BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 88e3aefdccf57271affa6a20fd5e1b09.TrEMBL.fasta
20 sequences; 3,407 total letters
Query= ACIAD1778
Length=162
Score E
Sequences producing significant alignments: (Bits) Value
Q6FBE7 Alternative RNAP sigma factor required for fecA promoter r... 327 1e-120
A0A7G2SG53 RNA polymerase subunit sigma [Acinetobacter sp] 327 3e-120
A0A3A8F5X0 Sigma-70 family RNA polymerase sigma factor [Acinetoba... 266 2e-96
S3P6G8 RNA polymerase sigma-70 factor, ECF subfamily [Acinetobact... 262 1e-94
A0A1B2LYV5 RNA polymerase subunit sigma [Acinetobacter larvae] 232 6e-83
A0A1Z9Z1H5 RNA polymerase subunit sigma [Acinetobacter populi] 228 2e-81
A0A1B2LZQ1 RNA polymerase subunit sigma [Acinetobacter larvae] 222 8e-79
N8YCI2 RNA polymerase sigma factor [Acinetobacter guillouiae NIPH... 219 8e-78
A0A072CUD4 RNA polymerase sigma factor [Acinetobacter sp. ETR1] 218 3e-77
Q8L1U9 RhuI [Bordetella avium] 152 2e-51
Q8L2E6 Heme uptake regulator [Bordetella pertussis] 146 4e-49
Q52208 PupI protein [Pseudomonas putida] 129 2e-42
A5I8G0 RNA polymerase sigma-70 factor [Aeromonas salmonicida subs... 107 2e-33
Q93JM8 EGF sigma factor PrhI [Ralstonia solanacearum] 105 6e-33
A0FHU0 Putative ECF sigma factor protein [uncultured bacterium] 87.0 1e-25
A0FHT9 Putative ECF sigma factor protein [uncultured bacterium] 84.7 9e-25
A0FHT5 Putative ECF sigma factor protein [uncultured bacterium] 83.6 2e-24
A0FHU3 Putative ECF sigma factor protein [uncultured bacterium] 82.8 5e-24
A0FHT7 Putative ECF sigma factor protein [uncultured bacterium] 82.8 5e-24
Q79AD4 HasI protein [Serratia marcescens] 67.4 3e-18
>Q6FBE7 Alternative RNAP sigma factor required for fecA promoter
recognition and ferric citrate transport activated by FecR
[Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=161
Score = 327 bits (838), Expect = 1e-120
Identities = 161/161 (100%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 60
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML
Sbjct 1 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 60
Query 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL
Sbjct 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
Query 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC 161
ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC
Sbjct 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC 161
>A0A7G2SG53 RNA polymerase subunit sigma [Acinetobacter sp]
Length=171
Score = 327 bits (837), Expect = 3e-120
Identities = 160/161 (99%), Positives = 161/161 (100%), Gaps = 0/161 (0%)
Query 1 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 60
MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML
Sbjct 11 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 70
Query 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEV+QLLDTLPDQIRDVFLHAQL
Sbjct 71 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVVQLLDTLPDQIRDVFLHAQL 130
Query 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC 161
ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC
Sbjct 131 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDFSC 171
>A0A3A8F5X0 Sigma-70 family RNA polymerase sigma factor [Acinetobacter
guerrae]
Length=169
Score = 266 bits (680), Expect = 2e-96
