BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 7b96bace89c06dcf95dcf5c5f37303fc.SwissProt.fasta
15 sequences; 4,626 total letters
Query= ACIAD1838
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
Q46855 Uncharacterized HTH-type transcriptional regulator YqhC [E... 116 2e-34
P96660 Uncharacterized HTH-type transcriptional regulator YdeC [B... 62.4 8e-15
P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aerug... 57.0 5e-13
P77379 RCS-specific HTH-type transcriptional activator RclR [Esch... 55.5 2e-12
P40331 Uncharacterized HTH-type transcriptional regulator YisR [B... 55.5 2e-12
Q9HTH5 HTH-type transcriptional regulator CdhR [Pseudomonas aerug... 54.7 4e-12
Q6DA21 HTH-type transcriptional activator RhaR [Pectobacterium at... 54.3 4e-12
C6DJR5 HTH-type transcriptional activator RhaR [Pectobacterium ca... 53.9 6e-12
O31522 HTH-type transcriptional regulator YesS [Bacillus subtilis... 54.3 7e-12
Q65Q31 HTH-type transcriptional activator RhaS [Mannheimia succin... 52.8 1e-11
P19219 Bifunctional transcriptional activator/DNA repair enzyme A... 52.0 2e-11
Q00753 Msm operon regulatory protein [Streptococcus mutans seroty... 50.8 6e-11
P09378 HTH-type transcriptional activator RhaR [Escherichia coli ... 50.8 6e-11
P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa (s... 47.8 7e-10
Q05092 XylDLEGF operon transcriptional activator 2 [Pseudomonas p... 37.0 1e-06
>Q46855 Uncharacterized HTH-type transcriptional regulator YqhC
[Escherichia coli (strain K12)]
Length=318
Score = 116 bits (290), Expect = 2e-34
Identities = 73/244 (30%), Positives = 128/244 (52%), Gaps = 9/244 (4%)
Query 2 GLGIVLQGEKQVVIGDQILTYCAGQTMLTTIDVPVVSHTHNAKNHKPFLGLMLLLDLSMI 61
G+ I+ G K I +++ Y A + +L T+ +P T+ A + P GL L +D+ +
Sbjct 69 GIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETY-ATSEVPLAGLRLNVDILQL 127
Query 62 SKVVTQMEQLNIKEKVQPSFAVQPIDYVLIE-----AVQRLVTLLDEPILLSQLSPIIQQ 116
+++ + + E QPS A I+ + A +RL+ +++ P+ L I +
Sbjct 128 QELLMDIGE---DEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIR 184
Query 117 EIMIRLLAGVNGVYLRQLIRVGSVSERVAKVVNWLKQNFVETIRLDELADRFYMSSATLR 176
EI+ +L G G L L+ + +++V+ ++ + E + +++LA MS +
Sbjct 185 EILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFH 244
Query 177 QHFREVTGMSPLQYQKHLRLQQARHLLFNQNLEVGHTADLVGYESVSQFSREYARLFGAT 236
+F+ VT SPLQY K+ RL +AR ++ + ++ A VGYES SQFSRE+ R FG T
Sbjct 245 HNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVT 304
Query 237 PLKD 240
P +D
Sbjct 305 PGED 308
>P96660 Uncharacterized HTH-type transcriptional regulator YdeC
[Bacillus subtilis (strain 168)]
Length=291
Score = 62.4 bits (150), Expect = 8e-15
Identities = 39/153 (25%), Positives = 80/153 (52%), Gaps = 1/153 (1%)
Query 90 LIEAVQRLVTLLDEPILLSQLSPIIQQEIMIRLLAGVNGVYLRQLIRVGSVSERVAKVVN 149
+++AV+++ L+ + L ++ +Q +M + L VNG L S R+ +++N
Sbjct 137 ILDAVKKINQLIQQKTSLYEIDITMQLTLMWKNLV-VNGFQLEYDQSEMIKSHRMKQMLN 195
Query 150 WLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQNLE 209
W+ ++VE I L+++A +S + ++F+ + +PL+Y R+Q++ LL +
Sbjct 196 WIHLHYVEKITLEDIAKAGQLSRSECCRYFKRMLNKTPLRYVMDYRIQKSLLLLQHPESN 255
