BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 7fda86f51bd713f22cc5194ac6447191.SwissProt.fasta
18 sequences; 5,791 total letters
Query= ACIAD1940
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
Q58665 Probable branched-chain amino acid transport permease prot... 118 2e-34
P21627 High-affinity branched-chain amino acid transport system p... 102 8e-29
P0A2J2 High-affinity branched-chain amino acid transport system p... 102 1e-28
P0A2J1 High-affinity branched-chain amino acid transport system p... 102 1e-28
P0AEX8 High-affinity branched-chain amino acid transport system p... 101 3e-28
P0AEX7 High-affinity branched-chain amino acid transport system p... 101 3e-28
P77315 Probable ABC transporter permease protein YphD [Escherichi... 67.8 3e-16
P0AGI2 Ribose import permease protein RbsC [Escherichia coli O6:H... 59.3 2e-13
P0AGI3 Ribose import permease protein RbsC [Escherichia coli O157... 59.3 2e-13
P0AGI1 Ribose import permease protein RbsC [Escherichia coli (str... 59.3 2e-13
Q9F9B1 Fructose import permease protein FrcC [Rhizobium meliloti] 58.5 4e-13
P36948 Ribose import permease protein RbsC [Bacillus subtilis (st... 57.0 1e-12
P44885 Galactose/methyl galactoside import permease protein MglC ... 57.0 1e-12
P44736 Ribose import permease protein RbsC [Haemophilus influenza... 56.2 2e-12
A2RKA5 Nucleoside ABC transporter permease protein NupC [Lactococ... 55.8 3e-12
Q2PBM2 Autoinducer 2 import system permease protein LsrC [Photorh... 54.3 1e-11
Q8ZKQ2 Autoinducer 2 import system permease protein LsrD [Salmone... 53.1 2e-11
O05255 Guanosine ABC transporter permease protein NupQ [Bacillus ... 52.4 4e-11
>Q58665 Probable branched-chain amino acid transport permease
protein LivH [Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)]
Length=315
Score = 118 bits (295), Expect = 2e-34
Identities = 96/294 (33%), Positives = 149/294 (51%), Gaps = 19/294 (6%)
Query 7 VLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQGALVL---FSALTFVNLTEHGVPFIVA 63
+L G + + L+A+G L Y + V NFAQG+ + + ALT + L G+ ++
Sbjct 14 ILEGAIIYSNLLVLLALGLTLTYITTNVPNFAQGSYAIVGSYVALTLLKL--FGICPYLS 71
Query 64 FAVTLFIIFIVVLLIDALVLKHLVNR--SVITLFMATLGLSYVLEGTAQAVWGTQVHGLD 121
V LF++ +V LI L LK L+ R SV L +ATL + +L G A +++
Sbjct 72 LPV-LFVVGAIVGLITYLALKPLIKRNASVEILMIATLAIDLILLGVIGAY--SEILSQI 128
Query 122 LGISDVPIDFYGIHLSKFDLVATLIAGSLVIILSF-----LFTKTRFGISLRAVADDPLA 176
+G + F + S F L + V+IL L KT+FGI+LRA ++P
Sbjct 129 VGSTQAKFVFANLDFSLFGFKGILFVSTFVVILLLIGLYLLLYKTKFGIALRASMENPSL 188
Query 177 SQSVGIRLNYIWILVWSVAGLVALVAG-LLWGARLGVQFSLSLVVLKALPVLIIGGFTSI 235
+Q++GI + + W ++G +A VAG LL + V + L+++ I+GG I
Sbjct 189 AQTMGIDVEKTRLFSWILSGALAGVAGGLLPFMQEIVPATGDLIIISIFAASIVGGLRHI 248
Query 236 TGAIVGGLIIGASEKLAEIYLGSLIGSGIENW---FPYLIAILFLLIRPTGLFG 286
+GA++GG IIG SE L YL S G+G + +I I LLI P G+ G
Sbjct 249 SGALIGGYIIGISESLITYYLASAFGTGFLVYGKVISLIIMIATLLIAPYGITG 302
>P21627 High-affinity branched-chain amino acid transport system
permease protein BraD [Pseudomonas aeruginosa (strain ATCC
15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C
/ PRS 101 / PAO1)]
Length=307
Score = 102 bits (255), Expect = 8e-29
Identities = 76/308 (25%), Positives = 147/308 (48%), Gaps = 25/308 (8%)
Query 4 FLEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQG---------ALVLFSALTFVNLT 54
