BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 17d4daf3867234ad979642bfcd626164.SwissProt.fasta
           1 sequences; 883 total letters



Query= ACIAD1789

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A5E1T3 Eukaryotic translation initiation factor 3 subunit A [Lodd...  35.4    2e-06


>A5E1T3 Eukaryotic translation initiation factor 3 subunit A [Lodderomyces 
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 
1781 / NBRC 1676 / NRRL YB-4239)]
Length=883

 Score = 35.4 bits (80),  Expect = 2e-06
 Identities = 21/62 (34%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query  168  EINA-----VDFISEKSTQKSKIQLENFDQINSRTKEFSRKNVDFQALIDFMEKQYLAFE  222
            EINA     VD  + K   KSK+QL   +Q+N   KE   K        D++E+ +  +E
Sbjct  646  EINAKGIIKVDMNNLKDLDKSKLQLMQIEQLNKDRKELEEKLKGTAKKADYLERAFRKYE  705

Query  223  VK  224
            +K
Sbjct  706  LK  707


 Score = 23.5 bits (49),  Expect = 0.011
 Identities = 19/83 (23%), Positives = 34/83 (41%), Gaps = 10/83 (12%)

Query  103  NLAEQLTKLMLINKNTLFRFYDPRVLIHLYMSKGLQILNTDIDRWLKRYFSIFETWSFDL  162
            N  E L ++  ++ N LF         +LY    +       D  LK+Y S+F   +  +
Sbjct  287  NYYENLARIFAVSDNALFHAAAWNKFFNLYSQSPMAT-----DEELKKYASVFVLSTLAI  341

Query  163  MEHSFEINAVDFISEKSTQKSKI  185
             +     +A+    E  T+ SK+
Sbjct  342  PQ-----SAIHDADEHRTKNSKL  359


 Score = 20.0 bits (40),  Expect = 0.14
 Identities = 27/94 (29%), Positives = 40/94 (43%), Gaps = 12/94 (13%)

Query  20   DQYLFRNLLSIYENEKVKYKILAINVFKEKRVAPIVIHIDSMSSALLQDYYENIYLIEQT  79
            ++ L R   +I ENEK K          E+  A  +I +D  +   L+D  ++   + Q 
Sbjct  625  EEKLQREKEAILENEKRK--------LAEEINAKGIIKVDMNN---LKDLDKSKLQLMQI  673

Query  80   EYLNKFDQMGLVQNLIKTDLNLDNLAEQLTKLML  113
            E LNK D+  L + L  T    D L     K  L
Sbjct  674  EQLNK-DRKELEEKLKGTAKKADYLERAFRKYEL  706


 Score = 18.5 bits (36),  Expect = 0.43
 Identities = 10/30 (33%), Positives = 17/30 (57%), Gaps = 4/30 (13%)

Query  92   QNLIKTDLN----LDNLAEQLTKLMLINKN  117
            + +IK D+N    LD    QL ++  +NK+
Sbjct  650  KGIIKVDMNNLKDLDKSKLQLMQIEQLNKD  679


 Score = 16.5 bits (31),  Expect = 1.7
 Identities = 4/9 (44%), Positives = 8/9 (89%), Gaps = 0/9 (0%)

Query  65   LLQDYYENI  73
            ++ +YYEN+
Sbjct  284  MMANYYENL  292


 Score = 16.5 bits (31),  Expect = 1.7
 Identities = 6/23 (26%), Positives = 13/23 (57%), Gaps = 0/23 (0%)

Query  65   LLQDYYENIYLIEQTEYLNKFDQ  87
            L ++ YEN+  ++  +    FD+
Sbjct  719  LEREQYENVKQLKVAKAKKDFDE  741



Lambda      K        H        a         alpha
   0.326    0.141    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 166796


  Database: 17d4daf3867234ad979642bfcd626164.SwissProt.fasta
    Posted date:  May 9, 2024  6:41 AM
  Number of letters in database: 883
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40