BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b8b34a06eb5bd2d4ac5c2c10b4e0dec9.SwissProt.fasta
15 sequences; 4,461 total letters
Query= ACIAD1659
Length=316
Score E
Sequences producing significant alignments: (Bits) Value
P0A9F7 Glycine cleavage system transcriptional activator [Escheri... 146 3e-45
P0A9F8 Glycine cleavage system transcriptional activator [Escheri... 146 3e-45
P0A9F6 Glycine cleavage system transcriptional activator [Escheri... 146 3e-45
P45099 Glycine cleavage system transcriptional activator homolog ... 132 5e-40
P46068 HTH-type transcriptional regulator DsdC [Escherichia coli ... 126 2e-37
Q57083 HTH-type transcriptional regulator PerR [Escherichia coli ... 116 6e-34
P14145 HTH-type transcriptional activator AmpR [Rhodobacter capsu... 105 7e-30
P11720 HTH-type transcriptional regulator TrpI [Pseudomonas aerug... 105 8e-30
P55576 Uncharacterized HTH-type transcriptional regulator y4mQ [S... 104 2e-29
P12529 HTH-type transcriptional activator AmpR [Citrobacter freun... 98.2 4e-27
P34818 HTH-type transcriptional regulator TrpI [Pseudomonas syrin... 98.2 4e-27
P52676 Carbapenem-hydrolyzing beta-lactamase transcriptional acti... 97.4 8e-27
P52660 HTH-type transcriptional regulator BlaA [Proteus vulgaris] 96.7 1e-26
P52658 HTH-type transcriptional activator AmpR [Citrobacter koseri] 96.3 2e-26
P45461 HTH-type transcriptional activator AmpR [Yersinia enteroco... 94.7 7e-26
>P0A9F7 Glycine cleavage system transcriptional activator [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=305
Score = 146 bits (369), Expect = 3e-45
Identities = 94/302 (31%), Positives = 157/302 (52%), Gaps = 17/302 (6%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
+ +P + +L F++AA+H S+T AA+EL +TQ+AVS QI+ LEDFL ++LF R + L
Sbjct 3 KRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLL 62
Query 63 TQAGEQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYP 122
T+ G+ Y+ +IK + + +T L + + G L + ++P+FA WL+PRL FN YP
Sbjct 63 TEEGQSYFLDIKEIFSQLTEATRKLQA-RSAKGALTVSLLPSFAIHWLVPRLSSFNSAYP 121
Query 123 EITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRH 182
I + ++ + D AI+ G NWPG +++ L E ++PVCSP L+
Sbjct 122 GIDVRIQAVDRQEDKLADDVDVAIFYGR----GNWPGLRVEKLYAEYLLPVCSPLLLTGE 177
Query 183 FPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSML 242
P LK +PE +++ LL +R W+ + +G + +G +M+
Sbjct 178 KP---LK-------TPEDLAKHTLLHDASR-RDWQTYTRQLGLNHINVQQGPIFSHSAMV 226
Query 243 AVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQNNNI-LIQKFID 301
AA H GVAL ++ + E+ L+ + LV ++Y V + + I F
Sbjct 227 LQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQ 286
Query 302 WL 303
W+
Sbjct 287 WI 288
>P0A9F8 Glycine cleavage system transcriptional activator [Escherichia
coli O157:H7]
Length=305
Score = 146 bits (369), Expect = 3e-45
Identities = 94/302 (31%), Positives = 157/302 (52%), Gaps = 17/302 (6%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
