BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a35683ae0f068fb83565ec2bb0a9a766.SwissProt.fasta
18 sequences; 12,226 total letters
Query= ACIAD1970
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
P43746 DNA polymerase III subunit tau/gamma [Haemophilus influenz... 399 2e-132
P06710 DNA polymerase III subunit tau [Escherichia coli (strain K... 393 9e-131
P74876 DNA polymerase III subunit tau [Salmonella typhimurium (st... 392 3e-130
P57553 DNA polymerase III subunit gamma [Buchnera aphidicola subs... 327 6e-109
Q89A95 DNA polymerase III subunit gamma [Buchnera aphidicola subs... 327 8e-109
Q8K983 DNA polymerase III subunit gamma [Buchnera aphidicola subs... 311 8e-103
P09122 DNA polymerase III subunit gamma/tau [Bacillus subtilis (s... 256 1e-79
P47658 DNA polymerase III subunit gamma/tau [Mycoplasma genitaliu... 223 5e-67
P9WNT8 DNA polymerase III subunit gamma/tau [Mycobacterium tuberc... 219 7e-66
P63976 DNA polymerase III subunit gamma/tau [Mycobacterium bovis ... 219 7e-66
P9WNT9 DNA polymerase III subunit gamma/tau [Mycobacterium tuberc... 219 7e-66
P75177 DNA polymerase III subunit gamma/tau [Mycoplasma pneumonia... 216 1e-63
F4HW65 Protein STICHEL-like 1 [Arabidopsis thaliana] 166 2e-45
O64728 Protein STICHEL [Arabidopsis thaliana] 160 1e-43
F4JRP8 Protein STICHEL-like 2 [Arabidopsis thaliana] 159 2e-43
F4JRP0 Protein STICHEL-like 3 [Arabidopsis thaliana] 148 9e-40
F4KEM0 Protein STICHEL-like 4 [Arabidopsis thaliana] 145 8e-39
Q9UXF5 Replication factor C small subunit [Saccharolobus solfatar... 80.9 2e-19
>P43746 DNA polymerase III subunit tau/gamma [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=688
Score = 399 bits (1024), Expect = 2e-132
Identities = 270/729 (37%), Positives = 389/729 (53%), Gaps = 76/729 (10%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQVLARK+RP+ F ++VGQ H+ AL + L+ RLHHAYLF+GTRGVGKT+IAR+ AK L
Sbjct 3 YQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NC G+T+TPC C CKA+ +G FIDLIEIDAASRTKVEDTRELLDNV Y P GRFKV
Sbjct 63 NCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS HSFNALLKTLEEPPE+VKFL ATTDPQKLP+T++SRCLQF L+ L +
Sbjct 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQ 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I+ HL IL +E I + A+ ++A++AQGS+RD+LSLTDQAIA G V + V MLG
Sbjct 183 ISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301
L+D D++ A+HQ + + L + A D +L + LH++AL+Q LP+
Sbjct 243 LLDDNYSVDILYALHQGNGELLMRTLQRVADAAGDWDKLLGECAEKLHQIALMQLLPQ-- 300
Query 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRPL 361
S + N+ LAK +S +++Q +YQ+ GR +L + + G EM +LR LAF P
Sbjct 301 --KSSDNNEHFSFLAKHISPENVQFFYQVIVSGRKDLSNAPNRRIGAEMTLLRALAFHPK 358
Query 362 SIDEVTVHASSQPSELQINQLPPAADSETDSSSRSELQHTNNRIEPDLEGSVVISVISQE 421
+ V P PP S+ S +++T N ++ + V+SQ
Sbjct 359 FLTAV-------PKANTTITPPP--------STPSAVENTGNYVD--------VPVLSQS 395
Query 422 AESFEAEQVVNHTT----------DDCQTAKTRQNKDVSSAVVEAEQENILVFNANSDDI 471
+S ++ N T+ D + +N++ E + E++ V + I
Sbjct 396 IKSAYSQAKPNKTSIPNLASLSALDALEHLTQLENQERQ----EHKAESLAVVSETLHHI 451
Query 472 VGIEQNKTAVVLAAQDMPFFPVEEERQIANHQHIALPAERVEQADTYQPEPHQVTQPISD 531
+++ K + + M PV E + +HI P P Q
Sbjct 452 QELDEEK-----SHKKMTALPVREMTE-PKPKHIEKPT-----------LPSNAAQAPQK 494
Query 532 SSSEESSLD---ALADDESTPLIDLSIDTNEHKVQVTSAAN-DLEVMPQDILKLAEQELE 587
+S+EE+S D +A DE LS DT + A D V P DI + +++
Sbjct 495 NSTEENSSDDNVEIAQDEQE---ILSADTYRWEWSNPELAKADTGVCPSDIKQAILKDIT 551
Query 588 GEWTL---------EKWEYWFRTSQLSPAVQELAQYGLMSGNIDGICTFNIPQQYEGMLS 638
E L ++W S L+ +ELA + D + + +
Sbjct 552 PELRLKIITQTQQQDQWADIVERSGLTGFSKELALNCFLQSKTDDEINLGLHSEKSHLRQ 611
