAALLTP-LLIVLGINPSIAVGTDLVYNSITKLFGVASHWRQ 63
Query 64 KMVRYKAAIWIALFSIPFARYGVHLAGLVSAFW----------LTIAFCVVMLIVAYRVF 113
K + +K ++A+ SIP A + + L AF L +V + + R+F
Sbjct 64 KTINFKLVKYLAIGSIPSASLAIGILHLFPAFHQHQEEIIKHALGYVLTLVAISIIVRLF 123
Query 114 FNKLHDVQNPPCKINPSTGQF--IWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALR 171
++ K+ P+ Q + N + +L +G++ G + GL +G G + A+
Sbjct 124 LDR---------KLRPNRWQLMPLENKRALTIL--IGVVFGFIVGLTSIGSGSLFAIAMI 172
Query 172 KVTNLNMQSIVATSLMIIF-LVGGVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLIS 230
+ N+ IV T + F LV I + DY L + +G+ + G+L G +S
Sbjct 173 YLFNMKASQIVGTDIAHAFLLVTAAGILNASFGSVDYMLAANL-LLGS-IPGVLIGSHLS 230
Query 231 RSIQVQTVQRIFALVVFVIAIYL 253
+ +Q I A ++ V + L
Sbjct 231 PRFSPRPLQFIMASIILVSGLKL 253
Score = 37.4 bits (85), Expect = 1e-06
Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGL----LAVTLAAMLGAS 58
+ +L G V G ++G+T G G L A++ SQ + L VT A +L AS
Sbjct 144 LTILIGVVFGFIVGLTSIGSGSLFAIAMIYLFNMKASQIVGTDIAHAFLLVTAAGILNAS 203
Query 59 EGLIKKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLI 107
G V Y A + L SIP G HL+ S L ++L+
Sbjct 204 FG----SVDYMLAANLLLGSIPGVLIGSHLSPRFSPRPLQFIMASIILV 248
>Q57883 Probable membrane transporter protein MJ0441 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440)]
Length=267
Score = 57.0 bits (136), Expect = 4e-13
Identities = 57/245 (23%), Positives = 110/245 (45%), Gaps = 30/245 (12%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWT-----VSQAAPVGLLAVTLAAMLGA 57
+L++ G ++G+L + G GGG L P L + V A L V + +++
Sbjct 15 LLIIVGFIVGILGSLFGIGGGFLVAPILTFIFDYFGIPDGVKFAVGTSLFVVFINSIISI 74
Query 58 SEGLIKKMVRYKAAIWIALFSIPFARY-GVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNK 116
K + +KA+I I + S+ F+ + G + + + L F + ++A ++ K
Sbjct 75 FRHAKIKNINWKASITIGIISLVFSYFSGFLVVNFIDSAILKKLFGI--FLIANAIYMAK 132
Query 117 LHDVQNPPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPAL------ 170
H + KI+ + L+ ++ G ++ G L+GL G+GGG VI+P L
Sbjct 133 SHHID----KISDREDK----LEPFILCG---VITGFLSGLFGIGGGIVIIPILAMAKYP 181
Query 171 -RKVTNLNMQSIVATSL--MIIFLVGGVSIAIHAVNGFDYPLEITMG--FIGACMLGMLC 225
++ +++ I TS+ +I +L I+ + P+ + M I + LG+
Sbjct 182 VKRAVAISVGVIPLTSIGGLISYLTANTEGYIYNIGYVSIPIALIMAIPIIYSSKLGIKI 241
Query 226 GRLIS 230
+ IS
Sbjct 242 NQKIS 246
>P54437 Probable membrane transporter protein YrkJ [Bacillus subtilis
(strain 168)]
Length=261
Score = 54.3 bits (129), Expect = 3e-12
Identities = 48/198 (24%), Positives = 88/198 (44%), Gaps = 21/198 (11%)
Query 4 LVLEGSVIGLLLGMTGAGGGI------LAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGA 57
