Comparative Genomics

ACIAD1714 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: f1c6ee470040666325d8a5b238920202.SwissProt.fasta
           2 sequences; 1,350 total letters



Query= ACIAD1714

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q43922 3-dehydroshikimate dehydratase [Acinetobacter baylyi (stra...  979     0.0  
P0DJ97 Putative Gly-rich membrane protein Bcell_0380 [Evansella c...  38.5    1e-06


>Q43922 3-dehydroshikimate dehydratase [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=486

 Score = 979 bits (2531),  Expect = 0.0
 Identities = 486/486 (100%), Positives = 486/486 (100%), Gaps = 0/486 (0%)

Query  1    MKLTSLRVSLLALGLVTSGFAAAETYTVDRYQDDSEKGSLRWAIEQSNANSAQENQILIQ  60
            MKLTSLRVSLLALGLVTSGFAAAETYTVDRYQDDSEKGSLRWAIEQSNANSAQENQILIQ
Sbjct  1    MKLTSLRVSLLALGLVTSGFAAAETYTVDRYQDDSEKGSLRWAIEQSNANSAQENQILIQ  60

Query  61   AVGKAPYVIKVDKPLPPIKSSVKIIGTEWDKTGEFIAIDGSNYIKGEGEKACPGANPGQY  120
            AVGKAPYVIKVDKPLPPIKSSVKIIGTEWDKTGEFIAIDGSNYIKGEGEKACPGANPGQY
Sbjct  61   AVGKAPYVIKVDKPLPPIKSSVKIIGTEWDKTGEFIAIDGSNYIKGEGEKACPGANPGQY  120

Query  121  GTNVRTMTLPGLVLQDVNGVTLKGLDVHRFCIGVLVNRSSNNLIQHNRISNNYGGAGVMI  180
            GTNVRTMTLPGLVLQDVNGVTLKGLDVHRFCIGVLVNRSSNNLIQHNRISNNYGGAGVMI
Sbjct  121  GTNVRTMTLPGLVLQDVNGVTLKGLDVHRFCIGVLVNRSSNNLIQHNRISNNYGGAGVMI  180

Query  181  TGDDGKGNPTSTTTNNNKVLDNVFIDNGDGLELTRGAAFNLIANNLFTSTKANPEPSQGI  240
            TGDDGKGNPTSTTTNNNKVLDNVFIDNGDGLELTRGAAFNLIANNLFTSTKANPEPSQGI
Sbjct  181  TGDDGKGNPTSTTTNNNKVLDNVFIDNGDGLELTRGAAFNLIANNLFTSTKANPEPSQGI  240

Query  241  EILWGNDNAVVGNKFENYSDGLQINWGKRNYIAYNELTNNSLGFNLTGDGNIFDSNKVHG  300
            EILWGNDNAVVGNKFENYSDGLQINWGKRNYIAYNELTNNSLGFNLTGDGNIFDSNKVHG
Sbjct  241  EILWGNDNAVVGNKFENYSDGLQINWGKRNYIAYNELTNNSLGFNLTGDGNIFDSNKVHG  300

Query  301  NRIGIAIRSEKDANARITLTKNQIWDNGKDIKRCEAGGSCVPNQRLGAIVFGVPALEHEG  360
            NRIGIAIRSEKDANARITLTKNQIWDNGKDIKRCEAGGSCVPNQRLGAIVFGVPALEHEG
Sbjct  301  NRIGIAIRSEKDANARITLTKNQIWDNGKDIKRCEAGGSCVPNQRLGAIVFGVPALEHEG  360

Query  361  FVGSRGGGVVIEPAKLQKTCTQPNQQNCNAIPNQGIQAPKLTVSKKQLTVEVKGTPNQRY  420
            FVGSRGGGVVIEPAKLQKTCTQPNQQNCNAIPNQGIQAPKLTVSKKQLTVEVKGTPNQRY
Sbjct  361  FVGSRGGGVVIEPAKLQKTCTQPNQQNCNAIPNQGIQAPKLTVSKKQLTVEVKGTPNQRY  420

