BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1b92869f711aac0c590a66775bfd8fdd.SwissProt.fasta
12 sequences; 3,304 total letters
Query= ACIAD1684
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
Q6XL52 HTH-type transcriptional regulator TsaQ1/TsaQ2 [Comamonas ... 152 4e-48
Q52154 Pca regulon regulatory protein [Pseudomonas putida] 89.0 3e-24
P42968 HTH-type transcriptional regulator KipR [Bacillus subtilis... 76.6 5e-20
P16528 Transcriptional repressor IclR [Escherichia coli (strain K... 75.9 1e-19
P76268 HTH-type transcriptional regulator KdgR [Escherichia coli ... 75.5 2e-19
P77569 DNA-binding transcriptional activator MhpR [Escherichia co... 73.9 7e-19
P17430 Acetate operon repressor [Salmonella typhimurium (strain L... 73.6 9e-19
P37728 HTH-type transcriptional regulator KdgR [Dickeya chrysanth... 68.2 1e-16
P44996 Uncharacterized HTH-type transcriptional regulator HI_1032... 64.7 1e-15
Q43992 p-hydroxybenzoate hydroxylase transcriptional activator [A... 64.3 2e-15
P37671 DNA-binding transcriptional repressor YiaJ [Escherichia co... 64.3 2e-15
P0ACN4 HTH-type transcriptional repressor AllR [Escherichia coli ... 60.5 3e-14
>Q6XL52 HTH-type transcriptional regulator TsaQ1/TsaQ2 [Comamonas
testosteroni]
Length=278
Score = 152 bits (383), Expect = 4e-48
Identities = 84/257 (33%), Positives = 147/257 (57%), Gaps = 4/257 (2%)
Query 27 DMQDEDDRQFITALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYI 86
D E + +LA+GLE+L CFS + LGNQ+L ++TGLPK T++RLT TL +LGY+
Sbjct 9 DQLQESGTGLVHSLAKGLEILSCFSEGEL-LGNQQLVELTGLPKATVSRLTSTLVKLGYL 67
Query 87 RQVPNSTKFQLSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYL 146
+ P S K + VL G S+ + ++ IA+P+M+ L+ G V M TRDRL+++ L
Sbjct 68 QVDPRSRKLAMGARVLGLGVSVQRKLGLQRIARPHMEALSQRFGLTVTMGTRDRLSVVLL 127
Query 147 DVVQ--GKGNVTMRRQVGTYLPIHLSSMGRACLAAMPEDERDFLLNAIRHKHKEDWIKIN 204
+V + + + GT++P+ +++G A L P +R+ ++ +R + + W++
Sbjct 128 EVCRPPSLAQLVVNFDAGTHMPLSQTALGLASLVNSPVKDREQVIEGLRKQLGDQWVEAR 187
Query 205 RDLDKAFKDYQDFGYCFSIGDWHKDVNSVAVPLL-HEQHGLLVFNCGGPSFIMKREKLEE 263
+++A ++++ +GY S +DV+ VAV ++ + VF+ GPS M +
Sbjct 188 NRIERAHQEHERYGYIVSQRSLGRDVSGVAVGMVPMGSNTPYVFHMAGPSNQMPLSLMRS 247
Query 264 DIAPRLLHMVNNIKTEI 280
D+ P L MV +I+ E+
Sbjct 248 DMGPALKQMVQDIQAEM 264
>Q52154 Pca regulon regulatory protein [Pseudomonas putida]
Length=291
Score = 89.0 bits (219), Expect = 3e-24
Identities = 67/242 (28%), Positives = 118/242 (49%), Gaps = 7/242 (3%)
Query 33 DRQFITALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNS 92
D F+T+LARGL +++ F ++ HL ++S T +P+ + R HTL +LGY +
Sbjct 41 DPDFMTSLARGLAVIQAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLIKLGY--ATSDG 98
Query 93 TKFQLSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYL-DVVQG 151
+ L VL G++ LS+ + AQPY+ ++D A M+T + +++Y+
Sbjct 99 RTYSLLPKVLTLGHAYLSSTPLAISAQPYLDRISDQLHEAANMATLEGDDILYIARSATV 158
Query 152 KGNVTMRRQVGTYLPIHLSSMGRACLAAMPEDE-RDFLLNAIRHKHKEDWIKINRDLDKA 210
+ +++ VG LP + +SMGR LAAM + R++L A + L
Sbjct 159 ERLISVDLSVGGRLPAYCTSMGRILLAAMDDTSLREYLGRADLKARTSRTLHDPESLFAC 218
Query 211 FKDYQDFGYCFSIGDWHKDVNSVAVPLLHEQHG--LLVFNCGGPSFIMKREKLEEDIAPR 268
+ + G+C + + + S+AVP +++ G L N + R +LE+ P