+ +P + +L F++AA+H S+T AA+EL +TQ+AVS QI+ LEDFL ++LF R + L
Sbjct 3 KRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLL 62
Query 63 TQAGEQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYP 122
T+ G+ Y+ +IK + + +T L + + G L + ++P+FA WL+PRL FN YP
Sbjct 63 TEEGQSYFLDIKEIFSQLTEATRKLQA-RSAKGALTVSLLPSFAIHWLVPRLSSFNSAYP 121
Query 123 EITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRH 182
I + ++ + D AI+ G NWPG +++ L E ++PVCSP L+
Sbjct 122 GIDVRIQAVDRQEDKLADDVDVAIFYGR----GNWPGLRVEKLYAEYLLPVCSPLLLTGE 177
Query 183 FPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSML 242
P LK +PE +++ LL +R W+ + +G + +G +M+
Sbjct 178 KP---LK-------TPEDLAKHTLLHDASR-RDWQTYTRQLGLNHINVQQGPIFSHSAMV 226
Query 243 AVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQNNNI-LIQKFID 301
AA H GVAL ++ + E+ L+ + LV ++Y V + + I F
Sbjct 227 LQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQ 286
Query 302 WL 303
W+
Sbjct 287 WI 288
>P0A9F6 Glycine cleavage system transcriptional activator [Escherichia
coli (strain K12)]
Length=305
Score = 146 bits (369), Expect = 3e-45
Identities = 94/302 (31%), Positives = 157/302 (52%), Gaps = 17/302 (6%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
+ +P + +L F++AA+H S+T AA+EL +TQ+AVS QI+ LEDFL ++LF R + L
Sbjct 3 KRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLL 62
Query 63 TQAGEQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYP 122
T+ G+ Y+ +IK + + +T L + + G L + ++P+FA WL+PRL FN YP
Sbjct 63 TEEGQSYFLDIKEIFSQLTEATRKLQA-RSAKGALTVSLLPSFAIHWLVPRLSSFNSAYP 121
Query 123 EITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRH 182
I + ++ + D AI+ G NWPG +++ L E ++PVCSP L+
Sbjct 122 GIDVRIQAVDRQEDKLADDVDVAIFYGR----GNWPGLRVEKLYAEYLLPVCSPLLLTGE 177
Query 183 FPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSML 242
P LK +PE +++ LL +R W+ + +G + +G +M+
Sbjct 178 KP---LK-------TPEDLAKHTLLHDASR-RDWQTYTRQLGLNHINVQQGPIFSHSAMV 226
Query 243 AVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQNNNI-LIQKFID 301
AA H GVAL ++ + E+ L+ + LV ++Y V + + I F
Sbjct 227 LQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQ 286
Query 302 WL 303
W+
Sbjct 287 WI 288
>P45099 Glycine cleavage system transcriptional activator homolog
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /
KW20 / Rd)]
Length=301
Score = 132 bits (333), Expect = 5e-40
Identities = 97/315 (31%), Positives = 157/315 (50%), Gaps = 24/315 (8%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
+ +P + SL FESAA++ S+T AA EL +TQ+AVS QI+ LE FL I+LF R +EL
Sbjct 7 KRLPPLNSLKSFESAARYLSFTKAADELCVTQAAVSHQIKLLEXFLGIDLFKRKNRSLEL 66
Query 63 TQAGEQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYP 122
T+ G+ Y+ +I +L + +T L++ K L + V TF +WL+P L FN++YP
Sbjct 67 TELGKAYFVDINKILRRLNEATERLLTLK-TDPHLNISVPQTFGIQWLVPHLSEFNQLYP 125
Query 123 EITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRH 182