Query 639 --QLQHALESEVKSRWPNTQFTVKYGKVNEITPYIKQIERKEKAFQRAIDLLQQNPVVKD 696
+++ E+ K + + + T+ N TP + + ++A + LQ++ ++
Sbjct 612 DRSIKNLAEALSKLQGKDIRLTINLDDSNVTTPIEYRRNIYQALREKAQNELQKDSKLQI 671
Query 697 LLNTFDGQL 705
LLN FD +L
Sbjct 672 LLNEFDAKL 680
>P06710 DNA polymerase III subunit tau [Escherichia coli (strain
K12)]
Length=643
Score = 393 bits (1009), Expect = 9e-131
Identities = 211/410 (51%), Positives = 273/410 (67%), Gaps = 6/410 (1%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQVLARK+RP+ F ++VGQ HV AL + L GR+HHAYLF+GTRGVGKT+IAR+LAK L
Sbjct 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NCETGIT+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV
Sbjct 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS HSFNALLKTLEEPPEHVKFL ATTDPQKLP+T++SRCLQF L+ L V++
Sbjct 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I L IL +E I + A+ +A +A+GSLRDALSLTDQAIA G G V Q V MLG
Sbjct 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301
+D L+ A+ + RV L+ + + ++ +L +++ LH +A++Q P
Sbjct 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL 302
Query 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRP- 360
I ++ +LA+ + D+QLYYQ GR EL + + G EM +LR LAF P
Sbjct 303 GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPR 362
Query 361 LSIDEVTVHASS-----QPSELQINQLPPAADSETDSSSRSELQHTNNRI 405
+ + E V S + + Q+PP S + L T +++
Sbjct 363 MPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQAPTVPLPETTSQV 412
>P74876 DNA polymerase III subunit tau [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=642
Score = 392 bits (1006), Expect = 3e-130
Identities = 204/359 (57%), Positives = 254/359 (71%), Gaps = 0/359 (0%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQVLARK+RP+ F ++VGQ HV AL + L GR+HHAYLF+GTRGVGKT+IAR+LAK L
Sbjct 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NCETGIT+TPC VC C+ + +GRF+DLIEIDAASRTKVEDTR+LLDNV YAP +GRFKV
Sbjct 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS HSFNALLKTLEEPP HVKFL ATTDPQKLP+T++SRCLQF L+ L V++
Sbjct 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I L IL +E I + A+ ++ +A GSLRDALSLTDQAIA G G V Q V MLG
Sbjct 183 IRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301
+D L+ A+ RV L+ + + ++ +L +++S LH +A++Q P
Sbjct 243 TLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRIAMVQLSPAAL 302
Query 302 LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLAFRP 360
I Q++ +LA+ V DLQLYYQ GR EL + + G EM +LR LAF P
Sbjct 303 GSDMAAIEQRMRELARTVPPGDLQLYYQTLLIGRKELPWAPDRRMGVEMTLLRALAFHP 361
Score = 21.2 bits (43), Expect = 3.1
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 539 LDALADDESTPLIDLSIDTNEHKV 562
L L DD++ L++ +D N +V
Sbjct 241 LGTLDDDQALSLVEAVVDANGERV 264
>P57553 DNA polymerase III subunit gamma [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=361
Score = 327 bits (837), Expect = 6e-109
Identities = 167/357 (47%), Positives = 247/357 (69%), Gaps = 1/357 (0%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQ+LARK+RP+ F +++GQ H+ A+++ L GR+HHA+L +GTRG+GKTTIAR+LAK L
Sbjct 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NC+ GITS PC C CK + +G +D+IEID ASRTKVE+ RE+LD++ Y+P + RFKV
Sbjct 63 NCQNGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS HSFNALLKTLEEPPEHVKF+ ATTD ++P T+ISRCL F L+ ++ ++
Sbjct 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEK 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I L IL KE I+ D+ ++ +IA A GS+RDAL+L + AI G G V+ ++V +MLG
Sbjct 183 IFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301
L+ + L A+ + + + LL + ++ +L +++ L+ ++ Q P +
