BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5dec7b8d2c78a6e2c6707f0c1e3c2a89.SwissProt.fasta
2 sequences; 834 total letters
Query= ACIAD1757
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
O06927 Malonyl-S-ACP:biotin-protein carboxyltransferase MADD [Mal... 111 3e-33
Q30SX1 Chaperonin GroEL [Sulfurimonas denitrificans (strain ATCC ... 35.8 2e-06
>O06927 Malonyl-S-ACP:biotin-protein carboxyltransferase MADD
[Malonomonas rubra]
Length=292
Score = 111 bits (278), Expect = 3e-33
Identities = 71/231 (31%), Positives = 122/231 (53%), Gaps = 14/231 (6%)
Query 36 LIAEGQLGENKISVFCVVPDSHNH-FPRARQGEVGLLEGWSLAQAIDQIIESDQNL--TH 92
++ Q+G+ ++ + N FP G +GL EG+ +A A+ + IE+D+ T
Sbjct 41 VVGTAQIGDQDCTIIASDAMAMNERFPVVYAGIIGLEEGYKMAMAVYKTIEADKEKKGTE 100
Query 93 KRGILCIVDVPSQAYGRREELLGIHQALAAAADSYVRARLAGHPVVSLLVGKSMSGAFLA 152
KR IL IVD P G++EE+ G++++ A + AR AGHP+V++++G+++SGAFL
Sbjct 101 KRPILLIVDTPGNGPGKQEEIFGMNKSTGAYQLALAEARKAGHPIVAMVIGRAISGAFLC 160
Query 153 HGYQANRILALKDQ-GVMVHAMGKESAARVTLRTVDELENLAANIPPMAYDIESYNSLGL 211
HG QA+RIL+L + M+H M S + +T ++ LE L+ P A + + LG
Sbjct 161 HGLQADRILSLSSKFETMIHVMPLTSVSVITKLDIERLEELSKTNPVFAAGPDFFYQLGG 220
Query 212 LSGLLNVSHADHPTTSDIDYIQQTLSQTFQEIRNQGTSDLKHRLSAKNREA 262
+ L+ ++D ++ + + EIR + + RL R A
Sbjct 221 VEELV----------EEVDGMRSCILKHIAEIREMKAAGEEARLGPWGRGA 261
>Q30SX1 Chaperonin GroEL [Sulfurimonas denitrificans (strain ATCC
33889 / DSM 1251)]
Length=542
Score = 35.8 bits (81), Expect = 2e-06
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 18/123 (15%)
Query 94 RGILCIVDVPSQAYG-RREELLGIHQALAAAADSYVRARLAGHPVVSLLVGKSMSGAFLA 152
RG+L I V + +G RR+ +L L A V+S G ++SGA +
Sbjct 267 RGVLNISAVKAPGFGDRRKAMLQDIAVLTAGT------------VISEETGHTLSGATIQ 314
Query 153 HGYQANRILALKDQGVMVHAMGKESAARVTLRTVDELENLAANIPPMAYDIESYNS-LGL 211
H QA+RI+ KD V+V+ G A + + + + N YD E L
Sbjct 315 HLGQASRIVIDKDNTVIVNGAGTSEAVQARVDAI----KVQMNTTTSEYDKEKLQERLAK 370
Query 212 LSG 214
LSG
Sbjct 371 LSG 373
Score = 19.2 bits (38), Expect = 0.28
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (2%)
Query 142 VGKSMSGAFLAHGYQANRILALKDQGVMVHAMGKESAARVTLRTVDELENLAANI 196
V K + G + +L K G + S AR + D+LEN+ A +
Sbjct 19 VAKLTDAVKVTMGPRGRNVLIQKSYGNPIITKDGVSVAR-EIELQDKLENMGATL 72
Score = 17.7 bits (34), Expect = 0.87
Identities = 14/61 (23%), Positives = 29/61 (48%), Gaps = 4/61 (7%)
Query 172 AMGKESAARVTLRTVDELENLAANIPPMAYDIE----SYNSLGLLSGLLNVSHADHPTTS 227
A K ++ + L +++++ + + +A D+E S + L G+LN+S P
Sbjct 222 ADSKIASLKDLLPVLEQVQKTSRPLLIIAEDVEGEALSTLVVNKLRGVLNISAVKAPGFG 281
Query 228 D 228
D
Sbjct 282 D 282
Score = 17.3 bits (33), Expect = 1.1
Identities = 8/18 (44%), Positives = 10/18 (56%), Gaps = 0/18 (0%)
Query 5 VNAVKNSTRGKHWFNLLT 22
VNAV+ +T FN T
Sbjct 463 VNAVEGATNENIGFNAAT 480
Lambda K H a alpha
0.320 0.134 0.386 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 186624
Database: 5dec7b8d2c78a6e2c6707f0c1e3c2a89.SwissProt.fasta
Posted date: May 9, 2024 12:22 PM
Number of letters in database: 834
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
