BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 08d4b06e6f9732b2661b640a979c5b23.SwissProt.fasta
19 sequences; 6,143 total letters
Query= ACIAD1875
Length=353
Score E
Sequences producing significant alignments: (Bits) Value
P72171 Ornithine utilization regulator [Pseudomonas aeruginosa (s... 152 1e-46
P68912 Uncharacterized HTH-type transcriptional regulator Mb1430 ... 100 2e-27
P9WMJ1 Uncharacterized HTH-type transcriptional regulator Rv1395 ... 100 2e-27
P9WMJ0 Uncharacterized HTH-type transcriptional regulator MT1440 ... 100 2e-27
Q9I1P2 HTH-type transcriptional regulator VqsM [Pseudomonas aerug... 94.7 3e-25
P9WMJ2 HTH-type transcriptional regulator VirS [Mycobacterium tub... 67.4 8e-16
P9WMJ3 HTH-type transcriptional regulator VirS [Mycobacterium tub... 67.4 8e-16
P05052 HTH-type transcriptional regulator AppY [Escherichia coli ... 63.2 1e-14
P76135 HTH-type transcriptional regulator YdeO [Escherichia coli ... 62.0 3e-14
Q83RF4 HTH-type transcriptional regulator YdeO [Shigella flexneri] 61.2 5e-14
Q8FHG0 HTH-type transcriptional regulator YdeO [Escherichia coli ... 61.2 5e-14
Q8X4Z9 HTH-type transcriptional regulator YdeO [Escherichia coli ... 61.2 5e-14
P0CL08 Transcriptional regulator HilD [Salmonella typhimurium (st... 61.6 6e-14
E1WAC0 Transcriptional regulator HilD [Salmonella typhimurium (st... 61.6 6e-14
O32071 Uncharacterized HTH-type transcriptional regulator YtdP [B... 62.0 1e-13
P10805 Porin thermoregulatory protein EnvY [Escherichia coli (str... 60.1 1e-13
Q02458 Urease operon transcriptional activator [Proteus mirabilis... 60.5 1e-13
Q9EYV5 HTH-type transcriptional regulator GadX [Escherichia coli ... 55.5 5e-12
P32326 Urease operon transcriptional activator [Escherichia coli] 53.1 3e-11
>P72171 Ornithine utilization regulator [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=339
Score = 152 bits (385), Expect = 1e-46
Identities = 99/328 (30%), Positives = 160/328 (49%), Gaps = 0/328 (0%)
Query 23 IPGVYGLLLLDVVSRWGYNDETLFAPFHLSSEQLADPEYRIPIHIANELVKHALKLTGES 82
+P Y LLD+V+ +G + + LF + E L P R+ N+L A L GE
Sbjct 12 VPVAYAEALLDLVAEYGVSRQALFDAARVRPEVLDSPNGRLSFLDFNQLTYSAQALCGEP 71
Query 83 TLGYHLGNQMRISIHGFIGYAIMTAHDITDALALATRFIQLRMPFLQLYFSTFGPKATLQ 142
LG LG ++ +S HG +GYA++++ ++ A+ A ++ ++ +L +A L+
Sbjct 72 ALGLVLGQRLNVSAHGILGYAVLSSANLGKAIQFALKYYRVLGLAYELELVLDDGRAELR 131
Query 143 LQCDFDLEPLRTEIILSLTIGIMSMAKALTGCDELTGEVDLDFEKPEGFNKYLEKMNLNM 202
L L + S+A L G V + P +Y E +
Sbjct 132 AVESMPLGAASVFAAEGLMATLYSIACFLVGEPLQDVRVGFAYPPPAHARRYAEVFGVAA 191
Query 203 RFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRRLAMRVRDILTHSE 262
F+QP S YL M A+P Q+ QCE L+ L + L RVR +L
Sbjct 192 EFEQPWHWLSMPSEYLERPMALANPATVQMCEQQCEALLATLDVQEGLLTRVRRLLLARP 251
Query 263 QHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIADE 322
+ +E A LH S R+L+R L++ GT++ ++D+VR R A L+ T L +IA
Sbjct 252 GDFPDLEQAARELHTSGRSLRRHLSSLGTTYQQVLDDVRKRLALQYLTTTQLPLYEIALL 311
Query 323 LGYSDVANFSRAFKRWSGRSPSNWRKDP 350
LG++D +NF RAF++W+G+ PS++R+ P
Sbjct 312 LGFNDSSNFRRAFRKWTGKLPSDYREAP 339
>P68912 Uncharacterized HTH-type transcriptional regulator Mb1430
[Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)]
Length=344
Score = 100 bits (250), Expect = 2e-27
Identities = 81/327 (25%), Positives = 147/327 (45%), Gaps = 11/327 (3%)
Query 30 LLLDVVSRWGYNDETLFAPFHLSSEQLADPEYRIPIHIANELVKHAL-KLTGESTLGYHL 88
+L +V + G + A + L DP+ + V+ L +L ++ +G +
Sbjct 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78
Query 89 GNQMRISIHGFIGYAIMTAHDITDALALATRFIQLRMPFLQLYFSTFGPKATLQLQCDFD 148