Sbjct 243 LLPEKYSFLLTDAVLKKDSKKTMLLLNKISSIGVEWEEILIEMLRFLYHISTSQSFPLVW 302
Query 302 LK-YSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLLA 357
K ++E+ +I K+A+ ++QL YQI GR EL+ + +Q+ G EM +LR+++
Sbjct 303 EKIFTEKYKNQIQKIAQNNKKTNIQLCYQILLNGRKELKFAPSQKIGVEMSLLRVIS 359
>Q89A95 DNA polymerase III subunit gamma [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=370
Score = 327 bits (837), Expect = 8e-109
Identities = 160/361 (44%), Positives = 256/361 (71%), Gaps = 11/361 (3%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
Y +LA+K+RP+ F +++GQ ++ A++++L GR+HHA+LF G RG GKTTIARILAK L
Sbjct 3 YHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NC+ GI+ PC C+ C V +G FIDL E+DAASRTKVED +ELLDN+ Y P++GRFK+
Sbjct 63 NCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKI 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS +SFN LLK +EEPP+H+KF+ ATT+ +K+P T++SRCLQF L+P+ ++E
Sbjct 123 YLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNE 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I + ++ IL KE I + A+ I++ ++GSLRDA++LT+Q I+ G+G + + V++ LG
Sbjct 183 IVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLG 242
Query 242 LI-DRTIIYDLILAIHQNQTARVSQLLMQFR---QQALDVSLVLDQLISTLHELALLQYL 297
++ + I+Y L ++++ + L++ F+ ++ +L +++ LH++++++ +
Sbjct 243 MLYEDQILYILTTLLNKD----LKNLVLCFKYISDTHINFENILVEILQLLHQISIIKII 298
Query 298 PELSL---KYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLR 354
P + L KYS+ + I K+A++ + D+ LYYQ A G+ EL ++ Q+ EM +LR
Sbjct 299 PSIKLNDTKYSKNMQHAIQKIAELSNYNDIYLYYQTALLGKKELHIAPDQKISIEMTLLR 358
Query 355 L 355
+
Sbjct 359 M 359
>Q8K983 DNA polymerase III subunit gamma [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=363
Score = 311 bits (796), Expect = 8e-103
Identities = 158/356 (44%), Positives = 244/356 (69%), Gaps = 1/356 (0%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQ+LARK+RP++F +++GQ ++ +A+++ G++HHA+L +GTRGVGKTTIAR++AK L
Sbjct 3 YQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSL 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NCE GITS PC C C+ + +G +D IEIDAASRTKVE+ RE+LDN+ Y P++ RFKV
Sbjct 63 NCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
YLIDEVHMLS HSFNALLKTLEEPP+H+KF+ ATTD +K+P T+ SRCL F L L+ ++
Sbjct 123 YLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEED 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I + L IL K D++A+ I++ A GS+RDAL+L + A+ + ++ ++ EMLG
Sbjct 183 IFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL- 300
+ ++ + L + + + ++ LL + + L+ +L +++ LH +A+L+ P++
Sbjct 243 IPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLEWQNILIEMMRFLHHIAMLKSYPKIW 302
Query 301 SLKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLL 356
+ + + +I K+A+ S ++QL Y+I KGR EL S + G EM +L+ +
Sbjct 303 NQIFIKNNENEIKKIAENNSKYNIQLCYKILLKGRKELFFSPNHKMGVEMILLQAI 358
>P09122 DNA polymerase III subunit gamma/tau [Bacillus subtilis
(strain 168)]
Length=563
Score = 256 bits (654), Expect = 1e-79
Identities = 132/355 (37%), Positives = 211/355 (59%), Gaps = 1/355 (0%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
YQ L R +RP+ F ++VGQ H+++ L +AL + + HAYLF+G RG GKT+ A+I AK +
Sbjct 3 YQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NCE PC CA CK + G D+IEIDAAS V++ R++ D V +AP+ +KV
Sbjct 63 NCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
Y+IDEVHMLS +FNALLKTLEEPPEH F+ ATT+P K+P+T+ISRC +F + +
Sbjct 123 YIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 182
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I + I+ EQ++ ++ ++ IA +A G +RDALSL DQAI++ + +D + G
Sbjct 183 IVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITG 242