L + G + + GM G GG + L +P+L+ T + + +G + V A + G
Sbjct 9 LFIIGFIGAFISGMIGIGGAVINYPMLLYIPSLVGVMSLTAHEVSGIGAIQVFFATLGGV 68
Query 58 ----SEGLIKKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVF 113
GLI K + I L S+ G + + +S + + ++ +I +F
Sbjct 69 WAYRKSGLINKTLIIYMGSSILLGSV----LGSYFSHYISEKGINFIYGILAIIAVILMF 124
Query 114 FNKLHDVQNPPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKV 173
K + + + + I+N A L + G ++G+LG GG F++VP + +
Sbjct 125 IPK----KGQKGQEHSEDKEVIFNKWLA---SSLAFIIGGVSGILGAGGAFILVPIMLSI 177
Query 174 TNLNMQSIVATSLMIIFL 191
N+ ++ VA+SL I FL
Sbjct 178 LNIPVRVTVASSLAITFL 195
Score = 32.7 bits (73), Expect = 5e-05
Identities = 28/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (2%)
Query 2 WILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEG- 60
W+ +IG + G+ GAGG + VP +MLS + LA+T + +GA+ G
Sbjct 146 WLASSLAFIIGGVSGILGAGGAFILVP-IMLSILNIPVRVTVASSLAITFLSSIGATVGK 204
Query 61 LIKKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNKL 117
+I V + A+ + + S+ + G + V+ +L ++ A +++ L
Sbjct 205 VITGQVLFVPALVLMITSLIASPIGASVGQKVNTKFLQWVLAQLIGATAIKIWLELL 261
Score = 30.0 bits (66), Expect = 4e-04
Identities = 29/132 (22%), Positives = 53/132 (40%), Gaps = 41/132 (31%)
Query 147 LGMMAGLLTGLLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIFLVGGVSIAIHAVNG-- 204
+G + ++G++G+GG + P L L I LVG +S+ H V+G
Sbjct 12 IGFIGAFISGMIGIGGAVINYPML---------------LYIPSLVGVMSLTAHEVSGIG 56
Query 205 --------------------FDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFAL 244
+ L I MG + +LG + G S I + + I+ +
Sbjct 57 AIQVFFATLGGVWAYRKSGLINKTLIIYMG--SSILLGSVLGSYFSHYISEKGINFIYGI 114
Query 245 --VVFVIAIYLP 254
++ VI +++P
Sbjct 115 LAIIAVILMFIP 126
Score = 17.7 bits (34), Expect = 3.3
Identities = 7/18 (39%), Positives = 11/18 (61%), Gaps = 0/18 (0%)
Query 188 IIFLVGGVSIAIHAVNGF 205
+ F++GGVS + A F
Sbjct 151 LAFIIGGVSGILGAGGAF 168
>O05493 Probable membrane transporter protein YdhB [Bacillus subtilis
(strain 168)]
Length=245
Score = 53.9 bits (128), Expect = 4e-12
Identities = 51/232 (22%), Positives = 99/232 (43%), Gaps = 23/232 (10%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLI 62
+++L ++G++LG GAGG + L L + A L + ++ GA
Sbjct 2 LIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHYR 61
Query 63 KKMVRYKAAIWIALFSIPFARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNKLHDVQN 122
+ ++ K + + F+ + +G L + A L ++ + A + +
Sbjct 62 EGNIQMKIGLIVGGFAAVGSFFGAKLTSFIPADLLHYLTAGMLFLSAILILIRLF--ILK 119
Query 123 PPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNLNMQSIV 182
++N ST L T LG+ AG+L+G G+G I L + NL+++ V