+L+ L+ G G Y+L+AIG+ ++Y G+ NFA G A + + L + L
Sbjct 7 YLQQLVNGLTVGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYIAFIAITLLAMMGLD 66
Query 55 EHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVWG 114
+ + AFA ++ + I+ + + L + + ++ +G+S L+
Sbjct 67 SVPLMMLAAFAASIIVTSAFGYSIERVAYRPLRGGNRLIPLISAIGMSIFLQNAVMLSQD 126
Query 115 TQVHGLDLGISDVPIDFY-------GIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISL 167
++ + + +P +F G+ +S ++ ++ ++ L+ +++R G +
Sbjct 127 SKEKAIP---TLLPGNFVFGESSMNGVVISYMQILIFVVTFLVMFGLTLFISRSRLGRAC 183
Query 168 RAVADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV--QFSLSLVVLKALP 225
RA A+D + +GI N I L + + +A VA +L G + GV L +KA
Sbjct 184 RACAEDLKMTNLLGINSNNIIALTFVIGAALAAVAAVLLGMQYGVINPGIGFLAGIKAFT 243
Query 226 VLIIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLLIRPTGLF 285
++GG SI GA++GGL++G +AE + + G ++ + + IL LL RPTG+
Sbjct 244 AAVLGGIGSIPGAMLGGLLLG----VAEAFGADVFGDQYKDVVAFGLLILVLLFRPTGIL 299
Query 286 GEQQVARV 293
G +V +V
Sbjct 300 GRPEVEKV 307
>P0A2J2 High-affinity branched-chain amino acid transport system
permease protein LivH [Salmonella typhi]
Length=308
Score = 102 bits (254), Expect = 1e-28
Identities = 73/306 (24%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query 3 FFLEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQG---------ALVLFSALTFVNL 53
+FL+ + G G Y+L+AIG+ ++Y G+ NFA G + ++ +AL + +
Sbjct 7 YFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGI 66
Query 54 TEHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVW 113
+ F + I I+ + + + N + ++ +G+S L+
Sbjct 67 DTSWLLVAAGFIGAIIIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTE 126
Query 114 GTQVHGLDLGISDVPI----DFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRA 169
G++ L + I + + ++ V ++ ++ L+ +R G + RA
Sbjct 127 GSRDVALPSLFNGQWIVGSSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRA 186
Query 170 VADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV--QFSLSLVVLKALPVL 227
A+D + +GI + + L + + +A VAG+L G GV + + +KA
Sbjct 187 CAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAA 246
Query 228 IIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLLIRPTGLFGE 287
++GG SI GA++GGLI+G +E L+ YL + ++ + + IL LL+ PTG+ G
Sbjct 247 VLGGIGSIPGAMIGGLILGVAEALSSAYL----STEYKDVVSFALLILVLLVMPTGILGR 302
Query 288 QQVARV 293
+V +V
Sbjct 303 PEVEKV 308
>P0A2J1 High-affinity branched-chain amino acid transport system
permease protein LivH [Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720)]
Length=308
Score = 102 bits (254), Expect = 1e-28
Identities = 73/306 (24%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query 3 FFLEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQG---------ALVLFSALTFVNL 53
+FL+ + G G Y+L+AIG+ ++Y G+ NFA G + ++ +AL + +
Sbjct 7 YFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGI 66
Query 54 TEHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVW 113
+ F + I I+ + + + N + ++ +G+S L+
Sbjct 67 DTSWLLVAAGFIGAIIIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTE 126
Query 114 GTQVHGLDLGISDVPI----DFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRA 169
G++ L + I + + ++ V ++ ++ L+ +R G + RA
Sbjct 127 GSRDVALPSLFNGQWIVGSSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRA 186