Identities = 124/155 (80%), Positives = 145/155 (94%), Gaps = 0/155 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LYR+HHSWIYTWLY++LGNSADAADLAQDTFIRV +K L EIEQPRAYLTTVAKSLM+N
Sbjct 12 LYRQHHSWIYTWLYKKLGNSADAADLAQDTFIRVFNKKPLHEIEQPRAYLTTVAKSLMMN 71
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
WFNR+ IEQAY+EVLA QPE+E PSPEQ YLI+ETL+EVIQLL+TLP Q+RDVFLHAQ+E
Sbjct 72 WFNRKRIEQAYIEVLAEQPEWEQPSPEQNYLIIETLVEVIQLLETLPRQVRDVFLHAQIE 131
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
+M+Y+QIA +FN+SLSTVKRH+KKAY+HCLTAML+
Sbjct 132 DMSYEQIACKFNISLSTVKRHMKKAYVHCLTAMLE 166
>S3P6G8 RNA polymerase sigma-70 factor, ECF subfamily [Acinetobacter
rudis CIP 110305]
Length=168
Score = 262 bits (669), Expect = 1e-94
Identities = 126/159 (79%), Positives = 147/159 (92%), Gaps = 1/159 (1%)
Query 1 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 60
+LY+EHH+WIYTWLY++LGNS+DAADLAQDTFIRV+ +K L EIEQPRAYLTTVAKSLML
Sbjct 11 VLYQEHHTWIYTWLYKKLGNSSDAADLAQDTFIRVL-KKPLHEIEQPRAYLTTVAKSLML 69
Query 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
N F+R+ IE+AYL+VLA QPE EHPSPEQ YLIVETL+EVIQLL+ LPDQ+R+VFLHAQL
Sbjct 70 NMFSRKRIEKAYLDVLAQQPELEHPSPEQSYLIVETLLEVIQLLEALPDQVRNVFLHAQL 129
Query 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTDF 159
E++ Y+QIA QFN+S+STVKRHIKKAYIHCLTAMLD DF
Sbjct 130 EDLTYEQIAGQFNISVSTVKRHIKKAYIHCLTAMLDADF 168
>A0A1B2LYV5 RNA polymerase subunit sigma [Acinetobacter larvae]
Length=170
Score = 232 bits (592), Expect = 6e-83
Identities = 109/155 (70%), Positives = 131/155 (85%), Gaps = 0/155 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LY++HHSWIY WLY RLGNSADAADLAQDTF+RV+TRK +EIEQPRAYLT+VAKSLM+N
Sbjct 13 LYQQHHSWIYRWLYHRLGNSADAADLAQDTFVRVMTRKQAVEIEQPRAYLTSVAKSLMIN 72
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
WF+R+ IE+AYLEVLA QPE E PSPE I+E+L+EV LL++LPD +RD FL+AQLE
Sbjct 73 WFHRKQIERAYLEVLATQPELEQPSPEYACEIIESLVEVTTLLNSLPDTVRDTFLYAQLE 132
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
M YQ IAD+ +SLSTVKR+I+KAY HCL M+D
Sbjct 133 GMKYQDIADRMGISLSTVKRYIQKAYTHCLLVMMD 167
>A0A1Z9Z1H5 RNA polymerase subunit sigma [Acinetobacter populi]
Length=171
Score = 228 bits (582), Expect = 2e-81
Identities = 102/157 (65%), Positives = 130/157 (83%), Gaps = 0/157 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LY++HHSWIYTWLYR+LGNS+DAADLAQDTF+RV+ R+ E++QPRAYLT +AK LM+N
Sbjct 13 LYQQHHSWIYTWLYRKLGNSSDAADLAQDTFVRVLARQQDFELQQPRAYLTKIAKGLMIN 72
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
W +NIE+AYLEVLA QPE EHPSPE+ LI+ETL E +QLL LP+ +R FL+ QLE
Sbjct 73 WIQHKNIERAYLEVLAEQPELEHPSPEKNVLIIETLTEAVQLLSELPETVRLTFLYVQLE 132
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTD 158
+ +QQ+AD+ N+S+STVKRHI++AYIHCL MLD +
Sbjct 133 GLKHQQVADKLNISISTVKRHIQQAYIHCLNLMLDAE 169
>A0A1B2LZQ1 RNA polymerase subunit sigma [Acinetobacter larvae]
Length=169
Score = 222 bits (565), Expect = 8e-79
Identities = 105/157 (67%), Positives = 127/157 (81%), Gaps = 0/157 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LYREHHSWIY WLY RLGNSADAADLA DTF+RV+ R+ IEQPRAYLT VAK LM++
Sbjct 12 LYREHHSWIYQWLYHRLGNSADAADLAHDTFLRVMVREHQYHIEQPRAYLTVVAKGLMVS 71
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
WF R++IE+ YL +LA + E HPS EQ YLI+ETL+E+ LL+ LP ++R FL+AQLE