Sbjct 120 EKAQVNQST------LSTYTRAVILGIAAGVLSGTFGIGSAPFIQIGLMIMLNLSIRHSV 173
Query 183 ATSLMIIFLVGGVSIAIHAVNGFDYPLEITMGFIGACML-----GMLCGRLI 229
T++++I + +A+ G+ IT GF+ +L G +CG +
Sbjct 174 GTTMLVI-----IPLAVGGGIGY-----ITEGFVDYVLLVKVLVGTMCGAYV 215
Score = 23.9 bits (50), Expect = 0.034
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 6/109 (6%)
Query 5 VLEGSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLIKK 64
V+ G G+L G G G LM+ ++ + +L + A+ G + +
Sbjct 136 VILGIAAGVLSGTFGIGSAPFIQIGLMIMLNLSIRHSVGTTMLVIIPLAVGGGIGYITEG 195
Query 65 MVRYKAAIWIALFSIPFARYGVHLAGLV------SAFWLTIAFCVVMLI 107
V Y + + + ++ A G L+ SA +LT A ++L+
Sbjct 196 FVDYVLLVKVLVGTMCGAYVGAKFTNLMPKVVLKSAIFLTPAIAGLLLL 244
Score = 18.1 bits (35), Expect = 2.4
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (11%)
Query 149 MMAGLLTGLLGV-------GGGFVIVPALRKVTNLNMQSIVATSLMIIFLVGGVSIAIHA 201
M+ L+ LLG+ GG ++ L + ++ + + + TSL + H
Sbjct 1 MLIILVMFLLGIILGFIGAGGAGFVIALLTLLFHIPIHTALGTSLAGMAFTSLSGAYSHY 60
Query 202 VNGFDYPLEITMGFI--GACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAIYL 253
G +++ +G I G +G G ++ I + + A ++F+ AI +
Sbjct 61 REG---NIQMKIGLIVGGFAAVGSFFGAKLTSFIPADLLHYLTAGMLFLSAILI 111
>Q93DZ1 Probable membrane transporter protein MamO [Magnetospirillum
gryphiswaldense (strain DSM 6361 / JCM 21280 / NBRC 15271
/ MSR-1)]
Length=632
Score = 54.3 bits (129), Expect = 6e-12
Identities = 31/112 (28%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query 147 LGMMAGLLTGLLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIF---LVGGVSIAIH--- 200
LG+ GL +G+LG+ GG + VP R + +++Q+ +A S +++F + G V IH
Sbjct 515 LGLPMGLFSGILGISGGVIEVPLQRYIGRISLQNAIANSSVLVFWASVAGSVVAFIHGGS 574
Query 201 -AVNGFDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAI 251
+ ++ P+ + + I +G + G + R + V+ ++ I+A + IAI
Sbjct 575 TGLIHWEAPVTLALVMIPGAYVGGILGARLMRVLPVRVLKGIYAATMAAIAI 626
Score = 30.0 bits (66), Expect = 5e-04
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (9%)
Query 8 GSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLI----K 63
G +GL G+ G GG++ VP ++ A + V A++ G+ I
Sbjct 516 GLPMGLFSGILGISGGVIEVPLQRYIGRISLQNAIANSSVLVFWASVAGSVVAFIHGGST 575
Query 64 KMVRYKAAIWIALFSIPFARYGVHLAGLVSA 94
++ ++A + +AL IP G ++ G++ A
Sbjct 576 GLIHWEAPVTLALVMIP----GAYVGGILGA 602
Score = 25.4 bits (54), Expect = 0.013
Identities = 26/118 (22%), Positives = 49/118 (42%), Gaps = 12/118 (10%)
Query 136 WNLQTALVLGGLGMMAGLLTGLLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIFLVGGV 195
+++ L LG L + AG+ G++ +GGG + V + M I ++FL V
Sbjct 343 YSIADILGLGMLALAAGVTGGMMTMGGGVLQVAGMMVFFGYGMYLI----RPVVFLTNVV 398