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL- 300
+ + I L ++H + + L + QQ D + +++ +I ++ L + P L
Sbjct 243 AVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDMLLYKTAPGLE 302
Query 301 SLKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRL 355
+ ++++ +L++ + AQ L I K E++ + FE+ V+++
Sbjct 303 GVLEKVKVDETFRELSEQIPAQALYEMIDILNKSHQEMKWTNHPRIFFEVAVVKI 357
>P47658 DNA polymerase III subunit gamma/tau [Mycoplasma genitalium
(strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)]
Length=597
Score = 223 bits (568), Expect = 5e-67
Identities = 119/308 (39%), Positives = 178/308 (58%), Gaps = 1/308 (0%)
Query 1 MYQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60
M+QV +KYRP NF + +GQ + + L +A+ R +L + Y+F+G RG GKTT A+I+AK
Sbjct 1 MHQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKA 60
Query 61 LNCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFK 120
+NC C C CK++N ID++EIDAAS+ + D REL++NV P + K
Sbjct 61 INCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKK 120
Query 121 VYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVD 180
VY++DE HML+T S+ LLKTLEE P +V F+F TT+ K+P+T++SRC F + + D
Sbjct 121 VYILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSD 180
Query 181 EITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQG-AVHHQDVKEM 239
I L I KE+I+ +KDA+ +IA+ +QGSLRD LSL DQ + + DV++
Sbjct 181 LILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKT 240
Query 240 LGLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPE 299
++DR + I A+ LL F L+ + L +L + L L
Sbjct 241 FNIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYAYAKLKN 300
Query 300 LSLKYSEE 307
+++ S E
Sbjct 301 INVLDSTE 308
>P9WNT8 DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=578
Score = 219 bits (559), Expect = 7e-66
Identities = 160/493 (32%), Positives = 256/493 (52%), Gaps = 21/493 (4%)
Query 5 LARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64
L RKYRP +F E+VGQ HV+ L+ AL+ GR++HAYLF+G RG GKT+ ARILA+ LNC
Sbjct 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query 65 TGITSTPCEVCATCKAV--NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVY 122
G T+ PC VC +C ++ N ID++E+DAAS V+DTREL D YAP Q R++V+
Sbjct 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query 123 LIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182
++DE HM++T FNALLK +EEPPEH+ F+FATT+P+K+ T+ SR + R L +
Sbjct 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query 183 TSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVH--HQDVKEML 240
+ L I +E + D + + GS RD LS+ DQ +A G H + +L
Sbjct 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA-GAADTHVTYTRALGLL 241
Query 241 GLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL 300
G+ D +I D + A+ A + + D L+ +L +LQ +P+
Sbjct 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301
Query 301 S----LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLL 356
+ + E+ ++ + A + L Y ++ G E++ + E+ RLL
Sbjct 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361
Query 357 AFRPLSID-EVTVHASSQPSELQINQLPPAADS-ETDSSSRSELQHTNNRIEPDLEGSVV 414
P + D E + + E +++ PA + S++ +E +H +P E V
Sbjct 362 L--PSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKH-----QPAREPRPV 414
Query 415 ISVISQEAE-SFEAEQVVNHTTDDCQTAKTRQNK-DVSSAVVEAEQENILVFNANSDDIV 472
++ +E + A + + T D ++R + ++ A V A ++N LV S +
Sbjct 415 LAPTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLA 474
Query 473 -GIEQNKTAVVLA 484
+ + + A VLA
Sbjct 475 RRLSEQRNADVLA 487
>P63976 DNA polymerase III subunit gamma/tau [Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97)]