Query  421  NVEFFGNRNASSSEAEQYLGSIVVVTDHQGLAKANWAPKVSMPSVTANVTDHLGATSELS  480
            NVEFFGNRNASSSEAEQYLGSIVVVTDHQGLAKANWAPKVSMPSVTANVTDHLGATSELS
Sbjct  421  NVEFFGNRNASSSEAEQYLGSIVVVTDHQGLAKANWAPKVSMPSVTANVTDHLGATSELS  480

Query  481  SAVKMR  486
            SAVKMR
Sbjct  481  SAVKMR  486


>P0DJ97 Putative Gly-rich membrane protein Bcell_0380 [Evansella 
cellulosilytica (strain ATCC 21833 / DSM 2522 / FERM P-1141 
/ JCM 9156 / N-4)]
Length=864

 Score = 38.5 bits (88),  Expect = 1e-06
 Identities = 45/181 (25%), Positives = 78/181 (43%), Gaps = 26/181 (14%)

Query  153  GVLVNRSSNN------LIQHNRISNNYGGAGVMITGDDGKGNPTSTTTNNNKVLDNVFID  206
            G  +NR+  N      +I  N +  N    G  IT +       + T NN  V+DNV ++
Sbjct  109  GFFINRTDGNYIGLFGVIGENGLVRNLSLTGDYITVEGAPALVGALTGNNYGVIDNVSVE  168

Query  207  NGDGLELTRGAAF--NLIANN--LFTSTKANPEPSQGIEILWGNDNAVVGNKFENYSD--  260
             GDG+ L+  +A+   L+  N     ++  N + + G E+       +VG    N +   
Sbjct  169  IGDGITLSPQSAYVGGLVGTNHGEIWNSNVNSDVNGGNEV-----GGLVGRNASNNTTRI  223

Query  261  GLQINWGKRNYIAYNELTNNSLGFNLTG-------DGNIFDSNKVHGNRIGIAIRSEKDA  313
            G+  N      ++  ++    +G N +G        GN+ D  +  G  IG ++R E DA
Sbjct  224  GIIHNSHATGNVSGQDMVGGLVG-NASGKIRYSYATGNV-DGLESVGGLIGTSVRIEVDA  281

Query  314  N  314
            +
Sbjct  282  S  282


 Score = 21.2 bits (43),  Expect = 0.23
 Identities = 11/41 (27%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query  152  IGVLVNRSSNNLIQHNRISNNYGGAGVMITGDDGKGNPTST  192
            +G L+ R +        + N++         D GKG P ST
Sbjct  357  VGGLIGRQAGGF-SSGTVENSFYDEDTTGQSDTGKGTPMST  396


 Score = 20.4 bits (41),  Expect = 0.40
 Identities = 32/154 (21%), Positives = 61/154 (40%), Gaps = 22/154 (14%)

Query  92   TGEFIAIDGSNYIKGEGEKACPGANPGQYGTNVRTMTLPGLVLQDVNGVTLKGLDVHRFC  151
            TG++I ++G+  + G    A  G N G          +  + ++  +G+TL     +   
Sbjct  138  TGDYITVEGAPALVG----ALTGNNYG---------VIDNVSVEIGDGITLSPQSAY---  181

Query  152  IGVLVNRSSNNLIQHNRISNNYGGAGVMITGDDGKGNPTSTTTNNNKVLDNVFIDNGDGL  211
            +G LV  +   +   N  S+  GG  V   G     N ++ TT    + ++    N  G 
Sbjct  182  VGGLVGTNHGEIWNSNVNSDVNGGNEV---GGLVGRNASNNTTRIGIIHNSHATGNVSGQ  238

Query  212  ELTRGAAFNLIANNLFTSTKANPEPSQGIEILWG  245
            ++  G   N      ++    N +   G+E + G
Sbjct  239  DMVGGLVGNASGKIRYSYATGNVD---GLESVGG  269


