BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c949c642d06f9396d225c3515f8d3b07.SwissProt.fasta
17 sequences; 4,707 total letters
Query= ACIAD1840
Length=89
Score E
Sequences producing significant alignments: (Bits) Value
Q46855 Uncharacterized HTH-type transcriptional regulator YqhC [E... 81.6 2e-23
P77379 RCS-specific HTH-type transcriptional activator RclR [Esch... 54.7 9e-14
P76138 Putative HTH-type transcriptional regulator YneL [Escheric... 46.6 5e-12
P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa (s... 49.3 8e-12
Q9HTH5 HTH-type transcriptional regulator CdhR [Pseudomonas aerug... 48.9 1e-11
P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aerug... 48.5 1e-11
A6TGB0 HTH-type transcriptional activator RhaR [Klebsiella pneumo... 47.8 3e-11
A4WG90 HTH-type transcriptional activator RhaR [Enterobacter sp. ... 46.2 9e-11
P0C2V5 Virulence regulon transcriptional activator VirF [Yersinia... 45.8 1e-10
P28808 Thermoregulatory protein LcrF [Yersinia pestis] 45.8 1e-10
Q6DA21 HTH-type transcriptional activator RhaR [Pectobacterium at... 45.8 1e-10
P09378 HTH-type transcriptional activator RhaR [Escherichia coli ... 45.4 2e-10
P40865 HTH-type transcriptional activator RhaR [Salmonella typhim... 44.3 4e-10
Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholde... 43.9 6e-10
P03022 Arabinose operon regulatory protein [Salmonella typhimuriu... 42.7 2e-09
P11765 Arabinose operon regulatory protein [Citrobacter freundii] 42.7 2e-09
P0A9E0 Arabinose operon regulatory protein [Escherichia coli (str... 42.7 2e-09
>Q46855 Uncharacterized HTH-type transcriptional regulator YqhC
[Escherichia coli (strain K12)]
Length=318
Score = 81.6 bits (200), Expect = 2e-23
Identities = 40/85 (47%), Positives = 56/85 (66%), Gaps = 0/85 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+++LA MS S F +F+ VT SPLQY K RL +AR ++++ + A AA+ VGYE
Sbjct 229 VEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYE 288
Query 61 SASQFSREYSRLFGESPQRDIQRIK 85
SASQFSRE+ R FG +P D R++
Sbjct 289 SASQFSREFKRYFGVTPGEDAARMR 313
>P77379 RCS-specific HTH-type transcriptional activator RclR [Escherichia
coli (strain K12)]
Length=284
Score = 54.7 bits (130), Expect = 9e-14
Identities = 32/86 (37%), Positives = 47/86 (55%), Gaps = 0/86 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
++ LA MS ++F Q FR+V+G +PL +LRLQ A + L A SVGY
Sbjct 196 VESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYA 255
Query 61 SASQFSREYSRLFGESPQRDIQRIKQ 86
S S F + + R FG +P +R++Q
Sbjct 256 SESSFHKAFVREFGCTPGEYRERVRQ 281
>P76138 Putative HTH-type transcriptional regulator YneL [Escherichia
coli (strain K12)]
Length=59
Score = 46.6 bits (109), Expect = 5e-12
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 0/37 (0%)
Query 25 MSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYES 61
MSPL+YQK LRL E R MLN + D AA +VGYES
Sbjct 1 MSPLRYQKWLRLNEVRRQMLNEHYDVTTAAYAVGYES 37
>P28809 MmsAB operon regulatory protein [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=307
Score = 49.3 bits (116), Expect = 8e-12
Identities = 25/86 (29%), Positives = 48/86 (56%), Gaps = 0/86 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
++ LA +S F ++ +TG +P+Q+ L+++ A L+ + + R +VGY+
Sbjct 217 LERLAAFCNLSKFHFVSRYKAITGRTPIQHFLHLKIEYACQLLDSSDQSVARVGQAVGYD 276
Query 61 SASQFSREYSRLFGESPQRDIQRIKQ 86
+ FSR +S++ G SP QR++Q
Sbjct 277 DSYYFSRLFSKVMGLSPSAYRQRVRQ 302
Score = 19.2 bits (38), Expect = 0.30
Identities = 7/15 (47%), Positives = 10/15 (67%), Gaps = 0/15 (0%)
Query 10 MSPSTFRQHFREVTG 24
+SPS +RQ R+ G
Sbjct 291 LSPSAYRQRVRQGEG 305
Score = 15.8 bits (29), Expect = 4.7
Identities = 9/24 (38%), Positives = 10/24 (42%), Gaps = 0/24 (0%)