Query 170 VADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV--QFSLSLVVLKALPVL 227
A+D + +GI + + L + + +A VAG+L G GV + + +KA
Sbjct 187 CAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAA 246
Query 228 IIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLLIRPTGLFGE 287
++GG SI GA++GGLI+G +E L+ YL + ++ + + IL LL+ PTG+ G
Sbjct 247 VLGGIGSIPGAMIGGLILGVAEALSSAYL----STEYKDVVSFALLILVLLVMPTGILGR 302
Query 288 QQVARV 293
+V +V
Sbjct 303 PEVEKV 308
>P0AEX8 High-affinity branched-chain amino acid transport system
permease protein LivH [Escherichia coli O157:H7]
Length=308
Score = 101 bits (251), Expect = 3e-28
Identities = 72/306 (24%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query 3 FFLEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQG---------ALVLFSALTFVNL 53
+FL+ + G G Y+L+AIG+ ++Y G+ NFA G + ++ +AL + +
Sbjct 7 YFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGI 66
Query 54 TEHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVW 113
+ F + I I+ + + + N + ++ +G+S L+
Sbjct 67 DTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTE 126
Query 114 GTQVHGLDLGISDVPI----DFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRA 169
G++ L + + + + ++ V ++ ++ L+ +R G + RA
Sbjct 127 GSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRA 186
Query 170 VADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV--QFSLSLVVLKALPVL 227
A+D + +GI + + L + + +A VAG+L G GV + + +KA
Sbjct 187 CAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAA 246
Query 228 IIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLLIRPTGLFGE 287
++GG SI GA++GGLI+G +E L+ YL + ++ + + IL LL+ PTG+ G
Sbjct 247 VLGGIGSIPGAMIGGLILGIAEALSSAYL----STEYKDVVSFALLILVLLVMPTGILGR 302
Query 288 QQVARV 293
+V +V
Sbjct 303 PEVEKV 308
>P0AEX7 High-affinity branched-chain amino acid transport system
permease protein LivH [Escherichia coli (strain K12)]
Length=308
Score = 101 bits (251), Expect = 3e-28
Identities = 72/306 (24%), Positives = 142/306 (46%), Gaps = 19/306 (6%)
Query 3 FFLEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQG---------ALVLFSALTFVNL 53
+FL+ + G G Y+L+AIG+ ++Y G+ NFA G + ++ +AL + +
Sbjct 7 YFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGI 66
Query 54 TEHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVW 113
+ F + I I+ + + + N + ++ +G+S L+
Sbjct 67 DTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTE 126
Query 114 GTQVHGLDLGISDVPI----DFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRA 169
G++ L + + + + ++ V ++ ++ L+ +R G + RA
Sbjct 127 GSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRA 186
Query 170 VADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV--QFSLSLVVLKALPVL 227
A+D + +GI + + L + + +A VAG+L G GV + + +KA
Sbjct 187 CAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAA 246
Query 228 IIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLLIRPTGLFGE 287
++GG SI GA++GGLI+G +E L+ YL + ++ + + IL LL+ PTG+ G
Sbjct 247 VLGGIGSIPGAMIGGLILGIAEALSSAYL----STEYKDVVSFALLILVLLVMPTGILGR 302
Query 288 QQVARV 293
+V +V
Sbjct 303 PEVEKV 308
>P77315 Probable ABC transporter permease protein YphD [Escherichia
coli (strain K12)]
Length=332
Score = 67.8 bits (164), Expect = 3e-16
Identities = 72/247 (29%), Positives = 120/247 (49%), Gaps = 41/247 (17%)