Sbjct 72 WFRRKHIERNYLVLLAERSEQTHPSTEQHYLIIETLVEISLLLEDLPHEVRLSFLYAQLE 131
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLDTD 158
+ YQ IAD+ NLSLSTVKRH+KKAY+HCLTAM+D D
Sbjct 132 GLKYQDIADKLNLSLSTVKRHVKKAYLHCLTAMMDHD 168
>N8YCI2 RNA polymerase sigma factor [Acinetobacter guillouiae
NIPH 991]
Length=168
Score = 219 bits (558), Expect = 8e-78
Identities = 101/155 (65%), Positives = 132/155 (85%), Gaps = 0/155 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LY+EHHSW+YTWLY++LGNS+DAADLAQDTF+RV+ R+ +E+ QPRAYLTTVAK LM+N
Sbjct 13 LYQEHHSWVYTWLYKKLGNSSDAADLAQDTFLRVMARRQQIELLQPRAYLTTVAKGLMIN 72
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
W R++IE+AYL+VLA QPE E SPEQ LI+E+L+EV QLL+ LP +RD FL+AQLE
Sbjct 73 WIQRKHIERAYLDVLALQPELEEISPEQHCLIIESLLEVTQLLEQLPVVVRDTFLYAQLE 132
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
+ Y +IA + ++SLS+VKR++KKAY+HCL+AMLD
Sbjct 133 GLKYDEIAVKLDISLSSVKRYMKKAYVHCLSAMLD 167
>A0A072CUD4 RNA polymerase sigma factor [Acinetobacter sp. ETR1]
Length=168
Score = 218 bits (554), Expect = 3e-77
Identities = 100/155 (65%), Positives = 131/155 (85%), Gaps = 0/155 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LY+EHHSW+Y WLY++LGNS+DAADLAQDTF+RV+ R+ +E+ QPRAYLTTVAK LM+N
Sbjct 13 LYQEHHSWVYAWLYKKLGNSSDAADLAQDTFLRVMARRQQIELLQPRAYLTTVAKGLMIN 72
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
W R++IE+AYL+VLA QPE E SPEQ LI+E+L+EV QLL+ LP +RD FL+AQLE
Sbjct 73 WIQRKHIERAYLDVLALQPELEEISPEQHCLIIESLLEVTQLLEQLPAVVRDTFLYAQLE 132
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
+ Y +IA + ++SLS+VKR++KKAY+HCL+AMLD
Sbjct 133 GLKYDEIAVKLDISLSSVKRYMKKAYVHCLSAMLD 167
>Q8L1U9 RhuI [Bordetella avium]
Length=168
Score = 152 bits (384), Expect = 2e-51
Identities = 77/153 (50%), Positives = 104/153 (68%), Gaps = 1/153 (1%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVIT-RKSLLEIEQPRAYLTTVAKSLMLN 61
Y +HH W+ WL ++LGNS DAADLAQDTF+RV+ R+ L + +PRAYL T+A L+LN
Sbjct 13 YADHHGWLNGWLRKKLGNSFDAADLAQDTFVRVLRHRRELPGVREPRAYLVTIAGRLLLN 72
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
+ RR++E+AY E LA P PSPEQR LI E L ++ LL LP + R FL AQ+E
Sbjct 73 HYRRRSLERAYEEALAVMPLESAPSPEQRLLIFEALDQIDTLLSALPLKTRRAFLLAQVE 132
Query 122 NMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAM 154
+ Y +IA+Q +S+ TV+RHI +AY C+ M
Sbjct 133 QLPYAEIAEQLQISVRTVQRHILRAYEQCILVM 165
>Q8L2E6 Heme uptake regulator [Bordetella pertussis]
Length=169
Score = 146 bits (369), Expect = 4e-49
Identities = 72/151 (48%), Positives = 104/151 (69%), Gaps = 1/151 (1%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVIT-RKSLLEIEQPRAYLTTVAKSLML 60
LYREHH W+ +WL ++L ++ DAADLAQDTF+RV+ R L + +PRAYL T+A L++
Sbjct 15 LYREHHGWLQSWLRKKLNDAYDAADLAQDTFVRVLRHRAELATLREPRAYLLTIAGRLVV 74
Query 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
N + RR++E+AYLE LA+ P PSPEQR LI+E L ++ L +L ++R FL AQL
Sbjct 75 NHYRRRSLERAYLEALASLPPAHAPSPEQRALILEALDQIDAFLHSLAPKVRQAFLLAQL 134
Query 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCL 151
E + Y IA + +S+ TV+R+I + Y C+
Sbjct 135 ERLPYADIARRLQVSVRTVQRYIAQGYEQCI 165
>Q52208 PupI protein [Pseudomonas putida]
Length=173
Score = 129 bits (325), Expect = 2e-42
Identities = 67/156 (43%), Positives = 105/156 (67%), Gaps = 2/156 (1%)