Query 210 VGHTADLVGYESVSQFSREYARLFGATPLKDKQ 242
V + VG+ S S F ++ + TPL K+
Sbjct 256 VTEVSYQVGFNSTSYFISKFQQAMNMTPLSYKK 288
>P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=278
Score = 57.0 bits (136), Expect = 5e-13
Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 5/163 (3%)
Query 80 SFAVQPIDYVLIEAVQRLVTLLDEPILLSQLSPIIQQEIMIRLLAGVNGVYLRQLIRVGS 139
+FA P+ ++ ++ L+ P+L + +E+++ G L ++R S
Sbjct 111 AFAATPLLAGCVKGLKELLVHEHPPMLAC----LKIEELLMLFAFSPQGPLLMSVLRQLS 166
Query 140 VSERVAKVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQA 199
+ V ++ +++++++ +L + + F M T ++ F V G+SP + R+ A
Sbjct 167 -NRHVERLQLFMEKHYLNEWKLSDFSREFGMGLTTFKELFGSVYGVSPRAWISERRILYA 225
Query 200 RHLLFNQNLEVGHTADLVGYESVSQFSREYARLFGATPLKDKQ 242
LL N ++ + A G+ S S F++ Y R FG TP + +Q
Sbjct 226 HQLLLNSDMSIVDIAMEAGFSSQSYFTQSYRRRFGCTPSRSRQ 268
>P77379 RCS-specific HTH-type transcriptional activator RclR [Escherichia
coli (strain K12)]
Length=284
Score = 55.5 bits (132), Expect = 2e-12
Identities = 31/77 (40%), Positives = 43/77 (56%), Gaps = 0/77 (0%)
Query 161 LDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQNLEVGHTADLVGYE 220
++ LA +MS A+ Q FR+V+G +PL LRLQ A + + L V A+ VGY
Sbjct 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255
Query 221 SVSQFSREYARLFGATP 237
S S F + + R FG TP
Sbjct 256 SESSFHKAFVREFGCTP 272
>P40331 Uncharacterized HTH-type transcriptional regulator YisR
[Bacillus subtilis (strain 168)]
Length=287
Score = 55.5 bits (132), Expect = 2e-12
Identities = 40/168 (24%), Positives = 83/168 (49%), Gaps = 18/168 (11%)
Query 74 KEKVQ-PSFAVQPIDYVLIEAVQRLVTLLDEPILLSQLSPIIQQEIMIRLLAGVNGVYLR 132
K KVQ P F Q + ++ + + L + IL +L +Q+E
Sbjct 126 KGKVQRPQFMAQQFEKLIDYSAENSDLPLRKQILFEELMLHLQKEAF------------- 172
Query 133 QLIRVGSVSERVA-KVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQ 191
++ S ERVA + +L++++ E + +L+ + + + ++V G++P QY
Sbjct 173 ---QIPSAKERVAWEAARYLQEHYKEKTTIKDLSLALHYHQDYVSRCMQQVLGVTPAQYT 229
Query 192 KHLRLQQARHLLFNQNLEVGHTADLVGYESVSQFSREYARLFGATPLK 239
+R+ +A+ LL + N ++G A+ VG E + FS+ + ++ G +P++
Sbjct 230 NRVRMTEAKRLLSSTNDKMGVIAETVGMEDPTYFSKLFKQIEGISPIE 277
Score = 22.7 bits (47), Expect = 0.10
Identities = 6/14 (43%), Positives = 13/14 (93%), Gaps = 0/14 (0%)
Query 179 FREVTGMSPLQYQK 192
F+++ G+SP++Y+K
Sbjct 267 FKQIEGISPIEYRK 280
>Q9HTH5 HTH-type transcriptional regulator CdhR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=336
Score = 54.7 bits (130), Expect = 4e-12
Identities = 42/156 (27%), Positives = 75/156 (48%), Gaps = 3/156 (2%)
Query 91 IEAVQRLVTLLDEPILLSQLSPIIQQEIMIRLLAGVNGVYLRQLIRVGSVSERVAKVVNW 150
I+ + L+ P L Q+S +Q ++ R+ + L+ R G + ++ +V+
Sbjct 162 IDLMLDLIAQAHGPQLAVQVS---EQFVLGRIRPRQDHQRLQVATRYGVSNRKLVQVIGE 218
Query 151 LKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQNLEV 210
++++ + ELA+R ++ L + FR +P + LRL +AR LL +L V
Sbjct 219 MERHTEPPLTTLELAERIQVTRRQLERLFRVHLDDTPSNFYLGLRLDKARQLLRQTDLSV 278
Query 211 GHTADLVGYESVSQFSREYARLFGATPLKDKQAAQL 246
+ G+ES S FSR Y F A+P +D+ L
Sbjct 279 LQVSLACGFESPSYFSRSYRARFAASPSQDRAVLPL 314
>Q6DA21 HTH-type transcriptional activator RhaR [Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672)]