Query 32 SGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLIDAL------VLKH 85
SG + + G +V F ++ F++ F V L + ++VLL+ AL VL+
Sbjct 76 SGEIDVSVGPMVAFVSVCLA--------FLLQFEVPLAVACLLVLLLGALMGTLAGVLRG 127
Query 86 LVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVPIDFYGIHLSKFDLVATL 145
+ N + F+ATLGL L G ++ T + + ++V +D+ G V+ L
Sbjct 128 VFN---VPSFVATLGLWSALRG--MGLFMTNALPVPIDENEV-LDWLGGQFLGVP-VSAL 180
Query 146 IAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLL 205
I L + F+ KT FG S+ AV + A+Q GI + + IL+++++GL+A V G+L
Sbjct 181 IMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGIL 240
Query 206 WGARL-----GVQFSLSLVVLKALPV---LIIGGFTSITGAIVGGLIIGASEKLAEIYLG 257
ARL G L V+ A+ V + GG S+ G ++G L+I
Sbjct 241 LAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVI------------ 288
Query 258 SLIGSGI 264
+LIG+G+
Sbjct 289 TLIGNGL 295
Score = 20.8 bits (42), Expect = 0.66
Identities = 22/83 (27%), Positives = 34/83 (41%), Gaps = 12/83 (14%)
Query 5 LEVLLG---GTLAGVMYS-------LVAIGFVLIYRASGVF--NFAQGALVLFSALTFVN 52
L +LLG GTLAGV+ + +G R G+F N + L ++
Sbjct 110 LVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLG 169
Query 53 LTEHGVPFIVAFAVTLFIIFIVV 75
GVP + LF +F+ +
Sbjct 170 GQFLGVPVSALIMIVLFALFVFI 192
>P0AGI2 Ribose import permease protein RbsC [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=321
Score = 59.3 bits (142), Expect = 2e-13
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 18/238 (8%)
Query 19 SLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLI 78
+++A+G L+ SG+ + + G+L+ + ++ V +VA A L + + +
Sbjct 57 AIMAVGMTLVILTSGI-DLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVT 115
Query 79 DALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVP--IDFYGIHL 136
+V K V F+ATL + +L G T ++ G ++ ++GI
Sbjct 116 GVIVAKGRVQA-----FIATLVMMLLLRGVTMVY--TNGSPVNTGFTENADLFGWFGIGR 168
Query 137 SKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVAG 196
I G + + ++ TR G + A+ + A++ GI +N I I+V+S+ G
Sbjct 169 PLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCG 228
Query 197 LVALVAGLLWGARL-------GVQFSLSLVVLKAL-PVLIIGGFTSITGAIVGGLIIG 246
L+A +AG++ ARL G + L + L + GG I G ++G LI+G
Sbjct 229 LLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILG 286
Score = 21.9 bits (45), Expect = 0.28
Identities = 16/51 (31%), Positives = 27/51 (53%), Gaps = 4/51 (8%)
Query 216 LSLVVLKALPVLIIGGFTSITGA----IVGGLIIGASEKLAEIYLGSLIGS 262
++LV+L + L +G ++TGA IVG + A + LG+ IG+
Sbjct 63 MTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGA 113
>P0AGI3 Ribose import permease protein RbsC [Escherichia coli
O157:H7]
Length=321
Score = 59.3 bits (142), Expect = 2e-13
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 18/238 (8%)
Query 19 SLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLI 78
+++A+G L+ SG+ + + G+L+ + ++ V +VA A L + + +
Sbjct 57 AIMAVGMTLVILTSGI-DLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVT 115
Query 79 DALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVP--IDFYGIHL 136
+V K V F+ATL + +L G T ++ G ++ ++GI
Sbjct 116 GVIVAKGRVQA-----FIATLVMMLLLRGVTMVY--TNGSPVNTGFTENADLFGWFGIGR 168
Query 137 SKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVAG 196
I G + + ++ TR G + A+ + A++ GI +N I I+V+S+ G
Sbjct 169 PLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCG 228