Length=578
Score = 219 bits (559), Expect = 7e-66
Identities = 160/493 (32%), Positives = 256/493 (52%), Gaps = 21/493 (4%)
Query 5 LARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64
L RKYRP +F E+VGQ HV+ L+ AL+ GR++HAYLF+G RG GKT+ ARILA+ LNC
Sbjct 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query 65 TGITSTPCEVCATCKAV--NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVY 122
G T+ PC VC +C ++ N ID++E+DAAS V+DTREL D YAP Q R++V+
Sbjct 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query 123 LIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182
++DE HM++T FNALLK +EEPPEH+ F+FATT+P+K+ T+ SR + R L +
Sbjct 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query 183 TSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVH--HQDVKEML 240
+ L I +E + D + + GS RD LS+ DQ +A G H + +L
Sbjct 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA-GAADTHVTYTRALGLL 241
Query 241 GLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL 300
G+ D +I D + A+ A + + D L+ +L +LQ +P+
Sbjct 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301
Query 301 S----LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLL 356
+ + E+ ++ + A + L Y ++ G E++ + E+ RLL
Sbjct 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361
Query 357 AFRPLSID-EVTVHASSQPSELQINQLPPAADS-ETDSSSRSELQHTNNRIEPDLEGSVV 414
P + D E + + E +++ PA + S++ +E +H +P E V
Sbjct 362 L--PSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKH-----QPAREPRPV 414
Query 415 ISVISQEAE-SFEAEQVVNHTTDDCQTAKTRQNK-DVSSAVVEAEQENILVFNANSDDIV 472
++ +E + A + + T D ++R + ++ A V A ++N LV S +
Sbjct 415 LAPTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLA 474
Query 473 -GIEQNKTAVVLA 484
+ + + A VLA
Sbjct 475 RRLSEQRNADVLA 487
>P9WNT9 DNA polymerase III subunit gamma/tau [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=578
Score = 219 bits (559), Expect = 7e-66
Identities = 160/493 (32%), Positives = 256/493 (52%), Gaps = 21/493 (4%)
Query 5 LARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64
L RKYRP +F E+VGQ HV+ L+ AL+ GR++HAYLF+G RG GKT+ ARILA+ LNC
Sbjct 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query 65 TGITSTPCEVCATCKAV--NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVY 122
G T+ PC VC +C ++ N ID++E+DAAS V+DTREL D YAP Q R++V+
Sbjct 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query 123 LIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEI 182
++DE HM++T FNALLK +EEPPEH+ F+FATT+P+K+ T+ SR + R L +
Sbjct 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query 183 TSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVH--HQDVKEML 240
+ L I +E + D + + GS RD LS+ DQ +A G H + +L
Sbjct 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLA-GAADTHVTYTRALGLL 241
Query 241 GLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPEL 300
G+ D +I D + A+ A + + D L+ +L +LQ +P+
Sbjct 242 GVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLIVLQSVPDA 301
Query 301 S----LKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQGFEMCVLRLL 356
+ + E+ ++ + A + L Y ++ G E++ + E+ RLL
Sbjct 302 ASRGVVDAPEDALDRMREQAARIGRATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLL 361
Query 357 AFRPLSID-EVTVHASSQPSELQINQLPPAADS-ETDSSSRSELQHTNNRIEPDLEGSVV 414
P + D E + + E +++ PA + S++ +E +H +P E V
Sbjct 362 L--PSASDAESALLQRVERIETRLDMSIPAPQAVPRPSAAAAEPKH-----QPAREPRPV 414
Query 415 ISVISQEAE-SFEAEQVVNHTTDDCQTAKTRQNK-DVSSAVVEAEQENILVFNANSDDIV 472
++ +E + A + + T D ++R + ++ A V A ++N LV S +
Sbjct 415 LAPTPASSEPTVAAVRSMWPTVRDKVRLRSRTTEVMLAGATVRALEDNTLVLTHESAPLA 474
Query 473 -GIEQNKTAVVLA 484
+ + + A VLA
