BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 89e8ae797228adb8a66b1b71651fda51.SwissProt.fasta
           1 sequences; 225 total letters



Query= ACIAD1867

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O34343 UPF0700 transmembrane protein YoaK [Bacillus subtilis (str...  51.6    9e-13


>O34343 UPF0700 transmembrane protein YoaK [Bacillus subtilis 
(strain 168)]
Length=225

 Score = 51.6 bits (122),  Expect = 9e-13
 Identities = 44/199 (22%), Positives = 91/199 (46%), Gaps = 12/199 (6%)

Query  16   LLAMNAGMINVLALITVLHQSISHMTGNVSMLAMDLAKWQPNHILYLLLVIICFVVGSFY  75
            LL + AG+++V+  +++ H   ++MTGN+ +L + + K     +   L  +I F+ G   
Sbjct  13   LLCLTAGIVDVIGYLSLGHVFTANMTGNIVLLGLAIGKSIQVTVFNSLTALIGFICGVII  72

Query  76   SGFILGNSQFKLGRRYGIPLSLVSLFIFISWLLLPYFPRYG-----LLWACVAMGIQNAM  130
            +  ++G ++  L          +  FI   +  L ++  +      ++   ++MGIQ   
Sbjct  73   ATLMVGKAENTLWPSAVTKALALEAFILFVFACLSFYRAFVPVHILIILMSISMGIQTTA  132

Query  131  -----VSHYKGTIIRTTHLSGVLTDIGLSLGYKARGLPLDKRRITLHVLILLGFFLGGII  185
                 ++    T++  T L+ +L DI   L +K +      R   L  L ++ + +G II
Sbjct  133  AKKLGIAGISSTVLTGT-LASLLEDISGRLFFKKQKKTF-LRDTVLRALAIILYCVGAII  190

Query  186  VAVIYPHLHLEAFLIPTLL  204
            VA+  P  +     +P +L
Sbjct  191  VALAEPDFYHFIIWVPIVL  209



Lambda      K        H        a         alpha
   0.335    0.148    0.470    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 41209


  Database: 89e8ae797228adb8a66b1b71651fda51.SwissProt.fasta
    Posted date:  May 30, 2024  6:21 PM
  Number of letters in database: 225
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40