+I + L + + D AIY G + NW ++ L +E ++ + SP L
Sbjct 126 QIEVRLTGVDQDEGLLNKEIDLAIYYG----LGNWQNLQVDRLCEENLLILASPEL---- 177
Query 183 FPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFS-- 240
L +N I PE + + L+ T W + + Q+ LFS
Sbjct 178 -----LAENPII--QPEDLKKHTLIHIHT----CDNWQAMANHLQLDDLNIQQGPLFSHT 226
Query 241 -MLAVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFV-YSEQNNNILIQK 298
M AA H G+ L ++L +E+ N L + L +S+Y V + ++ ++ IQ
Sbjct 227 FMALQAAIHGQGIVLANRLLALQEIENGSLQAVLPTNLPDPKSFYVVNHLDRLDDQKIQA 286
Query 299 FIDWLEQEVKNFQNQ 313
F W+ +K +N+
Sbjct 287 FRQWIINSIKQEENE 301
>P46068 HTH-type transcriptional regulator DsdC [Escherichia coli
(strain K12)]
Length=311
Score = 126 bits (316), Expect = 2e-37
Identities = 95/299 (32%), Positives = 145/299 (48%), Gaps = 17/299 (6%)
Query 14 FESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAGEQYYKNI 73
FE AA+H+S+ AA+ELS++ SAVS +I QLE+ L I+LF R+ VELT G++ Y +
Sbjct 23 FEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGKRVYWAL 82
Query 74 KPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYPEITIHLETSTK 133
K L + LD+ + + L GTL L P+ A WL+P L F YP I++ + T
Sbjct 83 KSSLDTLNQEILDIKNQE-LSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGND 141
Query 134 PFLFSDHIFDAAIYAGTPSQIENWPGAKI--QFLMQEEVVPVCSPTLIKRHFPDITLKQN 191
D AIY ++ P A++ FLM EE++PVCSP +RH N
Sbjct 142 NVNLQRAGIDLAIY------FDDAPSAQLTHHFLMDEEILPVCSPEYAQRH-----ALTN 190
Query 192 QTISLSP-EQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSMLAVAATHHL 250
I+L + + W W P G + + +AA +H+
Sbjct 191 TVINLCHCTLLHDRQAWSNDSGTDEWHSWAQHYAVNLP-TSSGIGFDRSDLAVIAAMNHI 249
Query 251 GVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQNNN-ILIQKFIDWLEQEVK 308
GVA+ + L++K L + EL+ V +Y++ + I+ FI WL ++VK
Sbjct 250 GVAMGRKRLVQKRLASGELVAPFGDMTVKCHQHYYITTLPGRQWPKIEAFIIWLREQVK 308
Score = 18.1 bits (35), Expect = 3.9
Identities = 6/18 (33%), Positives = 12/18 (67%), Gaps = 0/18 (0%)
Query 296 IQKFIDWLEQEVKNFQNQ 313
++ +D L QE+ + +NQ
Sbjct 82 LKSSLDTLNQEILDIKNQ 99
>Q57083 HTH-type transcriptional regulator PerR [Escherichia coli
(strain K12)]
Length=297
Score = 116 bits (291), Expect = 6e-34
Identities = 97/306 (32%), Positives = 147/306 (48%), Gaps = 35/306 (11%)
Query 11 LICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAGEQYY 70
L FE+A + ++ AA EL ++ SA+S I++LE+ LD+ LF R+ + LT+ GE
Sbjct 12 LRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREITLTKEGEILL 71
Query 71 KNIK----PLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYPEITI 126
++I+ L G+ T D L+L P+FA +WLLPRL +F P I +
Sbjct 72 EHIQRGFNELQQGLALVTAD------ESRPLRLHTAPSFAHQWLLPRLGKFIRENPSIDL 125
Query 127 HLETSTKPFLFSDHIFDAAIYAG--TPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRHFP 184
L ST+ F FD I G PS E P L EE+ P+CSP L +R
Sbjct 126 RLSASTEYARFEQDDFDLDIVYGEPRPSPYEKIP------LAVEELTPLCSPQLAER--- 176