Query 28 LQYQKQLRLQEARHLMLNHNLDAG 51
LQ+ R RH L H L G
Sbjct 133 LQHSAGYRDTPLRHWGLQHALLGG 156
>Q9HTH5 HTH-type transcriptional regulator CdhR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=336
Score = 48.9 bits (115), Expect = 1e-11
Identities = 27/78 (35%), Positives = 42/78 (54%), Gaps = 0/78 (0%)
Query 3 ELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESA 62
ELAER+ ++ + FR +P + LRL +AR L+ +L + +++ G+ES
Sbjct 231 ELAERIQVTRRQLERLFRVHLDDTPSNFYLGLRLDKARQLLRQTDLSVLQVSLACGFESP 290
Query 63 SQFSREYSRLFGESPQRD 80
S FSR Y F SP +D
Sbjct 291 SYFSRSYRARFAASPSQD 308
>P26993 HTH-type transcriptional regulator ExsA [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=278
Score = 48.5 bits (114), Expect = 1e-11
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 0/82 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+ + + M +TF++ F V G+SP + + R+ A L+LN ++ A+ G+
Sbjct 187 LSDFSREFGMGLTTFKELFGSVYGVSPRAWISERRILYAHQLLLNSDMSIVDIAMEAGFS 246
Query 61 SASQFSREYSRLFGESPQRDIQ 82
S S F++ Y R FG +P R Q
Sbjct 247 SQSYFTQSYRRRFGCTPSRSRQ 268
>A6TGB0 HTH-type transcriptional activator RhaR [Klebsiella pneumoniae
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=281
Score = 47.8 bits (112), Expect = 3e-11
Identities = 28/83 (34%), Positives = 45/83 (54%), Gaps = 0/83 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
++ E+ S RQ FR+ TGM+ Y +QLR+ A++L+ + G A+ G+E
Sbjct 194 LERFCEQEGGSERALRQQFRQQTGMTINHYLRQLRICHAQYLLQHTERLIGDIAMQCGFE 253
Query 61 SASQFSREYSRLFGESPQRDIQR 83
++ FS +SR G SP + QR
Sbjct 254 DSNYFSVVFSREIGMSPGQWRQR 276
Score = 16.2 bits (30), Expect = 3.4
Identities = 6/16 (38%), Positives = 9/16 (56%), Gaps = 0/16 (0%)
Query 5 AERVFMSPSTFRQHFR 20
+ + MSP +RQ R
Sbjct 263 SREIGMSPGQWRQRSR 278
>A4WG90 HTH-type transcriptional activator RhaR [Enterobacter
sp. (strain 638)]
Length=282
Score = 46.2 bits (108), Expect = 9e-11
Identities = 24/77 (31%), Positives = 42/77 (55%), Gaps = 0/77 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+++ E+ S RQ FR TGM+ Y +QLR+ A++L+ + L A+ G+E
Sbjct 195 LEKFCEQEQCSERALRQQFRTQTGMTVNHYLRQLRICHAQYLLQHTELMVSEVAMRCGFE 254
Query 61 SASQFSREYSRLFGESP 77
++ FS ++R G +P
Sbjct 255 DSNYFSVVFNREVGMTP 271
Score = 19.2 bits (38), Expect = 0.30
Identities = 11/36 (31%), Positives = 19/36 (53%), Gaps = 1/36 (3%)
Query 1 MDELAERV-FMSPSTFRQHFREVTGMSPLQYQKQLR 35
+ E+A R F + F F GM+P+Q++ + R
Sbjct 244 VSEVAMRCGFEDSNYFSVVFNREVGMTPVQWRHRSR 279
>P0C2V5 Virulence regulon transcriptional activator VirF [Yersinia
enterocolitica]
Length=271
Score = 45.8 bits (107), Expect = 1e-10
Identities = 24/79 (30%), Positives = 41/79 (52%), Gaps = 0/79 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+ + A M +TF++ F V G+SP + + R+ A L+LN + A+ G+
Sbjct 183 LSKFAREFGMGLTTFKELFGTVYGISPRAWISERRILYAHQLLLNGKMSIVDIAMEAGFS 242
Query 61 SASQFSREYSRLFGESPQR 79
S S F++ Y R FG +P +
Sbjct 243 SQSYFTQSYRRRFGCTPSQ 261
>P28808 Thermoregulatory protein LcrF [Yersinia pestis]
Length=271
Score = 45.8 bits (107), Expect = 1e-10
Identities = 24/79 (30%), Positives = 41/79 (52%), Gaps = 0/79 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+ + A M +TF++ F V G+SP + + R+ A L+LN + A+ G+
Sbjct 183 LSKFAREFGMGLTTFKELFGTVYGISPRAWISERRILYAHQLLLNGKMSIVDIAMEAGFS 242
Query 61 SASQFSREYSRLFGESPQR 79
S S F++ Y R FG +P +
Sbjct 243 SQSYFTQSYRRRFGCTPSQ 261
>Q6DA21 HTH-type transcriptional activator RhaR [Pectobacterium
atrosepticum (strain SCRI 1043 / ATCC BAA-672)]
Length=284
Score = 45.8 bits (107), Expect = 1e-10
Identities = 28/82 (34%), Positives = 40/82 (49%), Gaps = 0/82 (0%)
Query 2 DELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYES 61