Query 197 LVALVAGLLWGARL-------GVQFSLSLVVLKAL-PVLIIGGFTSITGAIVGGLIIG 246
L+A +AG++ ARL G + L + L + GG I G ++G LI+G
Sbjct 229 LLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILG 286
Score = 21.9 bits (45), Expect = 0.28
Identities = 16/51 (31%), Positives = 27/51 (53%), Gaps = 4/51 (8%)
Query 216 LSLVVLKALPVLIIGGFTSITGA----IVGGLIIGASEKLAEIYLGSLIGS 262
++LV+L + L +G ++TGA IVG + A + LG+ IG+
Sbjct 63 MTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGA 113
>P0AGI1 Ribose import permease protein RbsC [Escherichia coli
(strain K12)]
Length=321
Score = 59.3 bits (142), Expect = 2e-13
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 18/238 (8%)
Query 19 SLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLI 78
+++A+G L+ SG+ + + G+L+ + ++ V +VA A L + + +
Sbjct 57 AIMAVGMTLVILTSGI-DLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVT 115
Query 79 DALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVP--IDFYGIHL 136
+V K V F+ATL + +L G T ++ G ++ ++GI
Sbjct 116 GVIVAKGRVQA-----FIATLVMMLLLRGVTMVY--TNGSPVNTGFTENADLFGWFGIGR 168
Query 137 SKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVAG 196
I G + + ++ TR G + A+ + A++ GI +N I I+V+S+ G
Sbjct 169 PLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCG 228
Query 197 LVALVAGLLWGARL-------GVQFSLSLVVLKAL-PVLIIGGFTSITGAIVGGLIIG 246
L+A +AG++ ARL G + L + L + GG I G ++G LI+G
Sbjct 229 LLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILG 286
Score = 21.9 bits (45), Expect = 0.28
Identities = 16/51 (31%), Positives = 27/51 (53%), Gaps = 4/51 (8%)
Query 216 LSLVVLKALPVLIIGGFTSITGA----IVGGLIIGASEKLAEIYLGSLIGS 262
++LV+L + L +G ++TGA IVG + A + LG+ IG+
Sbjct 63 MTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGA 113
>Q9F9B1 Fructose import permease protein FrcC [Rhizobium meliloti]
Length=360
Score = 58.5 bits (140), Expect = 4e-13
Identities = 71/298 (24%), Positives = 133/298 (45%), Gaps = 40/298 (13%)
Query 7 VLLGG------TLAGVMYSLVAIGFV-----LIYRASGVFNFAQGALVLFSALTFVNLTE 55
V+LGG T+ ++ + +G V L+ +G+ + + GA+++ S++ T
Sbjct 64 VILGGKFFSAFTMTLILQQVAIVGIVGAAQTLVILTAGI-DLSVGAIMVLSSVIMGQFT- 121
Query 56 HGVPFIVAFAVTLFIIF-IVVLLIDALVLKHLVNRSVITLFMATLGL-SYVLEGTAQAVW 113
F F L +I + V + + LV R + F+ TLG+ VL
Sbjct 122 ----FRYGFPPALSVICGLGVGALCGYINGTLVARMKLPPFIVTLGMWQIVLASNFLYSA 177
Query 114 GTQVHGLDLGISDVPIDFYGIHLSKFDLVAT---LIAGSLVIILSFLFTKTRFGISLRAV 170
+ D+ + + F+G + + V T ++ LV +L ++ +T +G + AV
Sbjct 178 NETIRAQDISANASILQFFGQNFRIGNAVFTYGVVVMVLLVCLLWYVLNRTAWGRYVYAV 237
Query 171 ADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGV------QF----SLSLVV 220
DDP A++ G+ + + I +++++GL+ +AG R+G QF S++ VV
Sbjct 238 GDDPEAAKLAGVNVTRMLISIYTLSGLICALAGWALIGRIGSVSPTAGQFANIESITAVV 297
Query 221 LKALPVLIIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIAILFLL 278
+ + + GG SI G + G LI+G LG + W LI +L ++
Sbjct 298 IGG--ISLFGGRGSIMGMLFGALIVGV------FSLGLRLMGTDPQWTYLLIGLLIII 347
>P36948 Ribose import permease protein RbsC [Bacillus subtilis
(strain 168)]
Length=322
Score = 57.0 bits (136), Expect = 1e-12
Identities = 61/239 (26%), Positives = 105/239 (44%), Gaps = 24/239 (10%)
Query 20 LVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLID 79
L+A G + G+ + + GA++ S+ + GV ++A + II V+ +I+
Sbjct 60 LIAFGMTFVILTGGI-DLSVGAILALSSALVAGMIVSGVDPVLAIILGC-IIGAVLGMIN 117