Query 196 SIAIHAVNG-------FDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVV 246
A+ +D + + ++G G I S+ V + +FAL++
Sbjct 399 VYGAAALRNDKAQLVQWDKVKPLIPWGVAGVVIGYFIGNAIGDSV-VGVLLGLFALIM 455
Score = 20.8 bits (42), Expect = 0.38
Identities = 29/133 (22%), Positives = 50/133 (38%), Gaps = 38/133 (29%)
Query 9 SVIGLLLGMTG---AGGGILAV-----------------------PALMLSQGWTVSQAA 42
SV+G+LLG+ AG +L + + L++G T + +
Sbjct 442 SVVGVLLGLFALIMAGKAVLEILQPNAGEDTAEAIAAAEAGDEMDELMALAEGTTRPKTS 501
Query 43 PVGL-LAVTLAAMLGASEGLIKKMVRYKAAIWIALFSIPFARYGVHLA-------GLVSA 94
+ L T +A+LG GL ++ + +P RY ++ V
Sbjct 502 GIALPEGPTRSAVLGLPMGLFSGILGISGGV----IEVPLQRYIGRISLQNAIANSSVLV 557
Query 95 FWLTIAFCVVMLI 107
FW ++A VV I
Sbjct 558 FWASVAGSVVAFI 570
Score = 18.1 bits (35), Expect = 2.7
Identities = 10/43 (23%), Positives = 20/43 (47%), Gaps = 0/43 (0%)
Query 157 LLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIFLVGGVSIAI 199
++GVGGG V + + V T+L + V +++ +
Sbjct 86 VVGVGGGGVNAGPVASGAIVGANGYVITTLHSVANVPDITVQV 128
Score = 17.3 bits (33), Expect = 4.7
Identities = 8/31 (26%), Positives = 13/31 (42%), Gaps = 0/31 (0%)
Query 123 PPCKINPSTGQFIWNLQTALVLGGLGMMAGL 153
PP + G W + V+GG + G+
Sbjct 280 PPAAQTVAMGSSSWWSKAKAVVGGPTAVPGM 310
>Q2W8Q2 Probable membrane transporter protein MamO [Magnetospirillum
magneticum (strain AMB-1 / ATCC 700264)]
Length=637
Score = 53.1 bits (126), Expect = 2e-11
Identities = 29/112 (26%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query 147 LGMMAGLLTGLLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIF---LVGGVSIAIHAVN 203
LG+ GL +G+LG+ GG + VP R V +++Q+ +A S +++F + G V +H +
Sbjct 520 LGLPMGLFSGILGISGGVIEVPLQRYVGRISLQNAIANSSVLVFWASVAGSVVAFLHGSS 579
Query 204 ----GFDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVFVIAI 251
++ P+ + + I +G + G + R + V+ ++ ++A + IA+
Sbjct 580 TGLIHWEAPVTLALVMIPGAYVGGIIGARLMRVLPVRVLKGVYAATMAAIAL 631
Score = 30.8 bits (68), Expect = 3e-04
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 8/91 (9%)
Query 8 GSVIGLLLGMTGAGGGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGA----SEGLIK 63
G +GL G+ G GG++ VP ++ A + V A++ G+ G
Sbjct 521 GLPMGLFSGILGISGGVIEVPLQRYVGRISLQNAIANSSVLVFWASVAGSVVAFLHGSST 580
Query 64 KMVRYKAAIWIALFSIPFARYGVHLAGLVSA 94
++ ++A + +AL IP G ++ G++ A
Sbjct 581 GLIHWEAPVTLALVMIP----GAYVGGIIGA 607
Score = 21.9 bits (45), Expect = 0.17
Identities = 21/103 (20%), Positives = 45/103 (44%), Gaps = 4/103 (4%)
Query 147 LGMMAGLLTGLLGVGGGFVIVPALRKVTNLNM---QSIVATSLMIIFLVGGVSIAIHAVN 203
L + AG+ G++ +GGG + V + M + +V + ++++ + +
Sbjct 359 LALAAGVTGGMMTMGGGVLQVAGMMVFFGYGMYLIRPVVFLTNVVVYGAASLRNDKAQLV 418
