BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 988192e472c6f23418f1553ff93dff70.SwissProt.fasta
15 sequences; 3,254 total letters
Query= ACIAD1778
Length=162
Score E
Sequences producing significant alignments: (Bits) Value
P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli ... 138 7e-46
O07627 RNA polymerase sigma factor YlaC [Bacillus subtilis (strai... 66.2 9e-18
A0R2D4 ECF RNA polymerase sigma factor SigE [Mycolicibacterium sm... 65.1 8e-17
P9WGG6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 61.2 2e-15
P9WGG7 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 61.2 2e-15
H8F0N6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberc... 61.2 2e-15
Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis (s... 47.0 1e-10
P46358 Probable RNA polymerase sigma factor RfaY [Xanthomonas cam... 47.4 2e-10
P9WGH4 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberc... 40.0 4e-08
P9WGH5 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberc... 40.0 4e-08
H8EXN1 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberc... 40.0 4e-08
P44790 ECF RNA polymerase sigma-E factor [Haemophilus influenzae ... 34.3 4e-06
P0A2F1 ECF RNA polymerase sigma-E factor [Salmonella typhi] 32.7 1e-05
P0A2F0 ECF RNA polymerase sigma-E factor [Salmonella typhimurium ... 32.7 1e-05
D0ZSY9 ECF RNA polymerase sigma-E factor [Salmonella typhimurium ... 32.7 1e-05
>P23484 Ferric citrate uptake sigma factor FecI [Escherichia coli
(strain K12)]
Length=173
Score = 138 bits (348), Expect = 7e-46
Identities = 68/155 (44%), Positives = 105/155 (68%), Gaps = 0/155 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LY HH W+ +WL R+L ++ DA D+AQDTF+RV+ ++L I PR++L T+AK +M++
Sbjct 16 LYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVD 75
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
F R +E+AYLE+LA PE PSPE+R +ETL + +LD L + R+ FL +QL+
Sbjct 76 LFRRNALEKAYLEMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLD 135
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
+ Y +IA + +S+S+VK+++ KA HCL L+
Sbjct 136 GLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE 170
>O07627 RNA polymerase sigma factor YlaC [Bacillus subtilis (strain
168)]
Length=173
Score = 66.2 bits (160), Expect = 9e-18
Identities = 46/149 (31%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVIT-RKSLLEIEQPRAYLTTVAKSLML 60
LYR+++ I +L+RR + A DLAQDTF++ + S R +L T+A +
Sbjct 10 LYRQYYQEILNYLFRRTHHLETAKDLAQDTFVKALNGLASFRGHSSIRTWLYTIAHHTFI 69
Query 61 NWFNRRNIEQAYLEVLANQ--PEFEHPSPEQRYLIVETLIEVI-QLLDTLPDQIRDVFLH 117
NW+ RR+++ + E+ N+ + + PEQ YL E + Q L L DQ + V +
Sbjct 70 NWY-RRDVKYQFTEISKNEGLTQTTYDQPEQ-YLSRTVKSETLRQELLKLKDQHQSVLIL 127
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKA 146
+ + ++Y++IA+ SLS V + +A
Sbjct 128 REFQELSYEEIAEILGWSLSKVNTTLHRA 156
>A0R2D4 ECF RNA polymerase sigma factor SigE [Mycolicibacterium
smegmatis (strain ATCC 700084 / mc(2)155)]
Length=257
Score = 65.1 bits (157), Expect = 8e-17
Identities = 43/145 (30%), Positives = 67/145 (46%), Gaps = 1/145 (1%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
L R+H +Y YR GN DA DL Q+TFIRV + +L + +L L+
Sbjct 93 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLD 152
Query 62 WFNRR-NIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
RR I L ++ E P+PEQ Y ++ LD+LP + R + +
Sbjct 153 MVRRRGRIRMEALPEDYDRVPAEDPNPEQIYHDSRLGADLQAALDSLPPEFRAAVVLCDI 212
Query 121 ENMNYQQIADQFNLSLSTVKRHIKK 145
E ++Y++I + L TV+ I +
Sbjct 213 EGLSYEEIGATLGVKLGTVRSRIHR 237
>P9WGG6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=257
Score = 61.2 bits (147), Expect = 2e-15
Identities = 41/145 (28%), Positives = 66/145 (46%), Gaps = 1/145 (1%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
L R+H +Y YR GN DA DL Q+TFIRV + +L + +L L+
Sbjct 87 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLD 146
Query 62 WFNRR-NIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
RR I L ++ + P+PEQ Y ++ L +LP + R + +
Sbjct 147 MVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDI 206
Query 121 ENMNYQQIADQFNLSLSTVKRHIKK 145
E ++Y++I + L TV+ I +