+ E+ S + R F+E TGMS Y +QLRL +A L+ G A G+E
Sbjct 198 EAFCEQHHFSARSLRSRFKEQTGMSVPHYLRQLRLCKAMELLRYDLQTIGDVAALCGFED 257
Query 62 ASQFSREYSRLFGESPQRDIQR 83
++ FS + + FG SP QR
Sbjct 258 SNYFSVVFHQAFGVSPSAYRQR 279
Score = 18.9 bits (37), Expect = 0.41
Identities = 7/13 (54%), Positives = 9/13 (69%), Gaps = 0/13 (0%)
Query 10 MSPSTFRQHFREV 22
+SPS +RQ F V
Sbjct 271 VSPSAYRQRFLNV 283
>P09378 HTH-type transcriptional activator RhaR [Escherichia coli
(strain K12)]
Length=282
Score = 45.4 bits (106), Expect = 2e-10
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 0/79 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+D+ + S RQ FR+ TGM+ QY +Q+R+ A++L+ + L + G+E
Sbjct 195 LDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFE 254
Query 61 SASQFSREYSRLFGESPQR 79
++ FS ++R G +P +
Sbjct 255 DSNYFSVVFTRETGMTPSQ 273
>P40865 HTH-type transcriptional activator RhaR [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=282
Score = 44.3 bits (103), Expect = 4e-10
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 0/79 (0%)
Query 1 MDELAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYE 60
+D ++ S RQ FR TGM+ QY +Q+R+ A++L+ + L ++ G+E
Sbjct 195 LDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFE 254
Query 61 SASQFSREYSRLFGESPQR 79
++ FS ++R G +P +
Sbjct 255 DSNYFSVVFTRETGMTPSQ 273
>Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholderia
cepacia]
Length=318
Score = 43.9 bits (102), Expect = 6e-10
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (3%)
Query 14 TFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRA--AISVGYESASQFSREYSR 71
T R F + GMSP+QY + RL+ AR L+ + A A+ G+ +F+ Y
Sbjct 245 TLRDAFLQFRGMSPMQYLRATRLEHARELLRRSQPERRIADVALDCGFTHLGRFAIAYRE 304
Query 72 LFGESPQRDI 81
FGESP +
Sbjct 305 KFGESPSETV 314
Score = 15.0 bits (27), Expect = 8.6
Identities = 11/38 (29%), Positives = 14/38 (37%), Gaps = 0/38 (0%)
Query 5 AERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHL 42
A R+F S R M P R+Q A H+
Sbjct 13 AHRLFESRDLDETRERISRVMQPHALLPSGRMQGAAHM 50
>P03022 Arabinose operon regulatory protein [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=281
Score = 42.7 bits (99), Expect = 2e-09
Identities = 21/74 (28%), Positives = 39/74 (53%), Gaps = 0/74 (0%)
Query 4 LAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESAS 63
+A+ V +SPS FR+ G+S L +++ R+ +A+ L+ + +VG++
Sbjct 200 VAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQL 259
Query 64 QFSREYSRLFGESP 77
FSR + + G SP
Sbjct 260 YFSRVFKKCTGASP 273
>P11765 Arabinose operon regulatory protein [Citrobacter freundii]
Length=281
Score = 42.7 bits (99), Expect = 2e-09
Identities = 21/74 (28%), Positives = 39/74 (53%), Gaps = 0/74 (0%)
Query 4 LAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESAS 63
+A+ V +SPS FR+ G+S L +++ R+ +A+ L+ + +VG++
Sbjct 200 VAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQL 259
Query 64 QFSREYSRLFGESP 77
FSR + + G SP
Sbjct 260 YFSRVFKKCTGASP 273
>P0A9E0 Arabinose operon regulatory protein [Escherichia coli
(strain K12)]
Length=292
Score = 42.7 bits (99), Expect = 2e-09
Identities = 21/74 (28%), Positives = 39/74 (53%), Gaps = 0/74 (0%)
Query 4 LAERVFMSPSTFRQHFREVTGMSPLQYQKQLRLQEARHLMLNHNLDAGRAAISVGYESAS 63
+A+ V +SPS FR+ G+S L +++ R+ +A+ L+ + +VG++
Sbjct 200 VAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQL 259
Query 64 QFSREYSRLFGESP 77
FSR + + G SP
Sbjct 260 YFSRVFKKCTGASP 273
Lambda K H a alpha
0.327 0.135 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 227095
Database: c949c642d06f9396d225c3515f8d3b07.SwissProt.fasta
Posted date: May 8, 2024 3:54 PM
Number of letters in database: 4,707
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