Query 80 ALVLKHLVNRSVITLFMATLGLSYVLEG-TAQAVWGTQVHGLDLGISDVPID---FYGIH 135
L L+ + + F+ATL V G T G + GL F GI
Sbjct 118 GL----LITKGKMAPFIATLATMTVFRGLTLVYTDGNPITGLGTNYGFQMFGRGYFLGIP 173
Query 136 LSKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVA 195
+ +V + IL L KT FG A+ + A+ GI++ + ++++S+A
Sbjct 174 VPAITMVLAFV------ILWVLLHKTPFGRRTYAIGGNEKAALISGIKVTRVKVMIYSLA 227
Query 196 GLVALVAGLLWGARL-------GVQFSLSLVVLKAL-PVLIIGGFTSITGAIVGGLIIG 246
GL++ +AG + +RL G + L + L + GG I G ++G LIIG
Sbjct 228 GLLSALAGAILTSRLHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTLIGVLIIG 286
Score = 32.7 bits (73), Expect = 1e-04
Identities = 14/51 (27%), Positives = 29/51 (57%), Gaps = 0/51 (0%)
Query 212 VQFSLSLVVLKALPVLIIGGFTSITGAIVGGLIIGASEKLAEIYLGSLIGS 262
+ F ++ V+L L +G +++ A+V G+I+ + + I LG +IG+
Sbjct 61 IAFGMTFVILTGGIDLSVGAILALSSALVAGMIVSGVDPVLAIILGCIIGA 111
Score = 21.2 bits (43), Expect = 0.49
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 7/66 (11%)
Query 216 LSLVVLKALPVLIIGGFTSI--TGAIVGGLIIGASEKLAEIYLGSLIGSGIENWFPYLIA 273
L+L+ A+ LI G T + TG I L +GA L+ + +I SG++ P L
Sbjct 49 LNLLRQVAINGLIAFGMTFVILTGGI--DLSVGAILALSSALVAGMIVSGVD---PVLAI 103
Query 274 ILFLLI 279
IL +I
Sbjct 104 ILGCII 109
Score = 19.2 bits (38), Expect = 2.0
Identities = 22/101 (22%), Positives = 43/101 (43%), Gaps = 10/101 (10%)
Query 70 IIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVWGT--------QVHGLD 121
+I+ + L+ AL L +R + T G SY L+ A V G ++ G
Sbjct 222 MIYSLAGLLSALAGAILTSR--LHSAQPTAGESYELDAIAAVVLGGTSLSGGRGRIVGTL 279
Query 122 LGISDVPIDFYGIHLSKFDLVATLIAGSLVIILSFLFTKTR 162
+G+ + G++L L+ +VI+++ L + +
Sbjct 280 IGVLIIGTLNNGLNLLGVSSFYQLVVKGIVILIAVLLDRKK 320
Score = 18.5 bits (36), Expect = 3.5
Identities = 25/117 (21%), Positives = 49/117 (42%), Gaps = 23/117 (20%)
Query 68 LFIIFIVVLLIDALVLKHL----VNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLG 123
LFI+ I+V +++ L+ L + R V + G+++V+ G+DL
Sbjct 28 LFILVIIVSILNPSFLEPLNILNLLRQVAINGLIAFGMTFVI----------LTGGIDLS 77
Query 124 ISDV----PIDFYGIHLSKFDLVATLIAGSLV-----IILSFLFTKTRFGISLRAVA 171
+ + G+ +S D V +I G ++ +I L TK + + +A
Sbjct 78 VGAILALSSALVAGMIVSGVDPVLAIILGCIIGAVLGMINGLLITKGKMAPFIATLA 134
>P44885 Galactose/methyl galactoside import permease protein MglC
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121 /
KW20 / Rd)]
Length=336
Score = 57.0 bits (136), Expect = 1e-12
Identities = 50/219 (23%), Positives = 102/219 (47%), Gaps = 19/219 (9%)
Query 50 FVNLTEHGVPFIVAFAVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATLGLSYVLEGTA 109
F + + +P ++ + + I V+ L++ LV+ +L +T F+AT+G ++ G
Sbjct 97 FPEMGQIPIPVVI---LAVCAIGAVIGLVNGLVIAYLN----VTPFIATMGTMIIIYGFN 149
Query 110 Q----AVWGTQVHGLDLGISDVPIDFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGI 165
AV G+ + G S F+ + K + T+ A +++ ++ KTRFG
Sbjct 150 SLYYDAVGGSPIAGFSENFSTFAQGFFRVGSFKLSYI-TIYAAIAALLVWIMWNKTRFGK 208
Query 166 SLRAVADDPLASQSVGIRLNYIWILVWSVAGLVALVAGLLWGARLGVQFSL--SLVVLKA 223
++ A+ +P A++ G+ + + ++ +AG+ G+L R+G + + L A
Sbjct 209 NVFAIGGNPEAAKVSGVNVARNLVAIYMIAGMFYAFGGMLEAGRIGSATNNLGFMYELDA 268
Query 224 LPVLIIGG--FTSITGAIVG---GLIIGASEKLAEIYLG 257
+ ++GG F G ++G G+II Y+G
Sbjct 269 IAACVVGGVSFAGGVGTVIGVITGVIIFTVINYGLTYIG 307
>P44736 Ribose import permease protein RbsC [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=323