Sbjct 207 EGLSYEEIGATLGVKLGTVRSRIHR 231
>P9WGG7 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=257
Score = 61.2 bits (147), Expect = 2e-15
Identities = 41/145 (28%), Positives = 66/145 (46%), Gaps = 1/145 (1%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
L R+H +Y YR GN DA DL Q+TFIRV + +L + +L L+
Sbjct 87 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLD 146
Query 62 WFNRR-NIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
RR I L ++ + P+PEQ Y ++ L +LP + R + +
Sbjct 147 MVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDI 206
Query 121 ENMNYQQIADQFNLSLSTVKRHIKK 145
E ++Y++I + L TV+ I +
Sbjct 207 EGLSYEEIGATLGVKLGTVRSRIHR 231
>H8F0N6 ECF RNA polymerase sigma factor SigE [Mycobacterium tuberculosis
(strain ATCC 35801 / TMC 107 / Erdman)]
Length=257
Score = 61.2 bits (147), Expect = 2e-15
Identities = 41/145 (28%), Positives = 66/145 (46%), Gaps = 1/145 (1%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
L R+H +Y YR GN DA DL Q+TFIRV + +L + +L L+
Sbjct 87 LVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSVQNYQPGTFEGWLHRITTNLFLD 146
Query 62 WFNRR-NIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
RR I L ++ + P+PEQ Y ++ L +LP + R + +
Sbjct 147 MVRRRARIRMEALPEDYDRVPADEPNPEQIYHDARLGPDLQAALASLPPEFRAAVVLCDI 206
Query 121 ENMNYQQIADQFNLSLSTVKRHIKK 145
E ++Y++I + L TV+ I +
Sbjct 207 EGLSYEEIGATLGVKLGTVRSRIHR 231
>Q45585 ECF RNA polymerase sigma factor SigW [Bacillus subtilis
(strain 168)]
Length=187
Score = 47.0 bits (110), Expect = 1e-10
Identities = 36/146 (25%), Positives = 68/146 (47%), Gaps = 11/146 (8%)
Query 10 IYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQP-RAYLTTVAKSLMLNWFNRRNI 68
IY YR LGN +A D+AQ+ FIR +I + +L +A +L ++ ++
Sbjct 31 IYQLCYRMLGNVHEAEDIAQEAFIRAYVNIDSFDINRKFSTWLYRIATNLTIDRIRKKKP 90
Query 69 EQAYLE---------VLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQ 119
+ YL+ + +Q + PE + +E + Q + LPD+ R V +
Sbjct 91 DY-YLDAEVAGTEGLTMYSQIVADGVLPEDAVVSLELSNTIQQKILKLPDKYRTVIVLKY 149
Query 120 LENMNYQQIADQFNLSLSTVKRHIKK 145
++ ++ +I + N+ + TVK I +
Sbjct 150 IDELSLIEIGEILNIPVGTVKTRIHR 175
>P46358 Probable RNA polymerase sigma factor RfaY [Xanthomonas
campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB
528 / LMG 568 / P 25)]
Length=400
Score = 47.4 bits (111), Expect = 2e-10
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query 22 ADAADLAQDTFIRVITRKSLLEIEQPRAYLT---TVAKSLMLNWFN---RRNIEQAYLEV 75
A + D+AQ+ F+R R L ++ QP ++L + ++L +W R + ++
Sbjct 48 AASEDIAQEAFLRAWQR--LAQLHQPASFLPWLRQITRNLARDWLRSHRHRPLSGEAADL 105
Query 76 LANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLENMNYQQIADQFNLS 135
PSP ++ L VE ++++ LP+ R++ L E QQ+A LS
Sbjct 106 AIAMAADPSPSPAEQALQVEEERAALEIMSALPNDSREILLLYYREGQRSQQVASLLGLS 165
Query 136 LSTVKRHIKKA 146
+ V++ + +A
Sbjct 166 DAAVRKRLSRA 176
>P9WGH4 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=177
Score = 40.0 bits (92), Expect = 4e-08
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 10/150 (7%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLL-EIEQP-RAYLTTVAKSLM 59
LY EH + ++ + R G++A A D+ Q+T +R ++ + +P RA+L TVA++++
Sbjct 18 LYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMI 77
Query 60 LNWFNRRNIEQAYLEVLANQPEF---EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFL 116
++ RR+ + V+ + + E +P++ ++ L+ + L L + R V
Sbjct 78 ID--ERRSAR--FRNVVGSTDQSGTPEQSTPDEVNAALDRLL-IADALAQLSAEHRAVIQ 132
Query 117 HAQLENMNYQQIADQFNLSLSTVKRHIKKA 146
+ + QIA ++ TVK + A
Sbjct 133 RSYYRGWSTAQIATDLGIAEGTVKSRLHYA 162
>P9WGH5 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=177
Score = 40.0 bits (92), Expect = 4e-08
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 10/150 (7%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLL-EIEQP-RAYLTTVAKSLM 59
LY EH + ++ + R G++A A D+ Q+T +R ++ + +P RA+L TVA++++
Sbjct 18 LYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMI 77
Query 60 LNWFNRRNIEQAYLEVLANQPEF---EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFL 116
++ RR+ + V+ + + E +P++ ++ L+ + L L + R V
Sbjct 78 ID--ERRSAR--FRNVVGSTDQSGTPEQSTPDEVNAALDRLL-IADALAQLSAEHRAVIQ 132
