BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 28af7b42a12200fe90badd20fcac50d7.SwissProt.fasta
6 sequences; 2,231 total letters
Query= ACIAD1749
Length=337
Score E
Sequences producing significant alignments: (Bits) Value
P0ABK3 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 161 3e-50
P0ABK4 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 161 3e-50
P0ABK2 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 161 3e-50
P94365 Cytochrome bd ubiquinol oxidase subunit 2 [Bacillus subtil... 157 6e-49
P26458 Cytochrome bd-II ubiquinol oxidase subunit 2 [Escherichia ... 151 2e-46
P45020 Probable cytochrome oxidase subunit 2 [Haemophilus influen... 149 1e-45
>P0ABK3 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=379
Score = 161 bits (408), Expect = 3e-50
Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 46/363 (13%)
Query 3 MID---LSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGN 58
MID L IW +++ V + + V DGFD+G+G+L F+ ++ ER +M+N++AP WDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 59 ETWMVLGGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKANRT--KHLWD 116
+ W++ G LFAA+PMVY+A S Y+ +IL++ +L FR V F++R K T +++WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 117 AAFIGGSIISSFLQGVILGAYIQGIHI-VDG----RYAGGGLDWLTPFSLFTGVGVVVVY 171
GS + + GV G +QG+ VD Y G L PF L GV V +
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 172 AALGCGWLIMKTDHRLQL------NMYSLMPKLMYALLIIFVCVSI-------------- 211
G +L M+T L L + +L+ + +AL ++V I
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240
Query 212 YTPLSQPQI--AARWFTQPQLT-YFSPVPILVVIFTFLTVRACSKRQESMPFLY---TLA 265
PL++ + A W T +P L V+ LT+ + + F++ TLA
Sbjct 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300
Query 266 LVFLAYTGFLISIFPYIIP------PSVTIWDAAAPANSQLFALIGALILIPIIIMYTIM 319
+ L I++FP+++P S+T+WDA + + A++L+PII++YT
Sbjct 301 CIILTAG---IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357
Query 320 AYW 322
YW
Sbjct 358 CYW 360
>P0ABK4 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli O157:H7]
Length=379
Score = 161 bits (408), Expect = 3e-50
Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 46/363 (13%)
Query 3 MID---LSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGN 58
MID L IW +++ V + + V DGFD+G+G+L F+ ++ ER +M+N++AP WDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 59 ETWMVLGGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKANRT--KHLWD 116
+ W++ G LFAA+PMVY+A S Y+ +IL++ +L FR V F++R K T +++WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 117 AAFIGGSIISSFLQGVILGAYIQGIHI-VDG----RYAGGGLDWLTPFSLFTGVGVVVVY 171
GS + + GV G +QG+ VD Y G L PF L GV V +
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 172 AALGCGWLIMKTDHRLQL------NMYSLMPKLMYALLIIFVCVSI-------------- 211
G +L M+T L L + +L+ + +AL ++V I
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240
Query 212 YTPLSQPQI--AARWFTQPQLT-YFSPVPILVVIFTFLTVRACSKRQESMPFLY---TLA 265
PL++ + A W T +P L V+ LT+ + + F++ TLA
Sbjct 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300
Query 266 LVFLAYTGFLISIFPYIIP------PSVTIWDAAAPANSQLFALIGALILIPIIIMYTIM 319
+ L I++FP+++P S+T+WDA + + A++L+PII++YT
Sbjct 301 CIILTAG---IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357
Query 320 AYW 322
YW
Sbjct 358 CYW 360
>P0ABK2 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli (strain K12)]
Length=379
Score = 161 bits (408), Expect = 3e-50
Identities = 113/363 (31%), Positives = 182/363 (50%), Gaps = 46/363 (13%)
Query 3 MID---LSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGN 58
MID L IW +++ V + + V DGFD+G+G+L F+ ++ ER +M+N++AP WDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 59 ETWMVLGGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKANRT--KHLWD 116
+ W++ G LFAA+PMVY+A S Y+ +IL++ +L FR V F++R K T +++WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 117 AAFIGGSIISSFLQGVILGAYIQGIHI-VDG----RYAGGGLDWLTPFSLFTGVGVVVVY 171
GS + + GV G +QG+ VD Y G L PF L GV V +
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 172 AALGCGWLIMKTDHRLQL------NMYSLMPKLMYALLIIFVCVSI-------------- 211
G +L M+T L L + +L+ + +AL ++V I
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240
Query 212 YTPLSQPQI--AARWFTQPQLT-YFSPVPILVVIFTFLTVRACSKRQESMPFLY---TLA 265
PL++ + A W T +P L V+ LT+ + + F++ TLA
Sbjct 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300
Query 266 LVFLAYTGFLISIFPYIIP------PSVTIWDAAAPANSQLFALIGALILIPIIIMYTIM 319
+ L I++FP+++P S+T+WDA + + A++L+PII++YT