Length=284
Score = 54.3 bits (129), Expect = 4e-12
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 0/96 (0%)
Query 147 VVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQ 206
++N L+ + R + ++ + S+ +LR F+E TGMS Y + LRL +A LL
Sbjct 183 LMNALRASIAAPFRFEAFCEQHHFSARSLRSRFKEQTGMSVPHYLRQLRLCKAMELLRYD 242
Query 207 NLEVGHTADLVGYESVSQFSREYARLFGATPLKDKQ 242
+G A L G+E + FS + + FG +P +Q
Sbjct 243 LQTIGDVAALCGFEDSNYFSVVFHQAFGVSPSAYRQ 278
>C6DJR5 HTH-type transcriptional activator RhaR [Pectobacterium
carotovorum subsp. carotovorum (strain PC1)]
Length=284
Score = 53.9 bits (128), Expect = 6e-12
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 0/96 (0%)
Query 147 VVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQ 206
++N L+ + R + ++ + S+ +LR F+E TGMS Y + LRL +A LL
Sbjct 183 LMNALRASIAAPFRFEAFCEQHHFSARSLRSRFKEQTGMSVPHYLRQLRLCKAMELLRYD 242
Query 207 NLEVGHTADLVGYESVSQFSREYARLFGATPLKDKQ 242
+G A L G+E + FS + + FG +P +Q
Sbjct 243 LQTIGDIAALCGFEDSNYFSVVFHQAFGVSPSAYRQ 278
>O31522 HTH-type transcriptional regulator YesS [Bacillus subtilis
(strain 168)]
Length=761
Score = 54.3 bits (129), Expect = 7e-12
Identities = 27/92 (29%), Positives = 54/92 (59%), Gaps = 1/92 (1%)
Query 146 KVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFN 205
+V+ + + ++ I L+ AD M+S TL + F++VTG++ + Y +R+++A+ LL N
Sbjct 660 RVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQIRIEKAKELLVN 719
Query 206 QNLEVGHTADLVGYESVSQFSREYARLFGATP 237
N ++ ++ VGY + F+R + + G P
Sbjct 720 TNKKIHDVSEEVGYRH-NYFNRIFKKQVGMPP 750
Score = 16.9 bits (32), Expect = 7.6
Identities = 6/22 (27%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 47 KPFLGLMLLLDLSMISKVVTQM 68
KPF +ML +D + ++ +
Sbjct 183 KPFGAIMLAVDPKEMESILQSL 204
Score = 16.9 bits (32), Expect = 7.6
Identities = 8/22 (36%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 185 MSPLQYQKHLRLQQARHLLFNQ 206
+SP L L Q R +LF++
Sbjct 204 LSPYPDGSALLLDQNREVLFHE 225
Score = 16.9 bits (32), Expect = 7.6
Identities = 6/12 (50%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 151 LKQNFVETIRLD 162
L++ V+TIRL+
Sbjct 549 LEKQIVQTIRLE 560
>Q65Q31 HTH-type transcriptional activator RhaS [Mannheimia succiniciproducens
(strain MBEL55E)]
Length=268
Score = 52.8 bits (125), Expect = 1e-11
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 0/100 (0%)
Query 138 GSVSERVAKVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQ 197
G+ E+ +++ WL+ NF + I +ELA++F + TL ++ + TG +P Y LRL
Sbjct 164 GNTEEKGRQMIRWLENNFEKEIDWEELAEKFALPIRTLHRYIKSQTGHTPQNYVTKLRLA 223
Query 198 QARHLLFNQNLEVGHTADLVGYESVSQFSREYARLFGATP 237
QA + L + + A G+ S FS + + P
Sbjct 224 QAYYQLKYTEKNIINIAYDCGFNDSSYFSTCFKNEYSIAP 263
>P19219 Bifunctional transcriptional activator/DNA repair enzyme
AdaA [Bacillus subtilis (strain 168)]
Length=211
Score = 52.0 bits (123), Expect = 2e-11
Identities = 27/106 (25%), Positives = 56/106 (53%), Gaps = 0/106 (0%)
Query 141 SERVAKVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQAR 200
SE V + ++ +NF E + L+ LAD + S + + F+++ G++ ++Y + +R+ A+
Sbjct 98 SEWVDLITEYIDKNFTEKLTLESLADICHGSPYHMHRTFKKIKGITLVEYIQQVRVHAAK 157