Query 1 MLYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML 60
+LYR+ HSW+ WL +RL S AADLAQDTFIR++ ++ + ++ PR +L VA+S++
Sbjct 14 LLYRQQHSWLTRWLRQRLNCSQSAADLAQDTFIRLLNKEQVPQLHAPRTFLAKVAQSVLC 73
Query 61 NWFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQL 120
N + R+ +E+AYLE LA PE PS E + +++ETLI + LD L +R+ FL +Q+
Sbjct 74 NHYRRQKLERAYLEALAMLPEPVVPSLETQAILLETLIALDAALDGLERPVREAFLLSQV 133
Query 121 ENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAMLD 156
+ + + +IA + +S++TVKR+I KA C+ MLD
Sbjct 134 DGLGHTEIAQRLAVSVTTVKRYIIKAGALCI--MLD 167
>A5I8G0 RNA polymerase sigma-70 factor [Aeromonas salmonicida
subsp. salmonicida]
Length=172
Score = 107 bits (266), Expect = 2e-33
Identities = 55/142 (39%), Positives = 83/142 (58%), Gaps = 0/142 (0%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
LYR++H W+ L R+LGNS DAADLA D ++ +I + + + R YL +AK +++
Sbjct 15 LYRDNHGWLCRLLRRKLGNSYDAADLAHDIYLHLINKGHIPAASESRRYLMQIAKGKLID 74
Query 62 WFNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLE 121
+ RR++E YLE QP PS E R L+ E L V L P +IR L ++L
Sbjct 75 LYRRRSLEARYLERQTQQPALREPSEETRALMREALGAVDMALQRKPPKIRQALLLSRLN 134
Query 122 NMNYQQIADQFNLSLSTVKRHI 143
M YQ IA + +S+S+V+++I
Sbjct 135 GMGYQDIATELQVSVSSVEKYI 156
>Q93JM8 EGF sigma factor PrhI [Ralstonia solanacearum]
Length=169
Score = 105 bits (262), Expect = 6e-33
Identities = 54/151 (36%), Positives = 92/151 (61%), Gaps = 0/151 (0%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNW 62
+R+H++W+ + R+ G A DLA + F +++ +PRA LTT+A+ L+ +
Sbjct 16 FRQHYAWLAGRMGRKTGCRFGAEDLASEAFAQLLQMPDWQGTREPRALLTTIAQRLLYDI 75
Query 63 FNRRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHAQLEN 122
+ RR++E AY A QPE PSPE+R L++E L + +LLD LP + R FL++QL+
Sbjct 76 WRRRDLELAYQAWAAAQPEATLPSPEERALVLEALATIDRLLDGLPVKARTAFLYSQLDG 135
Query 123 MNYQQIADQFNLSLSTVKRHIKKAYIHCLTA 153
+ Y +IA + N+S+ V++++ +A C A
Sbjct 136 LTYPEIAGRLNVSVRMVQKYMTQAMRLCYLA 166
>A0FHU0 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 87.0 bits (214), Expect = 1e-25
Identities = 51/153 (33%), Positives = 84/153 (55%), Gaps = 5/153 (3%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNW 62
Y+ H + +L R LG+SADAADLAQDTF + + +EQPRA+L +A++L+ +
Sbjct 13 YQAFHGELLRFLRRHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72
Query 63 FNRRNIEQAYLEVLANQ-----PEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLH 117
+ R+ LE A PE E P +R+ + L + L LP + R+ F+
Sbjct 73 WRRQQSRGQDLERPAADDERAVPEAEVAGPGERFEHQQRLSHLAAALADLPPRRREAFVL 132
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKAYIHC 150
+ + ++ ++A + +SLS V++HI A +HC
Sbjct 133 HKFDGLSQAEVAARMGISLSMVEKHIASALLHC 165
>A0FHT9 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 84.7 bits (208), Expect = 9e-25
Identities = 50/153 (33%), Positives = 88/153 (58%), Gaps = 5/153 (3%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNW 62
Y+ H + +L + LG+SADAADLAQDTF + + +EQPRA+L +A++L+ +
Sbjct 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72
Query 63 FNRRNIEQAYLEVLA--NQP---EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLH 117
+ R+ L+ A ++P E E P +R+ + L + L LP + R+ F+
Sbjct 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFGQQQRLSHLAAALAELPPRRREAFVL 132
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKAYIHC 150