Score = 56.2 bits (134), Expect = 2e-12
Identities = 58/241 (24%), Positives = 107/241 (44%), Gaps = 24/241 (10%)
Query 19 SLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTLFIIFIVVLLI 78
+++A+G + +G+ L L A+ +V+ + +F++ VVLLI
Sbjct 55 AIIAVGMTFVILIAGIDLSVGSVLALTGAIA---------ASMVSIELPIFLVIPVVLLI 105
Query 79 DAL---VLKHLVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVPIDFYGIH 135
L + +V + + F+ATL +L G T + G SD F I
Sbjct 106 GTLLGGISGVIVAKGKVQAFIATLVTMTLLRGITMVY--TDGRPITTGFSDNADLFASIG 163
Query 136 LSK-FDLVATLIAGSLVIILSFLFTK-TRFGISLRAVADDPLASQSVGIRLNYIWILVWS 193
+ + S+V +++ K T G + A+ + A+Q GI +N I + V++
Sbjct 164 TGYVLGIPVPIWIMSIVFAVAWYILKDTPIGRYIYALGGNEAATQLSGINVNKIKVFVFA 223
Query 194 VAGLVALVAGLLWGARL-------GVQFSLSLVVLKAL-PVLIIGGFTSITGAIVGGLII 245
V+G ++ +AGL+ +RL GV + L + + ++GG + G ++G LII
Sbjct 224 VSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAAVVVGGTSLMGGKGRVMGTLIGALII 283
Query 246 G 246
G
Sbjct 284 G 284
Score = 18.1 bits (35), Expect = 4.7
Identities = 8/15 (53%), Positives = 10/15 (67%), Gaps = 0/15 (0%)
Query 14 AGVMYSLVAIGFVLI 28
AGV Y L AI V++
Sbjct 247 AGVSYELDAIAAVVV 261
>A2RKA5 Nucleoside ABC transporter permease protein NupC [Lactococcus
lactis subsp. cremoris (strain MG1363)]
Length=317
Score = 55.8 bits (133), Expect = 3e-12
Identities = 73/281 (26%), Positives = 133/281 (47%), Gaps = 30/281 (11%)
Query 22 AIGFVLIYRASGVFNFAQGALVL--FSALTFVNLTEHGV-----PFI-VAFAVTLFIIFI 73
+IG V R V +G + + FS++ F NLT G+ P++ + F + +F
Sbjct 25 SIGGVFSERGGIVNVGLEGIMTIGAFSSVVF-NLTTAGMFGSMTPWLSILFGALIGALFS 83
Query 74 VVLLIDALVLK--HLVNRSVITLFMATLGLSYVLEGTAQAVWGTQVHGLDLGISDVPIDF 131
+ + + L+ H+V+ +V+ L LG+ ++L+ Q G +G +VP+
Sbjct 84 SLHAVATVNLRADHIVSGTVLNLMAPALGV-FLLQVFYQQ--GQININEQIGYWNVPLLS 140
Query 132 YGIHLSKFDLVATLIAGSLVIILSFL----FTKTRFGISLRAVADDPLASQSVGIRL-NY 186
+ K T + G L I+++ L KTRFG+ LR+V ++P A+ ++GI + Y
Sbjct 141 NIPVIGKIFFTQTSLPGFLAIVVAILAWYVLFKTRFGLRLRSVGENPQAADTLGINVYAY 200
Query 187 IWILVWSVAGLVALVAGLLWGARLGVQFSLSLVV---LKALPVLIIGGFTSITGAIVGGL 243
W V ++G++ V G ++ + FS+S + +L +I G + I GA++ L
Sbjct 201 RWAGV-LLSGVLGGVGGAIYAQAISGNFSVSTIAGQGFISLAAMIFGKWNPI-GAMLSSL 258
Query 244 IIGASEKLAEIYLGSLIG-----SGIENWFPYLIAILFLLI 279
+ G LA + G + G S PY+ I+ L +
Sbjct 259 LFGLFTSLA-VVGGQIPGIKEIPSSFLQMAPYVFTIIVLAL 298
>Q2PBM2 Autoinducer 2 import system permease protein LsrC [Photorhabdus
temperata]
Length=333
Score = 54.3 bits (129), Expect = 1e-11
Identities = 52/233 (22%), Positives = 112/233 (48%), Gaps = 27/233 (12%)
Query 34 VFNFAQGALVLFSALTFVNLTEH----------------GVPFIVAFAVTLFIIFIVVL- 76
+F+ AQ ++L T V LT + G+ F++ + +F ++L
Sbjct 40 IFSSAQILILLAMGATLVMLTRNIDVSVGSITGLCAVIMGMSLNAGFSLPVSCLFTLLLG 99
Query 77 LIDALVLKHLVNRSVITLFMATLGLSYVLEGTAQAVW-GTQVHGLDLGISDVPIDFYGIH 135
+ L LV I +ATLG + G + G + GL + + + ++
Sbjct 100 MCAGLFNGVLVTWLKIPAIVATLGTLGLYRGFMLLLTDGKWIEGLPDELKSLSAPLW-LN 158
Query 136 LSKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVGIRLNYIWILVWSVA 195
+S + + LV+ ++++ KT FG A D+ ++ +G+R N I I+ +SV
Sbjct 159 ISPIGWLLMI----LVLAMAWILAKTAFGRGFYATGDNLQGARQLGVRTNSIRIIAFSVN 214
Query 196 GLVALVAGLLWGARLGV--QFSLSLVVLKALPVLIIGGFTSI--TGAIVGGLI 244
G++A +AG+++ +++G + + + +KA+ ++GG + + TG+++G ++
Sbjct 215 GVMAALAGIVFASQIGFIPNQTGNGLEMKAIAACVLGGISLLGGTGSVIGAIL 267