Query 201 HLLFNQNLEVGHTADLVGYESVSQFSREYARLFGATPLKDKQAAQL 246
L N +G A VG + F + + G TP + +Q +++
Sbjct 158 KYLIQTNKAIGDIAICVGIANAPYFITLFKKKTGQTPARFRQMSKM 203
>Q00753 Msm operon regulatory protein [Streptococcus mutans serotype
c (strain ATCC 700610 / UA159)]
Length=278
Score = 50.8 bits (120), Expect = 6e-11
Identities = 26/107 (24%), Positives = 58/107 (54%), Gaps = 0/107 (0%)
Query 139 SVSERVAKVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQ 198
S V +V + + ++R++++A + +S + L + FR+ T +S +Y +R+++
Sbjct 170 STKAYVNQVKKIIHSQYGSSLRVNDIAKKLNLSRSYLYKIFRKSTNLSIKEYILQVRMKR 229
Query 199 ARHLLFNQNLEVGHTADLVGYESVSQFSREYARLFGATPLKDKQAAQ 245
+++LL N L + ++ VG+ FS+ + FG +P K ++ Q
Sbjct 230 SQYLLENPKLSIAEISNSVGFSDSLAFSKAFKNYFGKSPSKFRKEIQ 276
Score = 16.9 bits (32), Expect = 7.0
Identities = 16/54 (30%), Positives = 19/54 (35%), Gaps = 16/54 (30%)
Query 163 ELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQNLEVGHTADL 216
E DR Y T+R + Y H L+ L NQ HT DL
Sbjct 25 EKCDRGYSFGPTIRDN-----------YVIHFILEGKGKLTINQ-----HTLDL 62
>P09378 HTH-type transcriptional activator RhaR [Escherichia coli
(strain K12)]
Length=282
Score = 50.8 bits (120), Expect = 6e-11
Identities = 29/92 (32%), Positives = 46/92 (50%), Gaps = 0/92 (0%)
Query 146 KVVNWLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFN 205
K++ L + LD+ D S LRQ FR+ TGM+ QY + +R+ A++LL +
Sbjct 180 KLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQH 239
Query 206 QNLEVGHTADLVGYESVSQFSREYARLFGATP 237
L + + G+E + FS + R G TP
Sbjct 240 SRLLISDISTECGFEDSNYFSVVFTRETGMTP 271
>P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=307
Score = 47.8 bits (112), Expect = 7e-10
Identities = 23/93 (25%), Positives = 49/93 (53%), Gaps = 0/93 (0%)
Query 150 WLKQNFVETIRLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHLLFNQNLE 209
+++++ + L+ LA +S ++ +TG +P+Q+ HL+++ A LL + +
Sbjct 206 YMREHLHARLELERLAAFCNLSKFHFVSRYKAITGRTPIQHFLHLKIEYACQLLDSSDQS 265
Query 210 VGHTADLVGYESVSQFSREYARLFGATPLKDKQ 242
V VGY+ FSR ++++ G +P +Q
Sbjct 266 VARVGQAVGYDDSYYFSRLFSKVMGLSPSAYRQ 298
Score = 18.1 bits (35), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query 172 SATLRQH---FREVTGMSPLQYQKHLRLQQARHLLFNQNLEVGHT 213
SAT QH +R+ +PL +H LQ A F Q LEV H+
Sbjct 129 SATWLQHSAGYRD----TPL---RHWGLQHALLGGFEQLLEVRHS 166
>Q05092 XylDLEGF operon transcriptional activator 2 [Pseudomonas
putida]
Length=157
Score = 37.0 bits (84), Expect = 1e-06
Identities = 26/98 (27%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query 146 KVVNWLKQNFVETI---RLDELADRFYMSSATLRQHFREVTGMSPLQYQKHLRLQQARHL 202
+VV ++++N +I +L ELA MS +L F + TG +P+ Y ++ +L+ R
Sbjct 40 RVVQFIEENVKRSISLEQLAELA---LMSPRSLYTMFEKHTGTTPMNYIRNRKLECVRAC 96
Query 203 LFNQNLEVGHTADLV---GYESVSQFSREYARLFGATP 237
L N + ++ G+ + +F+ +Y FG P
Sbjct 97 LSNPTTNIRSITEVALDYGFLHLGRFAEKYRSTFGELP 134
Lambda K H a alpha
0.325 0.138 0.387 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 809064
Database: 7b96bace89c06dcf95dcf5c5f37303fc.SwissProt.fasta
Posted date: May 9, 2024 3:57 AM
Number of letters in database: 4,626
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