+L+ ++ ++A++ +SLS V++HI A +HC
Sbjct 133 HKLDGLSQVEVAERMGISLSMVEKHIASALLHC 165
>A0FHT5 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 83.6 bits (205), Expect = 2e-24
Identities = 49/153 (32%), Positives = 87/153 (57%), Gaps = 5/153 (3%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNW 62
Y+ H + +L + LG+SADAADLAQDTF + + +EQPRA+L +A++L+ +
Sbjct 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72
Query 63 FNRRNIEQAYLEVLA--NQP---EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLH 117
+ R+ L+ A ++P E E P +R+ + L + L LP + R+ F+
Sbjct 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVL 132
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKAYIHC 150
+ + ++ ++A++ +SLS V++HI A +HC
Sbjct 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHC 165
>A0FHU3 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 82.8 bits (203), Expect = 5e-24
Identities = 49/153 (32%), Positives = 87/153 (57%), Gaps = 5/153 (3%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLNW 62
Y+ H + +L + LG+SADAADLAQDTF + + +EQPRA+L +A++L+ +
Sbjct 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFDQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72
Query 63 FNRRNIEQAYLEVLA--NQP---EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLH 117
+ R+ L+ A ++P E E P +R+ + L + L LP + R+ F+
Sbjct 73 WRRQQSRGQDLDRPAANDEPAALEGEAAGPGERFEQQQRLSHLAAALAELPPRRREAFVL 132
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKAYIHC 150
+ + ++ ++A++ +SLS V++HI A +HC
Sbjct 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHC 165
>A0FHT7 Putative ECF sigma factor protein [uncultured bacterium]
Length=175
Score = 82.8 bits (203), Expect = 5e-24
Identities = 49/153 (32%), Positives = 85/153 (56%), Gaps = 5/153 (3%)
Query 3 YREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLML-N 61
Y+ H + +L + LG+SADAADLAQDTF + + +EQPRA+L +A++L+ +
Sbjct 13 YQAFHGELLRFLRKHLGSSADAADLAQDTFAQWLKWPGRQSVEQPRAFLFQIARNLLRDH 72
Query 62 WFNRRNIEQAYLEVLANQP----EFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLH 117
W +++ Q AN E E P +R+ + L + L LP + R+ F+
Sbjct 73 WRRQQSRGQDIDRPAANDEPAALEGEAAGPGERFGQQQRLSHLAAALAELPPRRREAFVL 132
Query 118 AQLENMNYQQIADQFNLSLSTVKRHIKKAYIHC 150
+ + ++ ++A++ +SLS V++HI A +HC
Sbjct 133 HKFDGLSQVEVAERMGISLSMVEKHIASALLHC 165
>Q79AD4 HasI protein [Serratia marcescens]
Length=166
Score = 67.4 bits (163), Expect = 3e-18
Identities = 49/156 (31%), Positives = 79/156 (51%), Gaps = 4/156 (3%)
Query 2 LYREHHSWIYTWLYRRLGNSADAADLAQDTFIRVITRKSLLEIEQPRAYLTTVAKSLMLN 61
L+ H + +L +L + AADLAQ++F R+ + I AYL AK+LML+
Sbjct 9 LFLRHMRPLQAYLNAKLRDPQLAADLAQESFTRLTEQYPQGNILDIEAYLYKTAKNLMLD 68
Query 62 WFN---RRNIEQAYLEVLANQPEFEHPSPEQRYLIVETLIEVIQLLDTLPDQIRDVFLHA 118
RR E ++LA P E P+ EQR + + L + Q L +P + + +F
Sbjct 69 HLRQQQRRQTEAVEDDILAQYPSGE-PALEQRAIDSQLLQLLQQALADMPPRTQQIFRLN 127
Query 119 QLENMNYQQIADQFNLSLSTVKRHIKKAYIHCLTAM 154
+L+ + Q+A Q +SLSTV++H+ A + M
Sbjct 128 RLDGLTQAQVAAQLGVSLSTVEKHLASALERLMARM 163
Lambda K H a alpha
0.328 0.138 0.418 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 333375
Database: 88e3aefdccf57271affa6a20fd5e1b09.TrEMBL.fasta
Posted date: May 9, 2024 10:34 AM
Number of letters in database: 3,407
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