Query 204 GFDYPLEITMGFIGACMLGMLCGRLISRSIQVQTVQRIFALVV 246
+D + I +LG G I S+ V + +FAL++
Sbjct 419 QWDKVKPLIPWGIAGVILGYFIGNAIGDSV-VGILLGLFALIM 460
Score = 20.4 bits (41), Expect = 0.51
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query 157 LLGVGGGFVIVPALRKVTNLNMQSIVATSLMIIFLVGGVSIAIHAVNGF-DYPLEITMGF 215
++GVGGG V + + V T+L + + +S+ + G +P ++
Sbjct 86 VVGVGGGGVNAGPVASGAIVGTNGYVITTLHSVSKLPEISVQVATTGGIRRFPAQVVKTI 145
Query 216 IG--ACMLGMLCGR--LISRSIQVQTV---QRIFA 243
G +L M L R VQTV Q++FA
Sbjct 146 PGHDLALLKMQTTEKFLHFRMADVQTVVPGQQVFA 180
Score = 18.9 bits (37), Expect = 1.6
Identities = 17/60 (28%), Positives = 31/60 (52%), Gaps = 3/60 (5%)
Query 39 SQAAPVGLLAVTLAAMLGASEGLIK-KMVRYKAAIWI--ALFSIPFARYGVHLAGLVSAF 95
+++A +GL + +LG S G+I+ + RY I + A+ + + +AG V AF
Sbjct 515 ARSAVLGLPMGLFSGILGISGGVIEVPLQRYVGRISLQNAIANSSVLVFWASVAGSVVAF 574
Score = 18.1 bits (35), Expect = 2.7
Identities = 6/9 (67%), Positives = 9/9 (100%), Gaps = 0/9 (0%)
Query 9 SVIGLLLGM 17
SV+G+LLG+
Sbjct 447 SVVGILLGL 455
>P44070 Probable membrane transporter protein HI_0902 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=264
Score = 51.6 bits (122), Expect = 3e-11
Identities = 66/276 (24%), Positives = 119/276 (43%), Gaps = 50/276 (18%)
Query 3 ILVLEGSVIGLLLGMTGAGGGILAVPALM-------LSQGWTVSQAAPVGLLAVTLAAML 55
+ +L G++ G L G+ G GGG++ VP L+ + + +S A L + A ++
Sbjct 7 LCLLVGALAGFLAGLFGIGGGLVIVPTLVYLLPIVDVPESLLMSTA-----LGTSFATIV 61
Query 56 GASEGLIKKMVRYKAAIWIAL-FSIPFARYGVHLAGL--------VSAFWLTIAFCVVML 106
G ++ + +W A+ P V + GL +SA I C+V+
Sbjct 62 ITGIGSAQRHHKLGNIVWQAVRILAPVIMLSVFICGLFIGRLDREISA---KIFACLVVY 118
Query 107 IVAYRVFFNKLHDVQNPPCKINPSTGQFIWNLQTALVLGGLGMMAGLLTGLLGVGGGFVI 166
+ V K V + P + V+GG+ + G+ + G+GGG I
Sbjct 119 LATKMVLSIKKDQVTTK--SLTPLSS----------VIGGI--LIGMASSAAGIGGGGFI 164
Query 167 VPALRKVTNLNMQSIVATSLMIIFLVGGVSIAIHAVNGFDYPL--EITMGFIG-ACMLGM 223
VP L +N++ + +S L+G + V+G+ PL E ++G+I +LG+
Sbjct 165 VPFL-TARGINIKQAIGSSAFCGMLLGISGMFSFIVSGWGNPLMPEYSLGYIYLPAVLGI 223
Query 224 LC--------GRLISRSIQVQTVQRIFALVVFVIAI 251
G + + V T+++ FAL + V+AI
Sbjct 224 TATSFFTSKLGASATAKLPVSTLKKGFALFLIVVAI 259
Score = 40.0 bits (92), Expect = 2e-07
Identities = 36/118 (31%), Positives = 54/118 (46%), Gaps = 10/118 (8%)
Query 147 LGMMAGLLTGLLGVGGGFVIVPALRKV-------TNLNMQSIVATSLMIIFLVGGVSIAI 199
+G +AG L GL G+GGG VIVP L + +L M + + TS I + G S
Sbjct 11 VGALAGFLAGLFGIGGGLVIVPTLVYLLPIVDVPESLLMSTALGTSFATIVITGIGSAQR 70
Query 200 HAVNGFDYPLEITMGFIGACMLGM-LCGRLISRSIQVQTVQRIFALVVFVIAIYLPFS 256
H G + + ML + +CG I R + + +IFA +V +A + S
Sbjct 71 HHKLG-NIVWQAVRILAPVIMLSVFICGLFIGR-LDREISAKIFACLVVYLATKMVLS 126
