BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: fb910a4ee0c705ff3c7d4ec348053044.SwissProt.fasta
           1 sequences; 178 total letters



Query= ACIAD1926

Length=86
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B4RCD1 Small ribosomal subunit protein bS16 [Phenylobacterium zuc...  31.6    4e-07


>B4RCD1 Small ribosomal subunit protein bS16 [Phenylobacterium 
zucineum (strain HLK1)]
Length=178

 Score = 31.6 bits (70),  Expect = 4e-07
 Identities = 26/73 (36%), Positives = 37/73 (51%), Gaps = 12/73 (16%)

Query  10   ACSKKNDAPASEQGQTAPADEKITPEQQAAIDALDKPVMNEKNTDVPESVANVAADPATP  69
            A ++   APA E    APA+E   P ++AA +A  +    E+        A  AA+ A P
Sbjct  116  AAAEAAAAPAEE----APAEE--APAEEAAAEAAPEAAAAEE-----APAAEAAAEEAAP  164

Query  70   ASENEAPA-GQNQ  81
            A+E  APA G+ Q
Sbjct  165  AAEEAAPAEGEEQ  177


 Score = 28.5 bits (62),  Expect = 5e-06
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (5%)

Query  3    IAPLALTACSKKNDAPASEQGQTAP--ADEKITPEQQAAIDALDKPVMNEKNTDVPESVA  60
            ++ L +T  +  N+    E GQ A   A+E+   E   A  A +      +     E+ A
Sbjct  76   LSKLGITQWTAGNNPKKGEPGQKAKERAEERAQREADRAAAAAEAAAAPAEEAPAEEAPA  135

Query  61   NVAADPATP--ASENEAPAGQ  79
              AA  A P  A+  EAPA +
Sbjct  136  EEAAAEAAPEAAAAEEAPAAE  156



Lambda      K        H        a         alpha
   0.309    0.123    0.343    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 12045


  Database: fb910a4ee0c705ff3c7d4ec348053044.SwissProt.fasta
    Posted date:  May 20, 2024  2:20 AM
  Number of letters in database: 178
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40