Query 185 DITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSMLAV 244
LK+ PE + L L+Q + Y WK WF P G R + M
Sbjct 177 ---LKK-------PEDLYALTLIQCDVQLYQWKGWFEANKMTPPNNY-GLRFDRSFMAIA 225
Query 245 AATHHLGVALIPQMLLEKELLNRELI--VISSLKLVGTRSYYFVYSE-QNNNILIQKFID 301
AA LGV L ++L E+E+ + +L+ +++S + +Y V+ + Q+ + + F
Sbjct 226 AAVDGLGVVLESKLLAEREIASGKLVCPLVNSTSEIHYIGHYLVFPQHQHMHSALDVFKT 285
Query 302 WLEQEV 307
WL E+
Sbjct 286 WLLNEL 291
>P14145 HTH-type transcriptional activator AmpR [Rhodobacter capsulatus]
Length=289
Score = 105 bits (262), Expect = 7e-30
Identities = 93/303 (31%), Positives = 129/303 (43%), Gaps = 34/303 (11%)
Query 8 IQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAGE 67
+ +L FE A + S+T AA EL +TQ+AVS Q+ +LED L LF RT G+ T G
Sbjct 8 LNALRVFEVAMRQGSFTKAAIELRVTQAAVSHQVARLEDLLGTALFLRTSQGLIPTDEGR 67
Query 68 QYYKNIKPLLLGIEHSTLDLMSH--KGLGG-----TLKLGVIPTFATRWLLPRLYRFNEI 120
LL + D MS LGG LK+GV TFA WL+PRL F +
Sbjct 68 --------LLFPVLEHGFDAMSRVLDRLGGRRDIEVLKVGVNTTFAMCWLMPRLEAFRQA 119
Query 121 YPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIK 180
+P+I + + T+ D AI GT W G L + + P+C+P L
Sbjct 120 HPQIDLRISTNNNRVEILREGLDMAIRFGT----GGWTGHDAIPLAEAPMAPLCAPGLAS 175
Query 181 RHFPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFS 240
R L P + Q+ LL ++ R W WF G P + G +
Sbjct 176 R-------------LLHPSDLGQVTLL-RSYRSAEWPGWFEAAGVPCP-PVTGPVFDSSV 220
Query 241 MLAVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQNNNILIQKFI 300
LA AT GVAL+P + E + L + + R Y S++ + F
Sbjct 221 ALAELATSGAGVALLPISMFESYIAQGRLAQPFGVTVSVGRYYLAWPSDRPATSAMSTFS 280
Query 301 DWL 303
WL
Sbjct 281 RWL 283
>P11720 HTH-type transcriptional regulator TrpI [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=295
Score = 105 bits (262), Expect = 8e-30
Identities = 82/271 (30%), Positives = 123/271 (45%), Gaps = 31/271 (11%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
R +PS+ +L FE+AA+ S + AA+EL +T AVSRQ++ LED L + LF + GV+L
Sbjct 3 RDLPSLNALRAFEAAARLHSISLAAEELHVTHGAVSRQVRLLEDDLGVALFGKDGRGVKL 62
Query 63 TQAGEQY-------YKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLY 115
T +G + ++ ++ + + T + LGV + RW +PRL
Sbjct 63 TDSGVRLRDACGDAFERLRGVCAELRRQTAE--------APFVLGVPGSLLARWFIPRLD 114
Query 116 RFNEIYPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQF-LMQEEVVPVC 174
+ N P++ + L TS F DA ++ P WP F L E + PV
Sbjct 115 QLNRALPDLRLQLSTSEGEFDPRRPGLDAMLWFAEPP----WPADMQVFELAPERMGPVV 170
Query 175 SPTLIKRHFPDITLKQNQTISLSP-EQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEG 233
SP L Q ++ +P ++ Q PLL +RP W W G G
Sbjct 171 SP----------RLAQETGLAQAPAARLLQEPLLHTASRPQAWPAWAASQGLAAEALRYG 220
Query 234 QRHELFSMLAVAATHHLGVALIPQMLLEKEL 264
Q E L AA LGVA+ P+ L+ +L
Sbjct 221 QGFEHLYYLLEAAVAGLGVAIAPEPLVRDDL 251
>P55576 Uncharacterized HTH-type transcriptional regulator y4mQ
[Sinorhizobium fredii (strain NBRC 101917 / NGR234)]