G++ ++ G G+A+M+ + + L +A R+ L + + ++L
Sbjct 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138
Query 149 LEPLRTEIILSLTIGIMS------MAKALTGCDELTGEVDLDFEKPEGFNKYLEKMNLN- 201
+R I GI++ + A D+++ E+ +D E LE + ++
Sbjct 139 PADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAEL---LRPLLELVPVHD 195
Query 202 MRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRRLAMRVRDILTHS 261
+ F + H F + + AD ++ I QC+ + RR + VR L
Sbjct 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255
Query 262 EQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIAD 321
+ + +VA L M RTL+R+LA EGTSF L+ E R A LL +++Q++
Sbjct 256 SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVST 315
Query 322 ELGYSDVANFSRAFKRWSGRSPSNWRK 348
LGY++V+ FS AFKRW G +PS + +
Sbjct 316 RLGYTEVSTFSHAFKRWYGVAPSEYSR 342
Score = 17.7 bits (34), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 28 GLLLLDVVSRWGYNDETLFA 47
GL + V +R GY + + F+
Sbjct 307 GLTVQQVSTRLGYTEVSTFS 326
>P9WMJ1 Uncharacterized HTH-type transcriptional regulator Rv1395
[Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)]
Length=344
Score = 100 bits (250), Expect = 2e-27
Identities = 81/327 (25%), Positives = 147/327 (45%), Gaps = 11/327 (3%)
Query 30 LLLDVVSRWGYNDETLFAPFHLSSEQLADPEYRIPIHIANELVKHAL-KLTGESTLGYHL 88
+L +V + G + A + L DP+ + V+ L +L ++ +G +
Sbjct 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78
Query 89 GNQMRISIHGFIGYAIMTAHDITDALALATRFIQLRMPFLQLYFSTFGPKATLQLQCDFD 148
G++ ++ G G+A+M+ + + L +A R+ L + + ++L
Sbjct 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138
Query 149 LEPLRTEIILSLTIGIMS------MAKALTGCDELTGEVDLDFEKPEGFNKYLEKMNLN- 201
+R I GI++ + A D+++ E+ +D E LE + ++
Sbjct 139 PADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAEL---LRPLLELVPVHD 195
Query 202 MRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRRLAMRVRDILTHS 261
+ F + H F + + AD ++ I QC+ + RR + VR L
Sbjct 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255
Query 262 EQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIAD 321
+ + +VA L M RTL+R+LA EGTSF L+ E R A LL +++Q++
Sbjct 256 SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVST 315
Query 322 ELGYSDVANFSRAFKRWSGRSPSNWRK 348
LGY++V+ FS AFKRW G +PS + +
Sbjct 316 RLGYTEVSTFSHAFKRWYGVAPSEYSR 342
Score = 17.7 bits (34), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 28 GLLLLDVVSRWGYNDETLFA 47
GL + V +R GY + + F+
Sbjct 307 GLTVQQVSTRLGYTEVSTFS 326
>P9WMJ0 Uncharacterized HTH-type transcriptional regulator MT1440
[Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)]
Length=344
Score = 100 bits (250), Expect = 2e-27
Identities = 81/327 (25%), Positives = 147/327 (45%), Gaps = 11/327 (3%)
Query 30 LLLDVVSRWGYNDETLFAPFHLSSEQLADPEYRIPIHIANELVKHAL-KLTGESTLGYHL 88
+L +V + G + A + L DP+ + V+ L +L ++ +G +
Sbjct 19 VLCEVANERGVPTADVLAGTAIEPADLDDPDAVVGALDEITAVRRLLARLPDDAGIGIDV 78
Query 89 GNQMRISIHGFIGYAIMTAHDITDALALATRFIQLRMPFLQLYFSTFGPKATLQLQCDFD 148
G++ ++ G G+A+M+ + + L +A R+ L + + ++L
Sbjct 79 GSRFALTHFGLFGFAVMSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHL 138
Query 149 LEPLRTEIILSLTIGIMS------MAKALTGCDELTGEVDLDFEKPEGFNKYLEKMNLN- 201
+R I GI++ + A D+++ E+ +D E LE + ++
Sbjct 139 PADVRGFFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAEL---LRPLLELVPVHD 195
Query 202 MRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRRLAMRVRDILTHS 261
+ F + H F + + AD ++ I QC+ + RR + VR L
Sbjct 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255
Query 262 EQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDYSLEQIAD 321