Sbjct 219 IQQVRAQGWCVVDQELEQGLRSIAVP-IYDASGQVLAALNVSTHVGRVTRSELEQRFLPI 277
Query 269 LL 270
LL
Sbjct 278 LL 279
>P42968 HTH-type transcriptional regulator KipR [Bacillus subtilis
(strain 168)]
Length=250
Score = 76.6 bits (187), Expect = 5e-20
Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 15/247 (6%)
Query 40 LARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLSV 99
+ + + LL F K P L EL +TG+PK ++ R+ +L +G++ + S + L +
Sbjct 8 VVKSMALLNLFLHK-PSLTLSELVSLTGMPKTSVHRMVSSLEEMGFLSR-DASGAYSLGL 65
Query 100 GVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYLDVVQGKGNVTMRR 159
L FG + + IR IA+P M+EL AV + RD IY++ ++G V +
Sbjct 66 VFLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQLIMRDGNEAIYVEKIEGTQTVRLYT 125
Query 160 QVGTYLPIHLSSMGRACLAAMPEDE-----RDFLLNAIRHKHKEDWIKINRDLDKAFKDY 214
+G P++ + R+ L+ +P +E + L +I D K+ +++D + ++
Sbjct 126 AIGRRSPLYAGACARSILSFLPREEIEAYIKQTELISIGSGTITDPEKLLQEIDASVQN- 184
Query 215 QDFGYCFSIGDWHKDVNSVAVPLLHEQHGLLVFNCGGPSFIMKREKLEEDIAPRLLHMVN 274
GY S + ++ P+ + + + G S + ED P L V
Sbjct 185 ---GYTVSYSELENYTAAIGAPIFNHERQV----AAGISIAGFEARFTEDRLPYLTEKVK 237
Query 275 NIKTEIS 281
+ +IS
Sbjct 238 DAALQIS 244
>P16528 Transcriptional repressor IclR [Escherichia coli (strain
K12)]
Length=274
Score = 75.9 bits (185), Expect = 1e-19
Identities = 47/156 (30%), Positives = 79/156 (51%), Gaps = 2/156 (1%)
Query 37 ITALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQ 96
+ +L RGL+LL + + EL+Q GLP T RL T+ + G++RQV +
Sbjct 24 VQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWA 83
Query 97 LSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLN--MIYLDVVQGKGN 154
+ G S L + ++ +I P ++ L + +G V M+ D+ + I +D VQ
Sbjct 84 IGAHAFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCTHL 143
Query 155 VTMRRQVGTYLPIHLSSMGRACLAAMPEDERDFLLN 190
+ M +G LP+H S G+A LA + E++ LL+
Sbjct 144 MRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLH 179
>P76268 HTH-type transcriptional regulator KdgR [Escherichia coli
(strain K12)]
Length=263
Score = 75.5 bits (184), Expect = 2e-19
Identities = 53/222 (24%), Positives = 104/222 (47%), Gaps = 6/222 (3%)
Query 53 KQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLSVGVLAFGYSMLSNV 112
++ +G ELSQ + K T+ R T+ LGY+ Q S K+ L++ + G L NV
Sbjct 28 EEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNV 87
Query 113 SIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYLDVVQGKGNVTMRRQVGTYLPIHLSSM 172
+ A M+EL+ + + D +++Y+ + N+ M ++G P++ +++
Sbjct 88 DLIRSADIQMRELSRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAI 147
Query 173 GRACLAAMPEDERDFLLNAIRHKHK-EDWIKINRDLDKAFKDYQDFGYCFSIGDWHKDVN 231
G+ LA DE +L + +K E I L ++ GY + + +
Sbjct 148 GKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLR 207
Query 232 SVAVPLLHEQHGLLV--FNCGGPSFIMKREKLEEDIAPRLLH 271
+AVP+ ++ G+++ + P+ E+L+E +A +LH
Sbjct 208 CIAVPVF-DRFGVVIAGLSISFPTLRFSEERLQEYVA--MLH 246
>P77569 DNA-binding transcriptional activator MhpR [Escherichia
coli (strain K12)]
Length=277
Score = 73.9 bits (180), Expect = 7e-19
Identities = 65/259 (25%), Positives = 114/259 (44%), Gaps = 11/259 (4%)
Query 28 MQDEDDRQFITA--LARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGY 85
