BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9f27b92fa3ccf8e1be33312943cb0dfa.SwissProt.fasta
3 sequences; 1,289 total letters
Query= ACIAD1784
Length=153
Score E
Sequences producing significant alignments: (Bits) Value
P36180 Probable cytochrome c biosynthesis protein [Marchantia pol... 38.5 8e-08
Q33884 Cytochrome c biogenesis CcmF N-terminal-like mitochondrial... 35.4 6e-07
Q04648 Probable cytochrome c biosynthesis protein [Oenothera bert... 35.0 1e-06
>P36180 Probable cytochrome c biosynthesis protein [Marchantia
polymorpha]
Length=509
Score = 38.5 bits (88), Expect = 8e-08
Identities = 35/119 (29%), Positives = 53/119 (45%), Gaps = 21/119 (18%)
Query 18 FLWVGMLTGVWKYYQIRHSEHARAHYYVDIAHRSSLL---YATA---SLILAVLSYFTVL 71
FL VG+L G W Y H ++ D +S + ATA S+IL L+ +T+
Sbjct 327 FLTVGILLGSWWAY---HELGWGGWWFWDPVENASFMPWVLATACIHSVILPKLNDWTLF 383
Query 72 SNHLTFLCVVANLFFFAFSILAYILHGLLKDTSNQFKQPHQLGNYVIPSWCMSLMMLSL 130
N +TFLC + FF +LA + H D++ I WC L++ S+
Sbjct 384 LNMVTFLCCILGTFFVRSGLLASV-HSFATDSTRG-----------IFLWCFFLLITSI 430
Score = 23.9 bits (50), Expect = 0.006
Identities = 14/42 (33%), Positives = 18/42 (43%), Gaps = 0/42 (0%)
Query 64 VLSYFTVLSNHLTFLCVVANLFFFAFSILAYILHGLLKDTSN 105
VLS F L+N L + V F F S + + D SN
Sbjct 40 VLSIFVALTNKLRPVVVSLYFFLFTMSFFGILFCYISSDFSN 81
Score = 18.9 bits (37), Expect = 0.27
Identities = 11/29 (38%), Positives = 16/29 (55%), Gaps = 4/29 (14%)
Query 67 YFTVLSNHLTFL----CVVANLFFFAFSI 91
YF VLS + VV +L+FF F++
Sbjct 37 YFLVLSIFVALTNKLRPVVVSLYFFLFTM 65
Score = 16.5 bits (31), Expect = 1.5
Identities = 5/5 (100%), Positives = 5/5 (100%), Gaps = 0/5 (0%)
Query 16 GIFLW 20
GIFLW
Sbjct 417 GIFLW 421
Score = 14.6 bits (26), Expect = 6.4
Identities = 4/8 (50%), Positives = 6/8 (75%), Gaps = 0/8 (0%)
Query 84 LFFFAFSI 91
+FFF F +
Sbjct 248 IFFFPFLV 255
>Q33884 Cytochrome c biogenesis CcmF N-terminal-like mitochondrial
protein 2 [Arabidopsis thaliana]
Length=203
Score = 35.4 bits (80), Expect = 6e-07
Identities = 31/96 (32%), Positives = 43/96 (45%), Gaps = 9/96 (9%)
Query 18 FLWVGMLTGVWKYYQIRHSEHARAHYYVDIAHRSSLL---YATA---SLILAVLSYFTVL 71
FL VG+L G W Y H ++ D +S + ATA S+IL +L +T+
Sbjct 52 FLTVGILLGSWWAY---HELGWGGWWFWDPVENASFMPWVLATACIHSVILPLLHSWTLF 108
Query 72 SNHLTFLCVVANLFFFAFSILAYILHGLLKDTSNQF 107
N +TFLC V F +LA + DT F
Sbjct 109 LNIVTFLCCVLGTFSIRSGLLASVHSFATDDTRGIF 144
Score = 21.2 bits (43), Expect = 0.041
Identities = 14/45 (31%), Positives = 25/45 (56%), Gaps = 5/45 (11%)
Query 16 GIFLW--VGMLTGVWK--YYQIRHSEHARAHYYVD-IAHRSSLLY 55
GIFLW ++TG+ +YQ++ R Y + + RS+L++
Sbjct 142 GIFLWWFFLLMTGISMILFYQMKQQASVRRTYKKEMVVARSTLVH 186
>Q04648 Probable cytochrome c biosynthesis protein [Oenothera
berteroana]
Length=577
Score = 35.0 bits (79), Expect = 1e-06
Identities = 32/96 (33%), Positives = 43/96 (45%), Gaps = 9/96 (9%)
Query 18 FLWVGMLTGVWKYYQIRHSEHARAHYYVDIAHRSSLL---YATA---SLILAVLSYFTVL 71
FL VG+L G W Y H ++ D +S + ATA S+IL +L T+L
Sbjct 426 FLNVGILLGSWWAY---HELGWGGWWFWDPVENASFMPWVLATACIHSVILPLLHSCTLL 482
Query 72 SNHLTFLCVVANLFFFAFSILAYILHGLLKDTSNQF 107
N +TFLC V F +LA + DT F
Sbjct 483 INIVTFLCCVLGTFSIRSGLLASVHSFATDDTRGIF 518
Score = 18.1 bits (35), Expect = 0.49
Identities = 13/45 (29%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query 16 GIFLW--VGMLTGVWK--YYQIRHSEHARAHYYVD-IAHRSSLLY 55
GIFLW ++TG+ + Q++ R Y + + RS+L++
Sbjct 516 GIFLWRFFLLMTGISMILFSQMKQQASVRRTYQKEMVVARSTLVH 560
Score = 17.7 bits (34), Expect = 0.65
Identities = 10/21 (48%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query 86 FFAFSILAYILHGLLKDTSNQ 106
FFAFS+L G L DT +
Sbjct 363 FFAFSLL---WTGALVDTGRE 380
Score = 15.0 bits (27), Expect = 4.8
Identities = 15/62 (24%), Positives = 26/62 (42%), Gaps = 4/62 (6%)
Query 10 WAIVFSGIFLWVGMLT--GVWKYYQIRHSEH--ARAHYYVDIAHRSSLLYATASLILAVL 65
W+ I LW +L+ G Y+ R H ++ Y + +L + IL++L
Sbjct 74 WSNHEGSILLWCWILSFYGFLLCYRGRPQSHNVSKRGGYRETFFYFFVLNFVKNFILSLL 133
Query 66 SY 67
Y
Sbjct 134 CY 135
Lambda K H a alpha
0.335 0.142 0.451 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 145912
Database: 9f27b92fa3ccf8e1be33312943cb0dfa.SwissProt.fasta
Posted date: May 29, 2024 11:28 AM
Number of letters in database: 1,289
Number of sequences in database: 3
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