+ + +VA L M RTL+R+LA EGTSF L+ E R A LL +++Q++
Sbjct 256 SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVST 315
Query 322 ELGYSDVANFSRAFKRWSGRSPSNWRK 348
LGY++V+ FS AFKRW G +PS + +
Sbjct 316 RLGYTEVSTFSHAFKRWYGVAPSEYSR 342
Score = 17.7 bits (34), Expect = 8.1
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 28 GLLLLDVVSRWGYNDETLFA 47
GL + V +R GY + + F+
Sbjct 307 GLTVQQVSTRLGYTEVSTFS 326
>Q9I1P2 HTH-type transcriptional regulator VqsM [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=325
Score = 94.7 bits (234), Expect = 3e-25
Identities = 70/273 (26%), Positives = 129/273 (47%), Gaps = 14/273 (5%)
Query 85 GYHLGNQMRISIHGFIGYAIMTAHDITDALALATRFIQLRMPFLQLYFSTFGPKAT---- 140
G +LG IS +G IG A++ A ++ D L + +++L + G K
Sbjct 53 GLNLGTYYHISDYGVIGLALLCAENVGDILKVIRAYVKL----FNRDIANVGVKPRENYE 108
Query 141 LQLQCDFDLEPLRTEIILSLTIGIMSMAKALTGCDELTGEVDLDF--EKPEGFNKYLEK- 197
+++ + +P + + +++ A D L + + G +K + +
Sbjct 109 VEIHISVNFKPEWNDASRQFHVNVIASATYKLIMDLLGNDFPISALTVPVHGADKTIYEG 168
Query 198 -MNLNMRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRR--LAMRV 254
+L ++ + +I SF H L + A+P Q A+ +AL E L R+
Sbjct 169 FFSLPVKHEGNDIIFSFPAHQLNRTLATANPAVFQSALTMAGESFNALLEVEMGGLRQRI 228
Query 255 RDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTDY 314
L Y S+ A L M++RT++R+LA EG ++ +VD+ R A +LL +
Sbjct 229 ELFLDSIPDQYPSLVTTAKYLRMNERTVRRRLADEGCTYRQIVDKARKERAIALLLNSSI 288
Query 315 SLEQIADELGYSDVANFSRAFKRWSGRSPSNWR 347
+++I+D LGYS+ A+F AF+RW+G+S + +R
Sbjct 289 PVDRISDILGYSETASFRHAFRRWTGQSTTEFR 321
>P9WMJ2 HTH-type transcriptional regulator VirS [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=340
Score = 67.4 bits (163), Expect = 8e-16
Identities = 50/158 (32%), Positives = 76/158 (48%), Gaps = 9/158 (6%)
Query 194 YLEKMNLNMRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETEL----SALGERRR 249
Y E + +RF + D G + +ADP +IA E++ + L ER
Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSER-- 237
Query 250 LAMRVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLL 309
+ R +L + S E +AD L M RTL+R+LAAEG L++ R A L
Sbjct 238 VVGLARRLLPTGQ---CSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYL 294
Query 310 SRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWR 347
++ L QIA LGYS+ + +R+ +RW G +P +R
Sbjct 295 AQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
>P9WMJ3 HTH-type transcriptional regulator VirS [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=340
Score = 67.4 bits (163), Expect = 8e-16
Identities = 50/158 (32%), Positives = 76/158 (48%), Gaps = 9/158 (6%)
Query 194 YLEKMNLNMRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETEL----SALGERRR 249
Y E + +RF + D G + +ADP +IA E++ + L ER
Sbjct 180 YREALGCTVRFGRTWCGFEVDHRLAGRPIDHADPETKRIATKYLESQYLPSDATLSER-- 237
Query 250 LAMRVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLL 309
+ R +L + S E +AD L M RTL+R+LAAEG L++ R A L
Sbjct 238 VVGLARRLLPTGQ---CSAEAIADQLDMHPRTLQRRLAAEGLRCHDLIERERRAQAARYL 294
Query 310 SRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWR 347
++ L QIA LGYS+ + +R+ +RW G +P +R
Sbjct 295 AQPGLYLSQIAVLLGYSEQSALNRSCRRWFGMTPRQYR 332
>P05052 HTH-type transcriptional regulator AppY [Escherichia coli
(strain K12)]
Length=249
Score = 63.2 bits (152), Expect = 1e-14
Identities = 27/94 (29%), Positives = 60/94 (64%), Gaps = 0/94 (0%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
++ I++ + + ++++A+L++ S+ +K++L EGTSF+ ++ + R R+A L++
Sbjct 140 KITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSN 199
