BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d489551ddb465c900cbccfa80269deac.SwissProt.fasta
           7 sequences; 1,853 total letters



Query= ACIAD1913

Length=202
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P9WGM2 Transcriptional regulatory protein PdtaR [Mycobacterium tu...  72.4    1e-19
P9WGM3 Transcriptional regulatory protein PdtaR [Mycobacterium tu...  72.4    1e-19
Q48468 Nitrate regulatory protein [Klebsiella oxytoca]                48.9    8e-11
P37478 Transcriptional regulatory protein WalR [Bacillus subtilis...  42.7    6e-09
P52688 Transcriptional regulatory protein CitB [Klebsiella pneumo...  38.9    1e-07
O24973 Transcriptional regulatory protein ArsR [Helicobacter pylo...  37.7    3e-07
Q3A5A8 Protein-glutamate methylesterase/protein-glutamine glutami...  35.4    2e-06


>P9WGM2 Transcriptional regulatory protein PdtaR [Mycobacterium 
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=205

 Score = 72.4 bits (176),  Expect = 1e-19
 Identities = 47/184 (26%), Positives = 99/184 (54%), Gaps = 5/184 (3%)

Query  5    KIALIDDDLERAEFIRQDLRAHDFDVVACMTLDHLNVLKLEKL-QADVILLDMDHPHRDI  63
            ++ + +D+      + + LR   +++V     D    ++L +L + D++++D+  P RD 
Sbjct  15   RVLIAEDEALIRMDLAEMLREEGYEIVG-EAGDGQEAVELAELHKPDLVIMDVKMPRRDG  73

Query  64   IESC---VSRFDLPTVLFTKNTHKDTIKQAIAAGVTAYIVDGIDPSRLDTILEISIEQYK  120
            I++     S+   P V+ T  + +D +++A  AG  AY+V     S L   +E+++ +++
Sbjct  74   IDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  133

Query  121  KHKQLESDLKETKIKLADRKDIEKAKVLLMQLHHLSEDTAFQLLRKNAMSHRITMGEMAR  180
            +   LE ++     +L  RK +E+AK LL   H ++E  AF+ +++ AM  R TM  +A 
Sbjct  134  EITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAE  193

Query  181  RLID  184
             +++
Sbjct  194  VVLE  197


>P9WGM3 Transcriptional regulatory protein PdtaR [Mycobacterium 
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=205

 Score = 72.4 bits (176),  Expect = 1e-19
 Identities = 47/184 (26%), Positives = 99/184 (54%), Gaps = 5/184 (3%)

Query  5    KIALIDDDLERAEFIRQDLRAHDFDVVACMTLDHLNVLKLEKL-QADVILLDMDHPHRDI  63
            ++ + +D+      + + LR   +++V     D    ++L +L + D++++D+  P RD 
Sbjct  15   RVLIAEDEALIRMDLAEMLREEGYEIVG-EAGDGQEAVELAELHKPDLVIMDVKMPRRDG  73

Query  64   IESC---VSRFDLPTVLFTKNTHKDTIKQAIAAGVTAYIVDGIDPSRLDTILEISIEQYK  120
            I++     S+   P V+ T  + +D +++A  AG  AY+V     S L   +E+++ +++
Sbjct  74   IDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  133

Query  121  KHKQLESDLKETKIKLADRKDIEKAKVLLMQLHHLSEDTAFQLLRKNAMSHRITMGEMAR  180
            +   LE ++     +L  RK +E+AK LL   H ++E  AF+ +++ AM  R TM  +A 
Sbjct  134  EITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAE  193

Query  181  RLID  184
             +++
Sbjct  194  VVLE  197


>Q48468 Nitrate regulatory protein [Klebsiella oxytoca]
Length=396

 Score = 48.9 bits (115),  Expect = 8e-11
 Identities = 33/83 (40%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query  107  RLDT-ILEISIEQYKKHKQLESDLKETKIKLADRKDIEKAKVLLMQLHHLSEDTAFQLLR  165
            RLD  +L +  +Q  + +QL   L   K  L +RK IEKAK +LM    + E+ A+Q LR
Sbjct  307  RLDKQLLPLVRQQAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALR  366

Query  166  KNAMSHRITMGEMARRLIDAQQL  188
            K AM     M E+AR L+  + L
Sbjct  367  KMAMDKNQRMVEIARALLTVKAL  389


>P37478 Transcriptional regulatory protein WalR [Bacillus subtilis 
(strain 168)]
Length=235

 Score = 42.7 bits (99),  Expect = 6e-09
 Identities = 25/78 (32%), Positives = 46/78 (59%), Gaps = 4/78 (5%)

Query  5   KIALIDDDLERAEFIRQDLRAHDFDVVACMTLDHLNVLKLEKLQADVILLDMDHPHRDII  64
           KI ++DD+   A+ +  +LR   ++V  C    +  V  +E+LQ D+ILLD+  P++D +
Sbjct  4   KILVVDDEKPIADILEFNLRKEGYEV-HCAHDGNEAVEMVEELQPDLILLDIMLPNKDGV  62