 Score = 20.4 bits (41),  Expect = 0.40
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query  41   RWAIEQSNANSAQENQILIQAVGKAPYVIKVDKPLPPIKSSVKIIG-------TE-WDKT  92
            +W I +   +        +  V +A Y   + +P+PP K      G       TE WD  
Sbjct  657  KWEINEYTVSFESNGGSQVSEV-EAEYGSSITEPVPPEKEGHSFKGWYQDEFLTEAWDFK  715

Query  93   GEFIAIDGSNYIKGE  107
             + ++ D + Y K E
Sbjct  716  TDTVSGDMTLYAKWE  730


 Score = 19.6 bits (39),  Expect = 0.69
 Identities = 22/111 (20%), Positives = 43/111 (39%), Gaps = 3/111 (3%)

Query  276  ELTNNSLGFNLTGDGNIFDSNKVHGNRIGIAIRSEKDANARITLTKNQIWDNGKDIKRCE  335
            E+   ++ F   G   + +    +G+ I   +  EK+ ++     +++      D K   
Sbjct  659  EINEYTVSFESNGGSQVSEVEAEYGSSITEPVPPEKEGHSFKGWYQDEFLTEAWDFKTDT  718

Query  336  AGGSCVPNQRLGAIVFGVPALEHEGFVGSRGGGVVIEPAKLQKTCTQPNQQ  386
              G      +    V+ V + E  G  GS+   V  E A L +  T P ++
Sbjct  719  VSGDMTLYAKWEINVYSV-SFESNG--GSQVSEVDTEFASLIEEPTPPEKE  766


 Score = 18.5 bits (36),  Expect = 1.6
 Identities = 25/97 (26%), Positives = 37/97 (38%), Gaps = 18/97 (19%)

Query  247  DNAVVGNKFENYSDG-------LQINWGKRNYIA-YNELTNNSL--GFNLTGDGNIFDS-  295
            DNA   N+FE + +G         IN    NYI  +  +  N L    +LTGD    +  
Sbjct  91   DNA---NRFEGHINGNGYRITGFFINRTDGNYIGLFGVIGENGLVRNLSLTGDYITVEGA  147

Query  296  ----NKVHGNRIGIAIRSEKDANARITLTKNQIWDNG  328
                  + GN  G+      +    ITL+    +  G
Sbjct  148  PALVGALTGNNYGVIDNVSVEIGDGITLSPQSAYVGG  184


 Score = 18.5 bits (36),  Expect = 1.6
 Identities = 7/16 (44%), Positives = 10/16 (63%), Gaps = 0/16 (0%)

Query  64   KAPYVIKVDKPLPPIK  79
            +A Y   + +PLPP K
Sbjct  608  EAEYGTAITEPLPPEK  623


 Score = 17.3 bits (33),  Expect = 3.6
 Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 0/25 (0%)

Query  83   KIIGTEWDKTGEFIAIDGSNYIKGE  107
            K +  +W      +  DG++Y  G+
Sbjct  502  KTLYAQWSINKYDVHFDGNDYDSGQ  526


 Score = 16.9 bits (32),  Expect = 4.7
 Identities = 14/49 (29%), Positives = 22/49 (45%), Gaps = 1/49 (2%)

Query  289  DGNIFDSNKVHGNRIGIAIRSEKDANARITLTKNQIWDNGKDIKRCEAG  337
            DGN +DS +       I   SE +   + TL K+     G + +R  +G
Sbjct  518  DGNDYDSGQAPLTET-ILYESEVNVPDQHTLVKDGYTFTGWNTERDGSG  565


 Score = 16.5 bits (31),  Expect = 6.2
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 8/45 (18%)

Query  71   VDKPLPPIKSSV--------KIIGTEWDKTGEFIAIDGSNYIKGE  107
            +++P PP K           K++   W+   + +  D + Y K E
Sbjct  757  IEEPTPPEKEGHSFKGWYQDKLLTEAWEFETDTVIGDMTLYAKWE  801



Lambda      K        H        a         alpha
   0.314    0.133    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 565528


  Database: f1c6ee470040666325d8a5b238920202.SwissProt.fasta
    Posted date:  May 20, 2024  4:11 AM
  Number of letters in database: 1,350
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40