Comparative Genomics

ACIAD1846 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6e03808fbb2447438c9ffeea65ae30e6.TrEMBL.fasta
           11 sequences; 1,154 total letters



Query= ACIAD1846

Length=105
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6FB73 Uncharacterized protein [Acinetobacter baylyi (strain ATCC...  214     3e-78
A0A7G2SAG6 Single-stranded DNA-binding protein [Acinetobacter sp]     214     3e-78
A0A836Z423 Single-stranded DNA-binding protein [Acinetobacter nos...  192     2e-69
N9PRB1 Single-stranded DNA-binding protein [Acinetobacter colisti...  187     2e-67
A0A4Q6XK17 Single-stranded DNA-binding protein [Acinetobacter hal...  187     2e-67
N9PMQ9 Uncharacterized protein [Acinetobacter sp. CIP 64.2]           186     5e-67
A0A3S0UN62 Single-stranded DNA-binding protein [Acinetobacter sp]     186     7e-67
C0VNX3 Single-stranded DNA-binding protein [Acinetobacter sp. (st...  185     1e-66
A0A6A8B9W0 Single-stranded DNA-binding protein [Acinetobacter hae...  185     1e-66
N9PL99 Uncharacterized protein [Acinetobacter colistiniresistens]     184     3e-66
G7GH47 Uncharacterized protein [Acinetobacter sp. NBRC 100985]        184     4e-66


>Q6FB73 Uncharacterized protein [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=104

 Score = 214 bits (545),  Expect = 3e-78
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI
Sbjct  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104
            ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII
Sbjct  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104


>A0A7G2SAG6 Single-stranded DNA-binding protein [Acinetobacter 
sp]
Length=104

 Score = 214 bits (545),  Expect = 3e-78
 Identities = 104/104 (100%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI
Sbjct  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104
            ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII
Sbjct  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104


>A0A836Z423 Single-stranded DNA-binding protein [Acinetobacter 
nosocomialis]
Length=106

 Score = 192 bits (488),  Expect = 2e-69
 Identities = 89/100 (89%), Positives = 96/100 (96%), Gaps = 0/100 (0%)

Query  1   MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
           MHTSKVKILGAKAVDFKP+DGS RHYDHVALYC++PMDLSQGNAIGNGCETFNWQDSSNI
Sbjct  1   MHTSKVKILGAKAVDFKPTDGSGRHYDHVALYCQVPMDLSQGNAIGNGCETFNWQDSSNI  60

Query  61  ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQP  100
           ALLR+FKQSDFPIEADITFDMVT+GK +KYVVV V+LP P
Sbjct  61  ALLRKFKQSDFPIEADITFDMVTSGKGVKYVVVDVQLPTP  100


>N9PRB1 Single-stranded DNA-binding protein [Acinetobacter colistiniresistens]
Length=105

 Score = 187 bits (475),  Expect = 2e-67
 Identities = 88/104 (85%), Positives = 96/104 (92%), Gaps = 0/104 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTSKVKILGAKAVDFKP+DGS RHYDHVALYC+IPMDLSQGN+IGNGCETFNWQDSSNI
Sbjct  1    MHTSKVKILGAKAVDFKPTDGSGRHYDHVALYCQIPMDLSQGNSIGNGCETFNWQDSSNI  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104
            ALLRQFKQ+DFPIEA+ITFDMVT+GK +KYVV  V+LP   K I
Sbjct  61   ALLRQFKQADFPIEAEITFDMVTSGKGVKYVVCDVKLPAVPKAI  104


>A0A4Q6XK17 Single-stranded DNA-binding protein [Acinetobacter 
halotolerans]
Length=105

 Score = 187 bits (474),  Expect = 2e-67
 Identities = 89/102 (87%), Positives = 93/102 (91%), Gaps = 0/102 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTSKVKILGAKAVDFKP D S RHYDHVALYCEIPMDLSQG AIGNGCETFNWQDSSN+
Sbjct  1    MHTSKVKILGAKAVDFKPDDKSGRHYDHVALYCEIPMDLSQGTAIGNGCETFNWQDSSNM  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKK  102
            A LRQFKQ DFPIEADITFDMVTTGK++KYVVV V+LP P K
Sbjct  61   AQLRQFKQKDFPIEADITFDMVTTGKAMKYVVVDVKLPTPPK  102


>N9PMQ9 Uncharacterized protein [Acinetobacter sp. CIP 64.2]
Length=106

 Score = 186 bits (472),  Expect = 5e-67
 Identities = 86/100 (86%), Positives = 94/100 (94%), Gaps = 0/100 (0%)

Query  1   MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
           MHTSKVKILGAKAVDFKP+DGS RHYDHVALYC+IPMDLSQGN+IGNGCETFNWQDSSNI
Sbjct  1   MHTSKVKILGAKAVDFKPTDGSGRHYDHVALYCQIPMDLSQGNSIGNGCETFNWQDSSNI  60

