BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fd640f3bbc802c5ec1074d395f3e155b.SwissProt.fasta
2 sequences; 1,428 total letters
Query= ACIAD1963
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
Q1WVA9 Carbamoyl phosphate synthase large chain [Ligilactobacillu... 43.1 2e-08
A5UK38 Carbamoyl-phosphate synthase [Methanobrevibacter smithii (... 40.4 1e-07
>Q1WVA9 Carbamoyl phosphate synthase large chain [Ligilactobacillus
salivarius (strain UCC118)]
Length=1061
Score = 43.1 bits (100), Expect = 2e-08
Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 48/280 (17%)
Query 60 SVADIALQEPPFSERVEWVLQQAQRLNVKLIIAGHHAAIYLA---EKHRFEQLGIRLMAG 116
S++D EP E V V+ Q + V ++ G AI LA E H + LG
Sbjct 603 SISDKLYFEPLTLEDVLNVIDLEQPMGV-IVQFGGQTAINLAAGLEAHSVKILGT----- 656
Query 117 CDTLDQIEQLNDKSLFTQICLNHSLAVAPATIVENAEQLQDAYHDWRQKGEVCVKPAKGV 176
T++ +++ D+ LF Q N L EQ+ + V V+P+ +
Sbjct 657 --TVEDLDRAEDRELFDQTIKNLGLKQPIGKTATTQEQVIACAEEIGYP--VLVRPSYVL 712
Query 177 FASGFWHLDPSANSFDVFANSMRFKAHPESFIESYRQLEKPPVYLVMPFLSGLECSVDML 236
++ D A + + +++ P LV +LSGLEC VD +
Sbjct 713 GGRAMEIVNNEQELLDYLAQN------------APAEIDHP--ILVDAYLSGLECEVDAI 758
Query 237 C--------------IHGQVHG--AIARYKQKNGCQNLTFEDPAIELAYQVAALFGCDGL 280
C H VH ++A Y ++ +N+ + ++ ++A C G+
Sbjct 759 CDGKDVLLPGIMEHIEHAGVHSGDSMAVYPPQSFDENI--KQQIVDATEKLAVALKCVGI 816
Query 281 VNMQARYNDQQQLYILEVNSRPSGGIAHTFMSGVNLVHLA 320
+N+Q ++ + Y+LEVN R S + F+S + + +A
Sbjct 817 MNIQFIIHN-NEAYVLEVNPRASRTV--PFLSKITGIEMA 853
Score = 36.6 bits (83), Expect = 3e-06
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 11/164 (7%)
Query 59 TSVADIALQEPPFSERVEWVLQQAQRLNVKLIIAGH---HAAIYLAEKHRFEQLGIRLMA 115
T +AD EP E V +++Q + + G + AI LA+ E+LGI+L+
Sbjct 58 TEIADKVYIEPLTVESVSRIIRQEFPDAILPTLGGQIGLNLAIALAKTGILEELGIKLLG 117
Query 116 GCDTLDQIEQLNDKSLFTQICLNHSLAVAPATIVENAEQLQDAYHDWRQKGEVCVKPAKG 175
LD I+Q D+ F + + V + VE ++ D + V V+PA
Sbjct 118 --TQLDAIDQAEDRQRFKDLMQELNEPVPDSKTVETVQEALDFAAEIGY--PVIVRPAFT 173
Query 176 VFASGFWHLDPSANSFDVFANSMRFKAHPESFIE----SYRQLE 215
+ +G D ++ AN + + IE Y+++E
Sbjct 174 MGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEKSIMGYKEIE 217
>A5UK38 Carbamoyl-phosphate synthase [Methanobrevibacter smithii
(strain ATCC 35061 / DSM 861 / OCM 144 / PS)]
Length=367
Score = 40.4 bits (93), Expect = 1e-07
Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 1/38 (3%)
Query 268 AYQVAALFGCDGLVNMQARYN-DQQQLYILEVNSRPSG 304
AY+VA G DG+ M ++ D+QQLY +EVN+RP+G
Sbjct 237 AYKVAKNLGSDGIFEMDFMFSKDEQQLYAIEVNTRPNG 274
Score = 16.2 bits (30), Expect = 5.7
Identities = 5/13 (38%), Positives = 8/13 (62%), Gaps = 0/13 (0%)
Query 225 FLSGLECSVDMLC 237
+L+ C V+ LC
Sbjct 277 YLTTATCGVNSLC 289
Lambda K H a alpha
0.324 0.136 0.414 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 421200
Database: fd640f3bbc802c5ec1074d395f3e155b.SwissProt.fasta
Posted date: May 9, 2024 7:21 AM
Number of letters in database: 1,428
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