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNW 346
YS+ +A + GY+ + F AFK + G +PS++
Sbjct 200 SYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHY 233
>P76135 HTH-type transcriptional regulator YdeO [Escherichia coli
(strain K12)]
Length=253
Score = 62.0 bits (149), Expect = 3e-14
Identities = 31/97 (32%), Positives = 60/97 (62%), Gaps = 1/97 (1%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
+VR+I+ H ++++ D L++S+ LK++L E T+FS ++ + R +HA +L+ R
Sbjct 138 KVRNIVNMKPAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 349
+ S+ +IA++ GY+ + F AF++ G SP K+
Sbjct 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233
>Q83RF4 HTH-type transcriptional regulator YdeO [Shigella flexneri]
Length=253
Score = 61.2 bits (147), Expect = 5e-14
Identities = 31/97 (32%), Positives = 60/97 (62%), Gaps = 1/97 (1%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
+VR+I+ H ++++ D L++S+ LK++L E T+FS ++ + R +HA +L+ R
Sbjct 138 KVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 349
+ S+ +IA++ GY+ + F AF++ G SP K+
Sbjct 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233
>Q8FHG0 HTH-type transcriptional regulator YdeO [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=253
Score = 61.2 bits (147), Expect = 5e-14
Identities = 31/97 (32%), Positives = 60/97 (62%), Gaps = 1/97 (1%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
+VR+I+ H ++++ D L++S+ LK++L E T+FS ++ + R +HA +L+ R
Sbjct 138 KVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 349
+ S+ +IA++ GY+ + F AF++ G SP K+
Sbjct 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233
>Q8X4Z9 HTH-type transcriptional regulator YdeO [Escherichia coli
O157:H7]
Length=253
Score = 61.2 bits (147), Expect = 5e-14
Identities = 31/97 (32%), Positives = 60/97 (62%), Gaps = 1/97 (1%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
+VR+I+ H ++++ D L++S+ LK++L E T+FS ++ + R +HA +L+ R
Sbjct 138 KVRNIVNMKLAHPWKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLI-RV 196
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKD 349
+ S+ +IA++ GY+ + F AF++ G SP K+
Sbjct 197 EGSVNKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKE 233
>P0CL08 Transcriptional regulator HilD [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=309
Score = 61.6 bits (148), Expect = 6e-14
Identities = 35/99 (35%), Positives = 55/99 (56%), Gaps = 0/99 (0%)
Query 250 LAMRVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLL 309
L RV +I++ S + +VAD + MS TLKR+LA EGTSFS + R A LL
Sbjct 207 LKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLL 266
Query 310 SRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 348
++++ +A + GY + F + FK++ +PS + K
Sbjct 267 RIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305
>E1WAC0 Transcriptional regulator HilD [Salmonella typhimurium
(strain SL1344)]
Length=309
Score = 61.6 bits (148), Expect = 6e-14
Identities = 35/99 (35%), Positives = 55/99 (56%), Gaps = 0/99 (0%)
Query 250 LAMRVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLL 309
L RV +I++ S + +VAD + MS TLKR+LA EGTSFS + R A LL
Sbjct 207 LKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLL 266
Query 310 SRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 348
++++ +A + GY + F + FK++ +PS + K
Sbjct 267 RIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTPSTFIK 305
>O32071 Uncharacterized HTH-type transcriptional regulator YtdP
[Bacillus subtilis (strain 168)]
Length=772
Score = 62.0 bits (149), Expect = 1e-13
Identities = 41/148 (28%), Positives = 73/148 (49%), Gaps = 8/148 (5%)