Length=298
Score = 104 bits (260), Expect = 2e-29
Identities = 92/309 (30%), Positives = 146/309 (47%), Gaps = 34/309 (11%)
Query 7 SIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAG 66
S+ ++ FE+AA+ S+ AA+EL+++ SAVS I +LE L + LF RT V LT AG
Sbjct 6 SLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAG 65
Query 67 EQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYPEITI 126
+ + + + S+K L+L P+FA + L PRL +F + P I +
Sbjct 66 QTLLNHASNAFEELRRGVEQISSNK--AQLLRLHCAPSFAAQVLSPRLPQFLKENPGIEV 123
Query 127 HLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKRHFPDI 186
+ ST F D +FDA I G P E+ + L +E V+P+C+P L +
Sbjct 124 RVAASTNYARFVDGLFDADIVYGEPLNRED---LIVIPLSEEIVLPLCAPDLAHQ----- 175
Query 187 TLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTC--MGYEYPYAMEGQRHELFSMLAV 244
SP + PL++ + W +WF +G +M R S LAV
Sbjct 176 --------IKSPRDLFHQPLIRSDLKRIQWIDWFEANDLGPPPSPSMSFDR----SFLAV 223
Query 245 -AATHHLGVALIPQMLLEKELLNRELI-----VISSLKLVGTRSYYFVYSEQ-NNNILIQ 297
AA + LG+AL +L +EL + +L+ + + +G +Y Y + + L +
Sbjct 224 DAAVNGLGIALESDVLARRELESGKLVRPLHRICRDNRYIG---HYLAYPKSGSQRRLAR 280
Query 298 KFIDWLEQE 306
F DWL +E
Sbjct 281 AFADWLTRE 289
>P12529 HTH-type transcriptional activator AmpR [Citrobacter freundii]
Length=291
Score = 98.2 bits (243), Expect = 4e-27
Identities = 94/307 (31%), Positives = 134/307 (44%), Gaps = 29/307 (9%)
Query 2 RRMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVE 61
R IP + SL FE+AA+H S+T AA EL++T SA+S+ ++ LE L+ +LF R G+
Sbjct 3 RSYIP-LNSLRAFEAAARHLSFTRAAIELNVTHSAISQHVKSLEQQLNCQLFVRGSRGLM 61
Query 62 LTQAGEQYYKNIKPLL---LGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFN 118
LT GE ++ P+L LD + K LK+GV+ TFA L P L F
Sbjct 62 LTTEGE----SLLPVLNDSFDRMAGMLDRFATKQTQEKLKIGVVGTFAIGCLFPLLSDFK 117
Query 119 EIYPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTL 178
YP I +H+ T + D I G + W Q+L + P+CSPTL
Sbjct 118 RSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGGA----WHDTDAQYLCSALMSPLCSPTL 173
Query 179 IKRHFPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEG-QRHE 237
Q QT P I + PLL+ R W W G P +
Sbjct 174 ---------ASQIQT----PADILKFPLLRSYRRDE-WALWMQAAGEAPPSPTHNVMVFD 219
Query 238 LFSMLAVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFV-YSEQNNNILI 296
+ AA +GVA+ P + LL+ E IV L + SY+ + +
Sbjct 220 SSVTMLEAAQGGMGVAIAPVRMF-THLLSSERIVQPFLTQIDLGSYWITRLQSRPETPAM 278
Query 297 QKFIDWL 303
++F WL
Sbjct 279 REFSRWL 285
>P34818 HTH-type transcriptional regulator TrpI [Pseudomonas syringae
pv. syringae]
Length=298
Score = 98.2 bits (243), Expect = 4e-27
Identities = 81/276 (29%), Positives = 121/276 (44%), Gaps = 29/276 (11%)
Query 3 RMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVEL 62
R +P + +L FE+ A+ S + AA++L +T AVSRQ++ LE+ L I LF + G++L
Sbjct 3 RDLPPLNALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGISLFVKDGRGLKL 62
Query 63 TQAG-------EQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLY 115
T AG + ++ ++ + + S+ D G G+L RWL+PRL
Sbjct 63 TDAGARLRDASAEAFERLRDVCAELTQSSADAPFVLGCSGSL--------LARWLIPRLG 114
Query 116 RFNEIYPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPG-AKIQFLMQEEVVPVC 174
R N P++ +HL DA + P WP ++ L E + PV
Sbjct 115 RLNADLPDLRLHLSAGDGDLDPRRPGLDALLVFAEPP----WPADMQVYELTSERIGPVM 170
Query 175 SPTLIKRHFPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQ 234
SP R L +L E LL T+RP W W G E GQ
Sbjct 171 SP----RFAGYERLSHAPAAALCGE-----ALLHTTSRPQAWPSWAQQHGIEPGALKHGQ 221
Query 235 RHELFSMLAVAATHHLGVALIPQMLLEKELLNRELI 270
E L AA LGVA+ P+ L+ ++L L+
Sbjct 222 GFEHLYYLLEAAVAGLGVAIAPEPLVAEDLRAGRLV 257
>P52676 Carbapenem-hydrolyzing beta-lactamase transcriptional
activator [Enterobacter cloacae]
Length=295
Score = 97.4 bits (241), Expect = 8e-27
Identities = 81/314 (26%), Positives = 142/314 (45%), Gaps = 27/314 (9%)
Query 1 VRRMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGV 60
+R +P + +L FE++A++ ++T A EL ++Q+AVS+Q++ LE L + LF+R G+
Sbjct 1 MRARLP-LNALRAFEASARYLNFTKAGLELHVSQAAVSQQVRTLEQMLGVALFTRVPRGL 59
Query 61 ELTQAGEQYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEI 120
+LT G +I L + S +D + L + V+ TFA WLLPR+ F
Sbjct 60 QLTDEGMHLLPSITE-ALQMMSSAMDKFHEGKIKEVLTIAVVGTFAIGWLLPRITAFLNE 118
Query 121 YPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIK 180
P I I + T + DA+I GT W + L Q +CSP K
Sbjct 119 NPWIDIRILTHNNVVNLAAEGIDASIRFGT----GGWINTENILLFQAPHTVLCSPETSK 174
Query 181 RHFPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFS 240
+ + P + ++ LL ++ R W WF G + P+ + G +
Sbjct 175 KLY-------------IPSDLKKVCLL-RSYRKEEWNNWFKAAGID-PWTITGPIFDSTR 219
Query 241 MLAVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVYSEQ----NNNILI 296
++ A AL+P + +KEL R V ++ T Y++ ++ +N+ +
Sbjct 220 LMIDAVKLGDYAALVPYHMFQKELNERS--VAKPFEIYATLGGYWLTLQKSRVNHNSEAL 277
Query 297 QKFIDWLEQEVKNF 310
F +W+ + + F
Sbjct 278 NVFKEWIIEHSREF 291
>P52660 HTH-type transcriptional regulator BlaA [Proteus vulgaris]
Length=292
Score = 96.7 bits (239), Expect = 1e-26
Identities = 79/302 (26%), Positives = 132/302 (44%), Gaps = 26/302 (9%)
Query 8 IQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAGE 67
+ +L FE++A+H ++T AA EL +TQ AVS+Q++ LE+ L + LF R G+E+T +
Sbjct 7 LNALRAFEASARHLNFTKAALELYVTQGAVSQQVRMLEERLGVILFKRLPRGLEMTDDAQ 66
Query 68 QYYKNIKPLLLGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRFNEIYPEITIH 127
+ + IE + + + TFA WLLPRL F ++YP I ++
Sbjct 67 ILFSVLTTAFSDIER-VFKQFERGEYRDVVSIAAVGTFAVGWLLPRLAEFRQLYPRIELN 125
Query 128 LETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIK--RHFPD 185
L T+ + D AI G WP + L + +CS K +H D
Sbjct 126 LRTNNNVVNLATEGLDFAIRFGEGL----WPLTHNKALFSAPLTVLCSSDTAKPLQHPTD 181
Query 186 ITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSMLAVA 245
+ N+T L ++ R W +WF P + G + ++ +