Query  61  ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQP  100
           ALLR FKQ+DFPIEA+ITFDMVT+GK +KYVV  V+LP P
Sbjct  61  ALLRHFKQADFPIEAEITFDMVTSGKGVKYVVCDVKLPTP  100


>A0A3S0UN62 Single-stranded DNA-binding protein [Acinetobacter 
sp]
Length=104

 Score = 186 bits (471),  Expect = 7e-67
 Identities = 86/103 (83%), Positives = 95/103 (92%), Gaps = 0/103 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTS VKILGAKAVDFKP+DGS RHYDHV L+C+IPMDLSQGNAIGNGCETFNWQDS+NI
Sbjct  1    MHTSIVKILGAKAVDFKPTDGSGRHYDHVQLFCQIPMDLSQGNAIGNGCETFNWQDSANI  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKI  103
            ALLR+FKQSDFP+EA ITFDMVT+GK +KYVV  VELPQP K+
Sbjct  61   ALLRKFKQSDFPLEAKITFDMVTSGKGVKYVVCDVELPQPTKV  103


>C0VNX3 Single-stranded DNA-binding protein [Acinetobacter sp. 
(strain ATCC 27244 / 9458)]
Length=105

 Score = 185 bits (470),  Expect = 1e-66
 Identities = 88/98 (90%), Positives = 92/98 (94%), Gaps = 0/98 (0%)

Query  1   MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
           MHTSKVKILGAKAVDFKP D S RHYDHVALYCEIPMDLSQG AIGNGCETFNWQDSSN+
Sbjct  1   MHTSKVKILGAKAVDFKPDDKSGRHYDHVALYCEIPMDLSQGTAIGNGCETFNWQDSSNM  60

Query  61  ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELP  98
           ALLRQFKQ DFPIEADITFDMVTTGK++KYVVV V+LP
Sbjct  61  ALLRQFKQKDFPIEADITFDMVTTGKAMKYVVVDVKLP  98


>A0A6A8B9W0 Single-stranded DNA-binding protein [Acinetobacter 
haemolyticus]
Length=105

 Score = 185 bits (470),  Expect = 1e-66
 Identities = 88/98 (90%), Positives = 92/98 (94%), Gaps = 0/98 (0%)

Query  1   MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
           MHTSKVKILGAKAVDFKP D S RHYDHVALYCEIPMDLSQG AIGNGCETFNWQDSSN+
Sbjct  1   MHTSKVKILGAKAVDFKPDDKSGRHYDHVALYCEIPMDLSQGTAIGNGCETFNWQDSSNM  60

Query  61  ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELP  98
           ALLRQFKQ DFPIEADITFDMVTTGK++KYVVV V+LP
Sbjct  61  ALLRQFKQKDFPIEADITFDMVTTGKAMKYVVVDVKLP  98


>N9PL99 Uncharacterized protein [Acinetobacter colistiniresistens]
Length=105

 Score = 184 bits (467),  Expect = 3e-66
 Identities = 86/104 (83%), Positives = 95/104 (91%), Gaps = 0/104 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTSKVKILGAKAVDFKP+DGS RHYDHVAL+C+IPMDLSQGN IGNGCETFNWQDSSNI
Sbjct  1    MHTSKVKILGAKAVDFKPTDGSGRHYDHVALFCQIPMDLSQGNCIGNGCETFNWQDSSNI  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104
            +LLRQFKQ+DFPIEA+ITFDMVT+GK +KYVV  V+LP   K I
Sbjct  61   SLLRQFKQADFPIEAEITFDMVTSGKGVKYVVCDVKLPAVPKAI  104


>G7GH47 Uncharacterized protein [Acinetobacter sp. NBRC 100985]
Length=105

 Score = 184 bits (466),  Expect = 4e-66
 Identities = 88/104 (85%), Positives = 93/104 (89%), Gaps = 0/104 (0%)

Query  1    MHTSKVKILGAKAVDFKPSDGSNRHYDHVALYCEIPMDLSQGNAIGNGCETFNWQDSSNI  60
            MHTS VKILGAKAVDFKP D S RHYDHVALYCEIPMDLS G AIGNGCETFNWQDSSN+
Sbjct  1    MHTSTVKILGAKAVDFKPDDKSGRHYDHVALYCEIPMDLSTGMAIGNGCETFNWQDSSNM  60

Query  61   ALLRQFKQSDFPIEADITFDMVTTGKSIKYVVVSVELPQPKKII  104
            ALLRQFKQSDFPI ADITFDMVTTGK++KYVVV V+LP P K +
Sbjct  61   ALLRQFKQSDFPITADITFDMVTTGKAMKYVVVDVKLPTPPKAV  104



Lambda      K        H        a         alpha
   0.324    0.138    0.418    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 68572


  Database: 6e03808fbb2447438c9ffeea65ae30e6.TrEMBL.fasta
    Posted date:  May 30, 2024  3:51 PM
  Number of letters in database: 1,154
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40