Sbjct 475 RRLSEQRNADVLA 487
>P75177 DNA polymerase III subunit gamma/tau [Mycoplasma pneumoniae
(strain ATCC 29342 / M129 / Subtype 1)]
Length=681
Score = 216 bits (549), Expect = 1e-63
Identities = 115/292 (39%), Positives = 173/292 (59%), Gaps = 2/292 (1%)
Query 1 MYQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKC 60
M +VL +KYRP F + VGQ+ + R + +A+ + +L H Y+F G RG GKTT A+I+AK
Sbjct 1 MRKVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKA 60
Query 61 LNCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFK 120
+NC C C C+A+N ID+ EIDAAS+ + D REL +NV P + + K
Sbjct 61 INC-LNWNGDVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKK 119
Query 121 VYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVD 180
VY++DE HML+ S++ LLKTLEE P++V F+FATT+ K+PIT++SRC F + + D
Sbjct 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITND 179
Query 181 EITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQG-AVHHQDVKEM 239
I L + AKE I+ DA+ ++A+ AQGSLRD LSL DQ + + + DV++
Sbjct 180 LIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKT 239
Query 240 LGLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHEL 291
L+D+ + I A+ + L+ F Q ++ L +L + +L
Sbjct 240 FNLLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDL 291
>F4HW65 Protein STICHEL-like 1 [Arabidopsis thaliana]
Length=1116
Score = 166 bits (419), Expect = 2e-45
Identities = 110/347 (32%), Positives = 180/347 (52%), Gaps = 9/347 (3%)
Query 3 QVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62
Q L++KY+P F EL+GQ+ V ++L +A+++GR+ H YLF G RG GKT+ ARIL+ LN
Sbjct 422 QSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALN 481
Query 63 CETGITST-PCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQG--RF 119
C+ PC C C G+ DL+E+DA + E R LL + Q R+
Sbjct 482 CDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRY 541
Query 120 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAV 179
KV++IDE H+L + ++ +LLK LE P + F+ TTD +P T+ SRC ++ +
Sbjct 542 KVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRD 601
Query 180 DEITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEM 239
+I L I + E ++ + A+ IA +A GSLRDA ++ +Q G+ + V E+
Sbjct 602 GDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQLSLMGK-RITVDLVNEL 660
Query 240 LGLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPE 299
+G++ + +L+ + TA + + D L++ QL S + ++ Y
Sbjct 661 VGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQLASLIMDIIAGAY-KA 719
Query 300 LSLKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSELQLSVTQEQ 346
L KYSE L + A +L + + +E QL V+ ++
Sbjct 720 LDEKYSE----AFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDR 762
>O64728 Protein STICHEL [Arabidopsis thaliana]
Length=1218
Score = 160 bits (405), Expect = 1e-43
Identities = 95/288 (33%), Positives = 154/288 (53%), Gaps = 3/288 (1%)
Query 6 ARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET 65
++KYRP F EL+GQ+ V ++L +A++R R+ YLF G RG GKT+ ARI + LNC
Sbjct 452 SQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVA 511
Query 66 GITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVP--YAPTQGRFKVYL 123
PC C C G+ D E+D A++ + R LL N+P +KV++
Sbjct 512 TEEMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFV 571
Query 124 IDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEIT 183
IDE H+L + ++ + LK LE P + V F+F TTD + +P T+ SRC +F L +I
Sbjct 572 IDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIV 631
Query 184 SHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI 243
L I + E ++ D A+ IA +A GSLRDA ++ +Q G+ + V E++G++
Sbjct 632 VRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGK-RITTALVNELVGVV 690