Query 117 HAQLENMNYQQIADQFNLSLSTVKRHIKKA 146
+ + QIA ++ TVK + A
Sbjct 133 RSYYRGWSTAQIATDLGIAEGTVKSRLHYA 162
>H8EXN1 ECF RNA polymerase sigma factor SigL [Mycobacterium tuberculosis
(strain ATCC 35801 / TMC 107 / Erdman)]
Length=177
Score = 40.0 bits (92), Expect = 4e-08
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 10/150 (7%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLL-EIEQP-RAYLTTVAKSLM 59
LY EH + ++ + R G++A A D+ Q+T +R ++ + +P RA+L TVA++++
Sbjct 18 LYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMI 77
Query 60 LNWFNRRNIEQAYLEVLANQPEF---EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFL 116
++ RR+ + V+ + + E +P++ ++ L+ + L L + R V
Sbjct 78 ID--ERRSAR--FRNVVGSTDQSGTPEQSTPDEVNAALDRLL-IADALAQLSAEHRAVIQ 132
Query 117 HAQLENMNYQQIADQFNLSLSTVKRHIKKA 146
+ + QIA ++ TVK + A
Sbjct 133 RSYYRGWSTAQIATDLGIAEGTVKSRLHYA 162
>P44790 ECF RNA polymerase sigma-E factor [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=189
Score = 34.3 bits (77), Expect = 4e-06
Identities = 31/144 (22%), Positives = 60/144 (42%), Gaps = 13/144 (9%)
Query 14 LYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLT---TVAKSLMLNWFNRRNIEQ 70
L R + D D+ Q++FI+ +S+ A+ T +A + N+ +
Sbjct 36 LLTRYVSRNDIPDVVQESFIKAY--RSIESFRGESAFYTWLYRIAVNTAKNYLTAQGRRP 93
Query 71 AYLEVLANQPEF--------EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLEN 122
++LA E + +PE L E V + LP+ ++ +LE
Sbjct 94 PNEDILAEDAENYDVGTHLRDVDTPENEMLSSELERIVFDTIHNLPEDLKTAITLRELEG 153
Query 123 MNYQQIADQFNLSLSTVKRHIKKA 146
++Y+ IA+ + + TV+ I +A
Sbjct 154 LSYEDIAEIMDCPVGTVRSRIFRA 177
>P0A2F1 ECF RNA polymerase sigma-E factor [Salmonella typhi]
Length=191
Score = 32.7 bits (73), Expect = 1e-05
Identities = 33/144 (23%), Positives = 63/144 (44%), Gaps = 13/144 (9%)
Query 14 LYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLT---TVAKSLMLNWFNRRNIEQ 70
L R S D D+ Q++FI+ ++L A+ T +A + N+ +
Sbjct 36 LVSRYVPSGDVPDVVQESFIKAY--RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP 93
Query 71 AYLEVLANQPEF--------EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLEN 122
+V A + E E +PE L E V + +++LP+ +R +L+
Sbjct 94 PSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDG 153
Query 123 MNYQQIADQFNLSLSTVKRHIKKA 146
++Y++IA + + TV+ I +A
Sbjct 154 LSYEEIAAIMDCPVGTVRSRIFRA 177
>P0A2F0 ECF RNA polymerase sigma-E factor [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=191
Score = 32.7 bits (73), Expect = 1e-05
Identities = 33/144 (23%), Positives = 63/144 (44%), Gaps = 13/144 (9%)
Query 14 LYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLT---TVAKSLMLNWFNRRNIEQ 70
L R S D D+ Q++FI+ ++L A+ T +A + N+ +
Sbjct 36 LVSRYVPSGDVPDVVQESFIKAY--RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP 93
Query 71 AYLEVLANQPEF--------EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLEN 122
+V A + E E +PE L E V + +++LP+ +R +L+
Sbjct 94 PSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDG 153
Query 123 MNYQQIADQFNLSLSTVKRHIKKA 146
++Y++IA + + TV+ I +A
Sbjct 154 LSYEEIAAIMDCPVGTVRSRIFRA 177
>D0ZSY9 ECF RNA polymerase sigma-E factor [Salmonella typhimurium
(strain 14028s / SGSC 2262)]
Length=191
Score = 32.7 bits (73), Expect = 1e-05
Identities = 33/144 (23%), Positives = 63/144 (44%), Gaps = 13/144 (9%)
Query 14 LYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLT---TVAKSLMLNWFNRRNIEQ 70
L R S D D+ Q++FI+ ++L A+ T +A + N+ +
Sbjct 36 LVSRYVPSGDVPDVVQESFIKAY--RALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRP 93
Query 71 AYLEVLANQPEF--------EHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLEN 122
+V A + E E +PE L E V + +++LP+ +R +L+
Sbjct 94 PSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDG 153
Query 123 MNYQQIADQFNLSLSTVKRHIKKA 146
++Y++IA + + TV+ I +A
Sbjct 154 LSYEEIAAIMDCPVGTVRSRIFRA 177
Lambda K H a alpha
0.328 0.138 0.418 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 337375
Database: 988192e472c6f23418f1553ff93dff70.SwissProt.fasta
Posted date: May 9, 2024 5:59 PM
Number of letters in database: 3,254
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