>Q8ZKQ2 Autoinducer 2 import system permease protein LsrD [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=332
Score = 53.1 bits (126), Expect = 2e-11
Identities = 63/253 (25%), Positives = 110/253 (43%), Gaps = 18/253 (7%)
Query 5 LEVLLGGTLAGVMYSLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAF 64
+ VLL T + +VA+ ++ SG + + G+ + A+T L + G+P +A
Sbjct 34 INVLLFSTSDFICIGIVALPLTMVI-VSGGMDISFGSTIGLCAITLGVLFQLGMPLPLAI 92
Query 65 AVTLFIIFIVVLLIDALVLKHLVNRSVITLFMATL--GLSYVLEGTAQAVWGTQVHGLDL 122
+TL + I L+ L++ VN VITL L G + +L G A A + G
Sbjct 93 IITLLLGAICGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPT 152
Query 123 GISD-VPIDFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVG 181
+D I F GI + L+ L+ + L +T G ++ + +Q
Sbjct 153 AFTDFANISFLGIPM---PLIFFLVC---CLFFWLLMHRTHMGRNVFLIGQSARVAQYSA 206
Query 182 IRLNYIWILVWSVAGLVALVAGLL----WGAR---LGVQFSLSLVVLKAL-PVLIIGGFT 233
I +N V+++ G + +A +L +G+ LG F + + L I GG
Sbjct 207 IPVNRTLYTVYAMTGCASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSG 266
Query 234 SITGAIVGGLIIG 246
SI G+ + L++G
Sbjct 267 SIMGSALAALLVG 279
Score = 25.8 bits (55), Expect = 0.017
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (15%)
Query 193 SVAGLVALVAGLLWGARLGVQFSLSLVVLKALPVLIIGGFTSITGAIVGGLIIGASEKLA 252
S GL A+ G+L+ +LG+ L++++ L++G +I G I GLII
Sbjct 69 STIGLCAITLGVLF--QLGMPLPLAIII-----TLLLG---AICGLINAGLIIYTGVNPL 118
Query 253 EIYLGSL 259
I LG++
Sbjct 119 VITLGTM 125
Score = 19.6 bits (39), Expect = 1.5
Identities = 18/68 (26%), Positives = 31/68 (46%), Gaps = 1/68 (1%)
Query 9 LGGTLAGVMYSLVAIGFVLIYRASGVFNFAQGALVLFSALTFVNLTEHGVPFIVAFAVTL 68
LG + + V +G IY SG + A +L L L GVP ++ A++
Sbjct 242 LGASFLMPAITAVVLGGANIYGGSGSIMGSALAALLVGFLQ-QGLQMAGVPNQISSALSG 300
Query 69 FIIFIVVL 76
++ +VV+
Sbjct 301 ALLIVVVV 308
>O05255 Guanosine ABC transporter permease protein NupQ [Bacillus
subtilis (strain 168)]
Length=319
Score = 52.4 bits (124), Expect = 4e-11
Identities = 78/297 (26%), Positives = 138/297 (46%), Gaps = 47/297 (16%)
Query 20 LVAIGFVLIYRASGVFNFAQGALVLFSALTFV--NL---TEHGV--PFI-VAFAVTLFII 71
L A+G V R SGV N L++ A T V NL E G P++ + A+ +
Sbjct 23 LTALGGVFSER-SGVVNIGLEGLMIIGAFTSVLFNLFFGQELGAAAPWLSLLAAMAAGAL 81
Query 72 FIVVLLIDALVLKHLVNRSVITLFMATLGLSY----VLEGTAQA------VWGTQVHGLD 121
F ++ A+ + S + + M LG + ++ G AQ + T++ GL
Sbjct 82 FSLIHAAAAISFRADQTVSGVAINMLALGATLFIVKLIYGKAQTDKIPEPFYKTKIPGL- 140
Query 122 LGISDVPIDFYGIHLSKFDLVATLIAGSLVIILSFLFTKTRFGISLRAVADDPLASQSVG 181
D+P+ G +++A +L I F+ KT FG+ +R+V + P+A+ ++G
Sbjct 141 ---GDIPV--LGKIFFSDVYYTSILAIALAFISWFILFKTPFGLRIRSVGEHPMAADTMG 195
Query 182 I---RLNYIWILVWSVAGLVALVAGLLWGARLGVQFSLSLVV---LKALPVLIIGGFTSI 235
I ++ YI ++ ++GL + G ++ + + + F+ S + AL L+ G + I
Sbjct 196 INVYKMRYIGVM---ISGLFGGLGGGVYASTIALDFTHSTISGQGFIALAALVFGKWHPI 252
Query 236 TGAIVGGLIIGASEKLAEIYLGSLIG--SGIENWF----PYLIAILFLLIRPTGLFG 286
GA+ L G ++ L+ +GSL+ I N + PY++ IL L TG G
Sbjct 253 -GALGAALFFGFAQSLS--IIGSLLPLFKDIPNVYMLMAPYILTILAL----TGFIG 302
Lambda K H a alpha
0.333 0.148 0.439 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1221415
Database: 7fda86f51bd713f22cc5194ac6447191.SwissProt.fasta
Posted date: May 30, 2024 12:51 PM
Number of letters in database: 5,791
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