Query  65  ESC---VSRFDLPTVLFT  79
           E C     ++D+P ++ T
Sbjct  63  EVCREVRKKYDMPIIMLT  80


>P52688 Transcriptional regulatory protein CitB [Klebsiella pneumoniae]
Length=234

 Score = 38.9 bits (89),  Expect = 1e-07
 Identities = 51/216 (24%), Positives = 87/216 (40%), Gaps = 20/216 (9%)

Query  1    MSKLKIALIDDDLERAEFIRQDLRAH-DFDVVACMTLDHLNVLKLEKLQADVILLDMDHP  59
            M  +   +++D+   AE +  +++    FDV+           +L   Q  +ILLD   P
Sbjct  1    MDSITTLIVEDEPMLAEILVDNIKQFPQFDVIGIADKLESARKQLRLYQPQLILLDNFLP  60

Query  60   HR---DIIESCVSRFDLPTVLF-TKNTHKDTIKQAIAAGVTAYIVDGIDPSRLDTILE--  113
                 D+I   VS      ++F T + H +TI +A+  GV  Y++  +   RL   LE  
Sbjct  61   DGKGIDLIRHAVSTHYKGRIIFITADNHMETISEALRLGVFDYLIKPVHYQRLQHTLERF  120

Query  114  ----ISIEQYKKHKQLESDLKETKIKLADRKDIEKAKVLLMQLHHLSEDTAFQLLRKNAM  169
                 S+   ++  QL  D       +  R+  E A   L  +   +     QL     +
Sbjct  121  ARYRSSLRSSEQASQLHVD---ALFNIQAREQTEPASAPLRGIDESTFQRVLQLFADPTV  177

Query  170  SHRITMGEMARRL----IDAQQLLLNPLKEDSHESD  201
             H  T   +AR L      A++ L   +K D  E++
Sbjct  178  VH--TADSLARILGSSKTTARRYLEQGVKNDFLEAE  211


>O24973 Transcriptional regulatory protein ArsR [Helicobacter 
pylori (strain ATCC 700392 / 26695)]
Length=225

 Score = 37.7 bits (86),  Expect = 3e-07
 Identities = 26/125 (21%), Positives = 58/125 (46%), Gaps = 4/125 (3%)

Query  4    LKIALIDDDLERAEFIRQDLRAHDFDVVACMTLDHLNVLKLEKLQADVILLDMDHPHRDI  63
            +++ +I+DD+E AEF+ + L  H   V       +  +        D++LLD+  P+ D 
Sbjct  2    IEVLMIEDDIELAEFLSEFLLQHGIHVTN-YDEPYTGISAANTQNYDLLLLDLTLPNLDG  60

Query  64   IESC---VSRFDLPTVLFTKNTHKDTIKQAIAAGVTAYIVDGIDPSRLDTILEISIEQYK  120
            +E C     +  +P ++ +  +  +   +A+  G   Y+    DP  L   ++  + +  
Sbjct  61   LEVCRRISKQKHIPIIISSARSDVEDKIKALDYGADDYLPKPYDPKELLARIQSLLRRSH  120

Query  121  KHKQL  125
            K +++
Sbjct  121  KKEEV  125


>Q3A5A8 Protein-glutamate methylesterase/protein-glutamine glutaminase 
[Syntrophotalea carbinolica (strain DSM 2380 / NBRC 
103641 / GraBd1)]
Length=353

 Score = 35.4 bits (80),  Expect = 2e-06
 Identities = 35/148 (24%), Positives = 68/148 (46%), Gaps = 15/148 (10%)

Query  3    KLKIALIDDDLERAEFIRQDLRAH-DFDVVACMTLDHLNVLKLEKLQADVILLDMDHPHR  61
            K+++ +IDD     + + + L      +VV      ++   K+ KLQ DV+ LD++ P  
Sbjct  4    KIRVLVIDDSALVRQILSKGLALDPSIEVVGTAGDPYIARDKIVKLQPDVLTLDVEMPRM  63

Query  62   ---DIIESCVSRFDLPTVLFTKNTHKDTIKQAIAAGVTAYIVDGIDPSRLDTILEISIEQ  118
               D +   + ++ LP V+ +  T K   KQ          +D +D   +D + + + + 
Sbjct  64   DGVDFLRRLMPQYPLPVVMVSSLTQKG--KQ--------ITLDSLDAGAVDFVSKPTSDI  113

Query  119  YKKHKQLESDLKETKIKLADRKDIEKAK  146
             +  K + S+L   K+KLA   ++   K
Sbjct  114  ARGLKAMLSELC-AKVKLASTANVSHWK  140



Lambda      K        H        a         alpha
   0.324    0.138    0.383    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 265766


  Database: d489551ddb465c900cbccfa80269deac.SwissProt.fasta
    Posted date:  May 9, 2024  9:13 PM
  Number of letters in database: 1,853
  Number of sequences in database:  7



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40