Sbjct 301 CIILTAG---IAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAW 357
Query 320 AYW 322
YW
Sbjct 358 CYW 360
>P94365 Cytochrome bd ubiquinol oxidase subunit 2 [Bacillus subtilis
(strain 168)]
Length=338
Score = 157 bits (396), Expect = 6e-49
Identities = 105/336 (31%), Positives = 177/336 (53%), Gaps = 16/336 (5%)
Query 3 MIDLSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGNETW 61
M L +W +++AV + L+GFD G+G+ F+ ++ ER V++NT+ P WD NE W
Sbjct 1 MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVW 60
Query 62 MVLGGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKANRTK--HLWDAAF 119
++ G +FAAFP Y+ +LS Y+P +++++AL+ RGVAFEFR K + K +WD
Sbjct 61 LLTGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVV 120
Query 120 IGGSIISSFLQGVILGAYIQGIHI-VDGRYAGGGLDWLTPFSLFTGVGVVVVYAALGCGW 178
GS+I F+ GV+ +G+ I D D++ +S+ GV V ++ G +
Sbjct 121 FFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVSDYINVYSILGGVTVTLLCFQHGLMF 180
Query 179 LIMKTDHRLQLNMYSLMPKLMYALLIIFVCVSIYTPLSQPQIAARWFTQPQLTYFSPVPI 238
+ ++T LQ + K+M ++FV V + LS Q + + ++T P+ +
Sbjct 181 ITLRTIGDLQNRARKMAQKIMG---VVFVAVLAFAALSAYQ-TDMFTRRGEITI--PLAV 234
Query 239 LVVIFTFLTVRACSKRQESMPFLYTLALVFLAYTGFLISIFPYIIPPS------VTIWDA 292
L+VI L K+++ F T A + L IS+FP ++ S +T+ +A
Sbjct 235 LIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVGMIFISLFPRVMVSSLHSAYDLTVANA 294
Query 293 AAPANSQLFALIGALILIPIIIMYTIMAYWVFRDKV 328
++ S I AL L+P +I I +Y+VFR +V
Sbjct 295 SSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRKRV 330
>P26458 Cytochrome bd-II ubiquinol oxidase subunit 2 [Escherichia
coli (strain K12)]
Length=378
Score = 151 bits (381), Expect = 2e-46
Identities = 103/356 (29%), Positives = 176/356 (49%), Gaps = 42/356 (12%)
Query 6 LSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGNETWMVL 64
L IW ++I V + ++++ DGFD+GIG L P + ++ ER +++N+V W+GN+ W++L
Sbjct 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66
Query 65 GGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKAN--RTKHLWDAAFIGG 122
G LFAA+P VY+A S Y+ +IL++ +L FR +AF++R K R + +WDA + G
Sbjct 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126
Query 123 SIISSFLQGVILGAYIQGIHI-----VDGRYAGGGLDWLTPFSLFTGVGVVVVYAALGCG 177
S++ + G+ G + G+ + Y G LTPF L G+ + + G
Sbjct 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186
Query 178 WLIMKT------DHRLQLNMYSLMPKLMYALLIIFVCVSI--YTPLSQPQ---------- 219
WL +KT +L +L+ L + L ++ V I + L+Q
Sbjct 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246
Query 220 ---IAARWFTQ----PQLTYFSPVPILVVIFTFLTVRACSKRQESMPFLYTLALVFLAYT 272
+ W P L F P+L LTV A + + FL + F
Sbjct 247 VAVLPGAWMNNFVESPVLWIF---PLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303
Query 273 GFLISIFPYIIPPSV------TIWDAAAPANSQLFALIGALILIPIIIMYTIMAYW 322
I++FP+++P SV T+WD+ + + L+ LI +PI+++YT+ +Y+
Sbjct 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359
>P45020 Probable cytochrome oxidase subunit 2 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=378
Score = 149 bits (376), Expect = 1e-45
Identities = 105/358 (29%), Positives = 165/358 (46%), Gaps = 39/358 (11%)
Query 3 MID---LSLIWIVIIAVGVFIYIVLDGFDLGIGILFPFI-KDQHERDVMMNTVAPVWDGN 58
MID L IW V++ V + + V DGFD+G+ L P I K + ER +M+NT+AP WDGN
Sbjct 1 MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN 60
Query 59 ETWMVLGGAGLFAAFPMVYSAVLSALYLPIILMVIALIFRGVAFEFRFKANRT--KHLWD 116
+ W++ G +FAA+P+VY+ S Y+ ++L++ AL R + FE+R K + + +WD
Sbjct 61 QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD 120
Query 117 AAFIGGSIISSFLQGVILGAYIQGI-----HIVDGRYAGGGLDWLTPFSLFTGVGVVVVY 171
G + + + GV G +QG+ + Y G + L PF+L GV + +
Sbjct 121 WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML 180
Query 172 AALGCGWLIMKTDHRLQLNMYSLMPKLMYALLIIFVCVSI----------------YTPL 215
G WL MKT L+ ++ LI FV + + P
Sbjct 181 VTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLYSKDGYVVTSTIDHFAPS 240
Query 216 SQPQIAARWFTQPQLTYFSPVPILVVIFTFLTVRACSKRQESMPFLYTLALVFLAYT--G 273
S T F+ +PIL + V A S A F A T G
Sbjct 241 SPMNKEVAVETGAWFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALTMAG 300
Query 274 FLI----SIFPYIIP------PSVTIWDAAAPANSQLFALIGALILIPIIIMYTIMAY 321
+I S+FP+++P S+ +WD+ + + LI A++ + I + YTI +Y
Sbjct 301 VIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWSY 358
Lambda K H a alpha
0.334 0.148 0.477 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 587560
Database: 28af7b42a12200fe90badd20fcac50d7.SwissProt.fasta
Posted date: May 8, 2024 4:37 PM
Number of letters in database: 2,231
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
