BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: f0d94cd657c3087543be979f10f0bee3.SwissProt.fasta
           2 sequences; 370 total letters



Query= ACIAD1802

Length=110
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri]    35.0    1e-07
P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli ...  35.0    1e-07


>P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri]
Length=185

 Score = 35.0 bits (79),  Expect = 1e-07
 Identities = 21/54 (39%), Positives = 31/54 (57%), Gaps = 1/54 (2%)

Query  33  GQLLTHLRKNILGLSQEQYATLVGISRRTLTDIEQDKGKLTQSVLDKVFKPLGL  86
           G+ L+ +R+   GLSQ + A L G++   ++ IEQDK     S L K+ K  GL
Sbjct  9   GKRLSEIRQQ-QGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGL  61


>P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli 
(strain K12)]
Length=185

 Score = 35.0 bits (79),  Expect = 1e-07
 Identities = 21/54 (39%), Positives = 31/54 (57%), Gaps = 1/54 (2%)

Query  33  GQLLTHLRKNILGLSQEQYATLVGISRRTLTDIEQDKGKLTQSVLDKVFKPLGL  86
           G+ L+ +R+   GLSQ + A L G++   ++ IEQDK     S L K+ K  GL
Sbjct  9   GKRLSEIRQQ-QGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGL  61



Lambda      K        H        a         alpha
   0.323    0.139    0.381    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 29700


  Database: f0d94cd657c3087543be979f10f0bee3.SwissProt.fasta
    Posted date:  May 8, 2024  3:22 PM
  Number of letters in database: 370
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40