MQ+ + ++ T L RGL LL + L++++GL + T+ RL TL GY
Sbjct 1 MQNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLLAELSGLHRTTVRRLLETLQEEGY 60
Query 86 IRQVPNSTKFQLSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLNMIY 145
+R+ P+ F+L++ V I ++A P + +L +ST D M+
Sbjct 61 VRRSPSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLREVVWPTDVSTLDVDAMVV 120
Query 146 LDVVQGKGNVTMRR-QVGTYLPIHLSSMGRACLAAMPEDERDFLLNAIRHKHKEDW---- 200
+ ++ R VG LP+ ++ G LA PE +R L+ + + +D+
Sbjct 121 RETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPEQDRKELIEMLASRPGDDYQLAR 180
Query 201 --IKINRDLDKAFKDYQDFGYCFSIGDWHKDVNSVAVPLLHEQHGLLVFNCGGPSFIMKR 258
+K+ L +A K + +G + D + + S+AVPL EQ + N + M
Sbjct 181 EPLKLEAILARARK--EGYGQNYRGWDQEEKIASIAVPLRSEQRVIGCLNLVYMASAMTI 238
Query 259 EKLEEDIAPRLLHMVNNIK 277
E+ E P L + I+
Sbjct 239 EQAAEKHLPALQRVAKQIE 257
>P17430 Acetate operon repressor [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=274
Score = 73.6 bits (179), Expect = 9e-19
Identities = 45/156 (29%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query 37 ITALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQ 96
+ +L RGL+LL + + EL+Q GLP T RL T+ + G++RQV +
Sbjct 24 VQSLTRGLKLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWA 83
Query 97 LSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLN--MIYLDVVQGKGN 154
+ G S L + ++ +I P +++L + +G V ++ D+ + I +D VQ
Sbjct 84 VGAHAFIVGSSFLQSRNLLAIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQL 143
Query 155 VTMRRQVGTYLPIHLSSMGRACLAAMPEDERDFLLN 190
+ M +G LP+H S G+A L+ + E++ LL+
Sbjct 144 MRMSAPIGGKLPMHASGAGKAFLSQLSEEQVTSLLH 179
>P37728 HTH-type transcriptional regulator KdgR [Dickeya chrysanthemi]
Length=305
Score = 68.2 bits (165), Expect = 1e-16
Identities = 37/143 (26%), Positives = 70/143 (49%), Gaps = 0/143 (0%)
Query 53 KQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLSVGVLAFGYSMLSNV 112
++ +G ELSQ + K T+ R T+ LGY+ Q S K+ L++ + G L NV
Sbjct 70 EEREIGITELSQRVMMSKSTVYRFLQTMKSLGYVAQEGESEKYSLTLKLFELGAKALQNV 129
Query 113 SIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYLDVVQGKGNVTMRRQVGTYLPIHLSSM 172
+ A M+EL+ + + D +++Y+ + N+ M ++G P+H +++
Sbjct 130 DLIRSADIQMRELSALTRETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLHSTAI 189
Query 173 GRACLAAMPEDERDFLLNAIRHK 195
G+ LA +E +L+ + K
Sbjct 190 GKVLLAWRDREEVKEILSQVEFK 212
>P44996 Uncharacterized HTH-type transcriptional regulator HI_1032
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=268
Score = 64.7 bits (156), Expect = 1e-15
Identities = 44/142 (31%), Positives = 72/142 (51%), Gaps = 3/142 (2%)
Query 39 ALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLS 98
AL RGL LL S +L+++ L K T RL L GY++ + ++L+
Sbjct 17 ALIRGLRLLDILSNYPNGCPLAKLAELANLNKSTAHRLLQGLQNEGYVKPANAAGSYRLT 76
Query 99 VGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTR--DRLNMIYLDVVQGKGNVT 156
+ L+ G +LS+++I +A PY+++L G + S R D MIY + G +
Sbjct 77 IKCLSIGQKVLSSMNIIHVASPYLEQLNLKLGETINFSKREDDHAIMIY-KLEPTNGMLK 135
Query 157 MRRQVGTYLPIHLSSMGRACLA 178
R +G YL ++ S+MG+ LA
Sbjct 136 TRAYIGQYLKLYCSAMGKIFLA 157
>Q43992 p-hydroxybenzoate hydroxylase transcriptional activator
[Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=271
Score = 64.3 bits (155), Expect = 2e-15
Identities = 60/263 (23%), Positives = 111/263 (42%), Gaps = 14/263 (5%)
Query 23 HPIEDMQDEDDRQFITALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSR 82
H E+++ ED +I LA+GL LL F + L ++++ TG+ + R TL
Sbjct 12 HSSEEIRTED---YIAGLAKGLALLEAFGIDRQRLNVTQVAERTGISRTAARRYLKTLKF 68
Query 83 LGYIRQVPNSTKFQLSVGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLN 142
LGY+ + F L+ VL F S LS+ + +AQ ++ L ++ D
Sbjct 69 LGYLD--TDEHYFWLTHRVLRFSSSYLSSAHLPKVAQSFLNLLCAQTSLTFSIVVLDEHE 126
Query 143 MI-----YLDVVQGKGNVTMRRQVGTYLPIHLSSMGRACLAAMPEDERDFLLNAIRHKHK 197
++ YL +G LP H +S G+ L+ + + + + K
Sbjct 127 VVPVARSYLPQQDNLRVSPYGMHLGNRLPAHATSTGKVLLSVLDREVQIEWIEKYGLKRL 186
Query 198 EDW-IKINRDLDKAFKDYQDFGYCFSIGDWHKDVNSVAVPLLHEQHGLLV--FNCGGPSF 254
+ I + + YC S + + ++AVP+L+ Q GL + NC +
Sbjct 187 TPYTITDEHTFLETLDAVRQSDYCLSTEEHELGLIAIAVPVLNAQ-GLTIAALNCMSQTN 245
Query 255 IMKREKLEEDIAPRLLHMVNNIK 277
++ + L + + P L + N ++
Sbjct 246 RVQPQYLIDQVLPLLRNTANELR 268
>P37671 DNA-binding transcriptional repressor YiaJ [Escherichia
coli (strain K12)]
Length=282
Score = 64.3 bits (155), Expect = 2e-15
Identities = 42/142 (30%), Positives = 72/142 (51%), Gaps = 3/142 (2%)
Query 39 ALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLS 98
+L RGL L+ S LS++ GL K T+ RL L GY+ P + ++L+
Sbjct 25 SLFRGLMLIEILSNYPNGCPLAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLT 84
Query 99 VGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTR--DRLNMIYLDVVQGKGNVT 156
+A G LS+++I IA P+++ L G + S+R D +IY + G +
Sbjct 85 TKFIAVGQKALSSLNIIHIAAPHLEALNIATGETINFSSREDDHAILIY-KLEPTTGMLR 143
Query 157 MRRQVGTYLPIHLSSMGRACLA 178
R +G ++P++ S+MG+ +A
Sbjct 144 TRAYIGQHMPLYCSAMGKIYMA 165
Score = 17.7 bits (34), Expect = 3.3
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 0/21 (0%)
Query 68 LPKPTITRLTHTLSRLGYIRQ 88
L + TIT L L +IR+
Sbjct 186 LTRNTITELPAMFDELAHIRE 206
>P0ACN4 HTH-type transcriptional repressor AllR [Escherichia coli
(strain K12)]
Length=271
Score = 60.5 bits (145), Expect = 3e-14
Identities = 38/146 (26%), Positives = 68/146 (47%), Gaps = 0/146 (0%)
Query 39 ALARGLELLRCFSAKQPHLGNQELSQMTGLPKPTITRLTHTLSRLGYIRQVPNSTKFQLS 98
AL RG+ +L+ ++S LP T RL L ++ Q + +
Sbjct 23 ALERGIAILQYLEKSGGSSSVSDISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIG 82
Query 99 VGVLAFGYSMLSNVSIRSIAQPYMKELADYAGAAVAMSTRDRLNMIYLDVVQGKGNVTMR 158
+GV G + + N + S+A P+M+ L +G V ++ R+ + + ++ K V M
Sbjct 83 LGVFNVGAAYIHNRDVLSVAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMC 142
Query 159 RQVGTYLPIHLSSMGRACLAAMPEDE 184
+G+ LP+H S G+A L + E+E
Sbjct 143 APLGSRLPLHASGAGKALLYPLAEEE 168
Score = 17.3 bits (33), Expect = 4.3
Identities = 8/28 (29%), Positives = 13/28 (46%), Gaps = 0/28 (0%)
Query 58 GNQELSQMTGLPKPTITRLTHTLSRLGY 85
G Q+ + T + PT+ + LGY
Sbjct 177 GLQQFTPTTLVDMPTLLKDLEQARELGY 204
Lambda K H a alpha
0.323 0.138 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 672000
Database: 1b92869f711aac0c590a66775bfd8fdd.SwissProt.fasta
Posted date: May 30, 2024 3:54 PM
Number of letters in database: 3,304
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