Sbjct 182 LI---NET-------------LYRSYREDEWLQWFEKANMS-PIKITGSIFDPSRLMIES 224
Query 246 ATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFVY-SEQNNNILIQKFIDWLE 304
A + GVAL P + +E+ N +L+ ++ V Y+ Y + ++ F WL
Sbjct 225 AIYEGGVALAPAKMFSREIENGQLVQPFKIE-VELGKYWLTYLKSKPMTASMEIFQQWLM 283
Query 305 QE 306
E
Sbjct 284 NE 285
>P52658 HTH-type transcriptional activator AmpR [Citrobacter koseri]
Length=285
Score = 96.3 bits (238), Expect = 2e-26
Identities = 72/268 (27%), Positives = 122/268 (46%), Gaps = 30/268 (11%)
Query 8 IQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGVELTQAGE 67
+ +L FE++A+H S+T AA EL +TQ+AVS+Q++ LED L+ LF R G+E+T +
Sbjct 7 LNALRAFEASARHLSFTRAALELCVTQAAVSQQVRILEDRLNRVLFKRLPRGLEMTDEAQ 66
Query 68 QYYKNIKPLLLGIEHSTLDLMSHKGLGG----TLKLGVIPTFATRWLLPRLYRFNEIYPE 123
+ +L +D + + GG L + + TFA WLLPR+ +F + +P
Sbjct 67 ALF-----AVLTDAFGQIDTIFRQFEGGEYREVLTVAAVGTFAVGWLLPRIEQFRQAHPF 121
Query 124 ITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPTLIKR-H 182
+ + L T+ + D AI G WP + L + + +C+P +R
Sbjct 122 VELRLRTNNNVVNLAAEGLDFAIRFGNGL----WPATHNEMLFEAPLTVLCTPETAQRLR 177
Query 183 FPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHELFSML 242
P L++N L ++ R W WF G + G + ++
Sbjct 178 RPADLLQEN---------------LLRSYRVDEWDNWFAAAGVT-AERINGAVFDSSRLM 221
Query 243 AVAATHHLGVALIPQMLLEKELLNRELI 270
H G AL+P ++ +EL +L+
Sbjct 222 VETVIHTGGAALVPAVMFARELAAGQLV 249
>P45461 HTH-type transcriptional activator AmpR [Yersinia enterocolitica]
Length=294
Score = 94.7 bits (234), Expect = 7e-26
Identities = 95/317 (30%), Positives = 140/317 (44%), Gaps = 35/317 (11%)
Query 1 VRRMIPSIQSLICFESAAKHKSYTDAAQELSITQSAVSRQIQQLEDFLDIELFSRTRHGV 60
VR IP + SL FE+AA+ S+T AA EL++T +A+S+Q++ LE L+ LF R G+
Sbjct 2 VRSYIP-LNSLRAFEAAARQLSFTKAAIELNVTHAAISQQVKALEQRLNCRLFIRISRGL 60
Query 61 ELTQAGEQYYKNIKPLL---LGIEHSTLDLMSHKGLGGTLKLGVIPTFATRWLLPRLYRF 117
LT GE N+ P+L TLD S + +++GV+ TFAT +LL RL F
Sbjct 61 VLTTEGE----NLLPILNDSFDRIADTLDRFSTGIIREKVRVGVVGTFATGYLLSRLRDF 116
Query 118 NEIYPEITIHLETSTKPFLFSDHIFDAAIYAGTPSQIENWPGAKIQFLMQEEVVPVCSPT 177
+ P + I L T D AI G + W + F+ + +C+P+
Sbjct 117 QQHSPHVDILLSTHNNRVDVVAEGLDYAIRYGNGALA--W--HESHFMYAPPLAQLCAPS 172
Query 178 LIKRHFPDITLKQNQTISLSPEQISQLPLLQQTTRPYIWKEWFTCMGYEYPYAMEGQRHE 237
+ KR P L Q +L + R W WF G P Q+
Sbjct 173 ISKRFTPPTDL--------------QRFMLLGSYRAMNWSAWFAAAGGSVP--SPSQQIM 216
Query 238 LF----SMLAVAATHHLGVALIPQMLLEKELLNRELIVISSLKLVGTRSYYFV-YSEQNN 292
+F SML AA +G+AL P + LL E I+ V Y+ +
Sbjct 217 MFDSSVSMLE-AAQAEIGIALAPPAMF-MHLLRSERIIQPFSTTVSLGGYWLTRLQSRTE 274
Query 293 NILIQKFIDWLEQEVKN 309
++ F WL E+K+
Sbjct 275 TPAMRDFALWLLSEMKS 291
Lambda K H a alpha
0.323 0.137 0.410 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1026006
Database: b8b34a06eb5bd2d4ac5c2c10b4e0dec9.SwissProt.fasta
Posted date: May 20, 2024 8:47 AM
Number of letters in database: 4,461
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
