BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fdd03779d28951cfd6551a5f7a54ef41.SwissProt.fasta
1 sequences; 141 total letters
Query= ACIAD1874
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
P96670 Uncharacterized protein YdeM [Bacillus subtilis (strain 168)] 64.7 6e-19
>P96670 Uncharacterized protein YdeM [Bacillus subtilis (strain
168)]
Length=141
Score = 64.7 bits (156), Expect = 6e-19
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 15/131 (11%)
Query 4 LEDLKIGDRFISRDYEMTLEEIKQFASLYDPQPFHLDEEKASKHPIFKGIAASGWHTSAV 63
L++ IG F ++ +++ ++I +FA +DPQ H+DEEKASK F GI ASG T A+
Sbjct 3 LDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKASKGR-FNGIIASGIQTLAI 61
Query 64 TMRLWTECFPVAGGLIGSD-------SNLRWPRPTRPGDKIHVEVEIASITLSKTKPDRG 116
+ +LW E G G D +++ + +P P D++ VE+ + + + G
Sbjct 62 SFKLWIE-----EGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVEV--LDKQPKRNELG 114
Query 117 IVSYITQALNQ 127
I++ + NQ
Sbjct 115 ILTVLLSTYNQ 125
Lambda K H a alpha
0.324 0.139 0.430 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 16625
Database: fdd03779d28951cfd6551a5f7a54ef41.SwissProt.fasta
Posted date: May 30, 2024 8:15 AM
Number of letters in database: 141
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