Query 202 MRFDQPHLISSFDKHYLGLKMVNADPIASQIAINQCETELSALGERRRLAMRVRDILTHS 261
M +DQ + +F+ LK DP+ ++ A + + ++ + I+ H
Sbjct 627 MLYDQIFELKTFEDTENWLKNEFIDPMTDKV-------NARADAQYKNISDNIIHIIHHE 679
Query 262 EQHYLSIENVADLLHMSDRTLKRQLAAE-GTSFSTLVDEVRYRHATSLLSRTDYSLEQIA 320
+ L+++ +A LH + L E G SFS V R+ A S L+ TD +++ IA
Sbjct 680 FESELTLDEIARRLHYNPNYLSSIFKKEMGISFSEYVSSYRHHMAKSWLAETDMAVKDIA 739
Query 321 DELGYSDVANFSRAFKRWSGRSPSNWRK 348
++L Y + NF R+FK+ G +P N+R+
Sbjct 740 EKLKYKNSQNFIRSFKKLEGITPGNYRQ 767
Score = 19.2 bits (38), Expect = 2.9
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 4/59 (7%)
Query 235 NQCETELSALGERRRLAMRVRDILTHSEQHYLS----IENVADLLHMSDRTLKRQLAAE 289
N E + L + ++ + + HS HY+S + +++ LH + Q+ E
Sbjct 46 NVSEEKFDTLQQTQQSIEHILKTVDHSLTHYVSSPPLLRTLSEPLHSDQFQIYNQVNQE 104
>P10805 Porin thermoregulatory protein EnvY [Escherichia coli
(strain K12)]
Length=253
Score = 60.1 bits (144), Expect = 1e-13
Identities = 36/101 (36%), Positives = 54/101 (53%), Gaps = 4/101 (4%)
Query 250 LAMRVRD----ILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHA 305
L VRD I+ QHY ++ VA L +S LK++L E TS+S +V E R R+A
Sbjct 143 LRSSVRDSVCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYA 202
Query 306 TSLLSRTDYSLEQIADELGYSDVANFSRAFKRWSGRSPSNW 346
+L + ++ Q+A GYS + F FK + G +P N+
Sbjct 203 VQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNY 243
>Q02458 Urease operon transcriptional activator [Proteus mirabilis
(strain HI4320)]
Length=293
Score = 60.5 bits (145), Expect = 1e-13
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 0/94 (0%)
Query 254 VRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTD 313
+ ++T Q +E+VA L+ + TL+R L+ EG SF L+ +VR A + L+ ++
Sbjct 173 ITHLITQDPQRKWHLEDVAKTLYTTPSTLRRHLSKEGVSFCQLLLDVRMPIALNYLTFSN 232
Query 314 YSLEQIADELGYSDVANFSRAFKRWSGRSPSNWR 347
YS+ QI+ G+ A F AFKR G +PS +R
Sbjct 233 YSVFQISHRCGFGSNAYFCDAFKRKYGMTPSQFR 266
>Q9EYV5 HTH-type transcriptional regulator GadX [Escherichia coli
O127:H6 (strain E2348/69 / EPEC)]
Length=274
Score = 55.5 bits (132), Expect = 5e-12
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 0/96 (0%)
Query 253 RVRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRT 312
RV ++ ++ H ++ +A L MS LK++L EGTS+S L+ E R + A L+
Sbjct 146 RVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEGTSYSQLLTECRMQRALQLIVIY 205
Query 313 DYSLEQIADELGYSDVANFSRAFKRWSGRSPSNWRK 348
S++++A GY V+ F F+ + G +P+ +++
Sbjct 206 GVSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQE 241
Score = 18.1 bits (35), Expect = 5.9
Identities = 9/23 (39%), Positives = 16/23 (70%), Gaps = 2/23 (9%)
Query 215 KHYLGLKMVNADPIASQIAINQC 237
+++ G +V AD ASQI +++C
Sbjct 27 RYFNGGDLVFAD--ASQIQVDKC 47
>P32326 Urease operon transcriptional activator [Escherichia coli]
Length=296
Score = 53.1 bits (126), Expect = 3e-11
Identities = 31/94 (33%), Positives = 50/94 (53%), Gaps = 0/94 (0%)
Query 254 VRDILTHSEQHYLSIENVADLLHMSDRTLKRQLAAEGTSFSTLVDEVRYRHATSLLSRTD 313
+ ++T Q +++VA L + TL+R L EG SF L+ +VR A + L+ ++
Sbjct 173 ITHLITQEPQKKWHLDDVAKALFTTPSTLRRHLNREGVSFRQLLLDVRMGMALNYLTFSN 232
Query 314 YSLEQIADELGYSDVANFSRAFKRWSGRSPSNWR 347
YS+ QI+ G+ A F FKR +PS +R
Sbjct 233 YSVFQISHRCGFGSNAYFCDVFKRKYNMTPSQFR 266
Lambda K H a alpha
0.323 0.137 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1595455
Database: 08d4b06e6f9732b2661b640a979c5b23.SwissProt.fasta
Posted date: May 20, 2024 6:13 AM
Number of letters in database: 6,143
Number of sequences in database: 19
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