>P36948 Ribose import permease protein RbsC [Bacillus subtilis
(strain 168)]
Length=322
Score = 34.3 bits (77), Expect = 2e-05
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 16/95 (17%)
Query 166 IVPALRKVTNLNMQSIVATSLMIIFLVGGVSIAIHA-------------VNGFDYPLEIT 212
I+ LR+V + ++A + + L GG+ +++ A V+G D L I
Sbjct 48 ILNLLRQVA---INGLIAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAII 104
Query 213 MGFIGACMLGMLCGRLISRSIQVQTVQRIFALVVF 247
+G I +LGM+ G LI++ + + + VF
Sbjct 105 LGCIIGAVLGMINGLLITKGKMAPFIATLATMTVF 139
Score = 26.6 bits (57), Expect = 0.005
Identities = 56/257 (22%), Positives = 99/257 (39%), Gaps = 48/257 (19%)
Query 22 GGILAVPALMLSQGWTVSQAAPVGLLAVTLAAMLGASEGLIKKMV--RYKAAIWIALFSI 79
G ILA+ + +++ G VS PV LA+ L ++GA G+I ++ + K A +IA +
Sbjct 79 GAILALSSALVA-GMIVSGVDPV--LAIILGCIIGAVLGMINGLLITKGKMAPFIATLAT 135
Query 80 PF-------------------ARYGVHLAGLVSAFWLTIAFCVVMLIVAYRVFFNKLHDV 120
YG + G ++L I + +++A+ + + LH
Sbjct 136 MTVFRGLTLVYTDGNPITGLGTNYGFQMFG--RGYFLGIPVPAITMVLAFVILWVLLHKT 193
Query 121 QNPPCKINPSTGQFIWNLQTALVLG----GLGMMAGLLTGLLGVGGGFVIVPALRKVTNL 176
T N + AL+ G + +M L GLL G ++ L
Sbjct 194 -----PFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLAGLLSALAGAILTSRLHSAQPT 248
Query 177 NMQSIVATSLMIIFLVGGVSIAIHAVNGFDYPLEITMGFIGACMLGMLCGRLISRSIQVQ 236
+S ++ + L GG S L G I ++G+L ++ + +
Sbjct 249 AGESYELDAIAAVVL-GGTS------------LSGGRGRIVGTLIGVLIIGTLNNGLNLL 295
Query 237 TVQRIFALVVFVIAIYL 253
V + LVV I I +
Sbjct 296 GVSSFYQLVVKGIVILI 312
Score = 24.6 bits (52), Expect = 0.021
Identities = 44/194 (23%), Positives = 77/194 (40%), Gaps = 43/194 (22%)
Query 3 ILVLEGSVIGLLLGM-------TGAGGGILAVPALM-LSQGWTV--SQAAPV-------G 45
+ ++ G +IG +LGM G +A A M + +G T+ + P+ G
Sbjct 101 LAIILGCIIGAVLGMINGLLITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYG 160
Query 46 LLAVTLAAMLGASEGLIKKMVRYKAAIWIALFSIPFARY-----GVHLAGLVSAFWLT-- 98
LG I ++ + +W+ L PF R G A L+S +T
Sbjct 161 FQMFGRGYFLGIPVPAITMVLAF-VILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRV 219
Query 99 ----IAFCVVMLIVAYRVFFNKLHDVQNPPCKINPSTGQ-FIWNLQTALVLGGL------ 147
+ ++ +A + ++LH Q P+ G+ + + A+VLGG
Sbjct 220 KVMIYSLAGLLSALAGAILTSRLHSAQ-------PTAGESYELDAIAAVVLGGTSLSGGR 272
Query 148 GMMAGLLTGLLGVG 161
G + G L G+L +G
Sbjct 273 GRIVGTLIGVLIIG 286
Lambda K H a alpha
0.333 0.146 0.449 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 694440
Database: e7029ed1ec6d174ef63841235f3c1e75.SwissProt.fasta
Posted date: May 20, 2024 4:12 AM
Number of letters in database: 3,677
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
