BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: cb665826cad76e02e5bf3f1ee4fda019.SwissProt.fasta
           1 sequences; 1,941 total letters



Query= ACIAD1929

Length=128
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q54JE1 Integrin beta-like protein B [Dictyostelium discoideum]        35.4    9e-07


>Q54JE1 Integrin beta-like protein B [Dictyostelium discoideum]
Length=1941

 Score = 35.4 bits (80),  Expect = 9e-07
 Identities = 21/64 (33%), Positives = 31/64 (48%), Gaps = 12/64 (19%)

Query  40   TNDLGQHTVCA------EMTSEFLSFSQKIGNDLTTPLPEMGFPGLKPGDYWCICVTRWV  93
            T+ +G + + A       +TSE  SF+ +I        PE G  G+K GD  C+C+  W 
Sbjct  354  TSSIGSYVISALCKDSSGLTSEVRSFTIRIEK------PECGNGGIKGGDGKCVCIGNWD  407

Query  94   EAYQ  97
              YQ
Sbjct  408  TIYQ  411


 Score = 16.2 bits (30),  Expect = 2.5
 Identities = 7/22 (32%), Positives = 14/22 (64%), Gaps = 3/22 (14%)

Query  53    TSEFLSFSQKIGNDLTTPLPEM  74
             TS+  +F+   G+D+ TP  ++
Sbjct  1361  TSKAFTFN---GDDIETPTSDL  1379


 Score = 15.4 bits (28),  Expect = 4.5
 Identities = 8/30 (27%), Positives = 13/30 (43%), Gaps = 0/30 (0%)

Query  43   LGQHTVCAEMTSEFLSFSQKIGNDLTTPLP  72
            L Q    +   S+F   + KI   ++ P P
Sbjct  882  LNQQVGISLSASDFEDVASKIAIFVSNPSP  911


 Score = 14.6 bits (26),  Expect = 8.0
 Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 0/25 (0%)

Query  82    GDYWCICVTRWVEAYQAGQAPNVKI  106
             GD      T  V      Q P +K+
Sbjct  1564  GDLVSKIYTVTVNVIHVNQPPTIKL  1588



Lambda      K        H        a         alpha
   0.327    0.141    0.478    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 181260


  Database: cb665826cad76e02e5bf3f1ee4fda019.SwissProt.fasta
    Posted date:  May 29, 2024  1:39 PM
  Number of letters in database: 1,941
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40