BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: bcf57c2ec8c64c74d05d13c651aa5b61.SwissProt.fasta
           1 sequences; 420 total letters



Query= ACIAD1801

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P55564 Putative kinase Y4mE [Sinorhizobium fredii (strain NBRC 10...  35.4    2e-06


>P55564 Putative kinase Y4mE [Sinorhizobium fredii (strain NBRC 
101917 / NGR234)]
Length=420

 Score = 35.4 bits (80),  Expect = 2e-06
 Identities = 16/49 (33%), Positives = 26/49 (53%), Gaps = 0/49 (0%)

Query  311  ICEWLQRDLLNIIFGNSDNHGRNTSFLKKSGKIVLAPIYDFAPMKADPE  359
            + + L   + N++ GN+D HG+N S L       +AP+YD     A P+
Sbjct  285  VLKLLDAAIFNLVVGNADAHGKNFSILYDDQGPKMAPLYDLLSTVAYPD  333


 Score = 16.5 bits (31),  Expect = 1.7
 Identities = 19/77 (25%), Positives = 32/77 (42%), Gaps = 9/77 (12%)

Query  46   MDKRDEYACSISLP--VQILIKHESNTWFGFLDDIIPSGAARRYWVNYLGLQRLSNAEQD  103
            +D  +    S SLP   +   + E   +FG L   +P  + R      LG+    +   D
Sbjct  35   LDDENTLPLSASLPKRAEPFSRRECRPFFGGL---LPEESQRLVTAQALGV----SPAND  87

Query  104  SILLEKGGIAPVGNLRI  120
              LL++ G    G L++
Sbjct  88   FALLDRLGGDVAGALQL  104


 Score = 15.0 bits (27),  Expect = 5.0
 Identities = 8/19 (42%), Positives = 10/19 (53%), Gaps = 0/19 (0%)

Query  8    ALLNANWQDIADITLLKPE  26
            ALL+    D+A    L PE
Sbjct  89   ALLDRLGGDVAGALQLLPE  107


 Score = 14.6 bits (26),  Expect = 6.6
 Identities = 3/10 (30%), Positives = 8/10 (80%), Gaps = 0/10 (0%)

Query  126  PINPESTLHL  135
            P++ ++T H+
Sbjct  172  PVSGQATTHI  181


 Score = 14.2 bits (25),  Expect = 8.8
 Identities = 6/23 (26%), Positives = 11/23 (48%), Gaps = 0/23 (0%)

Query  142  DVTDRHIDFLEYAQQMGAISGGA  164
            D +D +ID         +++G A
Sbjct  391  DTSDLYIDSARINHFADSVAGRA  413



Lambda      K        H        a         alpha
   0.321    0.139    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 159856


  Database: bcf57c2ec8c64c74d05d13c651aa5b61.SwissProt.fasta
    Posted date:  May 9, 2024  8:21 PM
  Number of letters in database: 420
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40