BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d96643d71d535914cec987fcd6f47f38.SwissProt.fasta
           1 sequences; 314 total letters



Query= ACIAD1847

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P03064 Replication initiation protein [Staphylococcus aureus]         37.0    4e-07


>P03064 Replication initiation protein [Staphylococcus aureus]
Length=314

 Score = 37.0 bits (84),  Expect = 4e-07
 Identities = 39/132 (30%), Positives = 62/132 (47%), Gaps = 25/132 (19%)

Query  245  NGKGRTLCIGSRDSGKYLRLYEKGRAEGDPNDNWQRAEVEFKSIDRV---LPFDMLLAPS  301
            NGK  T   G RDS +++R+Y K +   D  D    AEV  + + RV   L  DM+   +
Sbjct  171  NGKPETKYFGVRDSNRFIRIYNKKQERKDNAD----AEVMSEHLWRVEIELKRDMVDYWN  226

Query  302  EFFIAAYPCFRDLAQHLQPERIETISKTAQINFQTAIENLKHQYG--------KYINIFK  353
            +       CF DL  H+     +TI +TA       + + + ++G        KY N+ K
Sbjct  227  D-------CFSDL--HILQPDWKTIQRTADRAIVFMLLSDEEEWGKLHRNSRTKYKNLIK  277

Query  354  EVFEPEELINLI  365
            E+  P +L +L+
Sbjct  278  EI-SPVDLTDLM  288


 Score = 16.9 bits (32),  Expect = 0.79
 Identities = 6/19 (32%), Positives = 10/19 (53%), Gaps = 0/19 (0%)

Query  315  AQHLQPERIETISKTAQIN  333
            + HL+   ++  SKT   N
Sbjct  10   SNHLENHDLDNFSKTGYSN  28


 Score = 15.0 bits (27),  Expect = 3.2
 Identities = 4/7 (57%), Positives = 7/7 (100%), Gaps = 0/7 (0%)

Query  174  NFAKSGW  180
            NF+K+G+
Sbjct  20   NFSKTGY  26



Lambda      K        H        a         alpha
   0.322    0.140    0.434    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102315


  Database: d96643d71d535914cec987fcd6f47f38.SwissProt.fasta
    Posted date:  May 9, 2024  8:03 PM
  Number of letters in database: 314
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40