Query 244 DRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHEL 291
+ +L+ + TA + + D +++ QL S + ++
Sbjct 691 SDEKLLELLELALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDI 738
>F4JRP8 Protein STICHEL-like 2 [Arabidopsis thaliana]
Length=857
Score = 159 bits (402), Expect = 2e-43
Identities = 116/361 (32%), Positives = 182/361 (50%), Gaps = 23/361 (6%)
Query 5 LARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC- 63
L++K+RP++F ELVGQ V + L S + RGR+ YLF G RG GKT+ ++I A LNC
Sbjct 241 LSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALNCL 300
Query 64 ETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYL 123
S PC +C+ CK+ GR D++E D+ + R L+ + P RFKV++
Sbjct 301 SQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFI 360
Query 124 IDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEIT 183
IDE +L ++ LL +L+ +H F+ T++ +KLP V+SR ++ + +I+
Sbjct 361 IDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADIS 420
Query 184 SHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI 243
+ L I +E I+ D+ A+ IA + GSLRDA + DQ G+ K ++G++
Sbjct 421 TKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYK-LIGVV 479
Query 244 DRTIIYDLI-LAIH---QNQTARVSQLL------MQFRQQALDVSLVLDQLISTLHELAL 293
+ DL+ LA+ N R +L+ MQ Q +V ++D + E +
Sbjct 480 SDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANV--IMDIIAGNSQESSS 537
Query 294 LQYLPELSLKYSEEINQKILKLAKIVSAQDLQLYYQIACKGRSE------LQLSVTQEQG 347
L L+ SEE QK+ KI+S + L A K ++ LQLS T
Sbjct 538 ATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLR---ASKNQTTWLTVALLQLSNTDSSS 594
Query 348 F 348
F
Sbjct 595 F 595
>F4JRP0 Protein STICHEL-like 3 [Arabidopsis thaliana]
Length=1097
Score = 148 bits (373), Expect = 9e-40
Identities = 94/296 (32%), Positives = 153/296 (52%), Gaps = 3/296 (1%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
+Q L KY P+ F +L+GQN V +AL++A+ R +L Y+F G G GKT+ ARI A+ L
Sbjct 430 HQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVFHGPNGTGKTSCARIFARAL 489
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NC + PC C++C + + G+ ++ E+ E +LLD +Q +V
Sbjct 490 NCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEKIMDLLDGNVMVSSQSP-RV 548
Query 122 YLIDEVHMLSTHSFNALLKTLEE-PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVD 180
++ D+ LS+ +NAL K ++ P HV F+ + LP +ISRC +F L
Sbjct 549 FIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKLKDA 608
Query 181 EITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEML 240
+I L I +KE+IE DKDA+ IA + GSLRDA +Q GQ + V+E++
Sbjct 609 DIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 667
Query 241 GLIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQY 296
GL+ + DL+ T + L + +++ ++ QL + + ++ Y
Sbjct 668 GLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLALMSQLATVITDILAGSY 723
>F4KEM0 Protein STICHEL-like 4 [Arabidopsis thaliana]
Length=966
Score = 145 bits (365), Expect = 8e-39
Identities = 100/334 (30%), Positives = 165/334 (49%), Gaps = 13/334 (4%)
Query 2 YQVLARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
+Q +KY PR F +L+GQN V +AL++A+ + R+ Y+F G G GKT+ AR+ A+ L
Sbjct 342 HQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARAL 401
Query 62 NCETGITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
NC + S PC VC++C + ++G+ + E+ K D LLD Q + V
Sbjct 402 NCHSTEQSKPCGVCSSCVSYDDGKNRYIREM---GPVKSFDFENLLDKTNIRQQQKQQLV 458
Query 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
+ D+ +ST +N L K ++ P V F+ + LP ++SRC +F L +
Sbjct 459 LIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVD 518
Query 182 ITSHLTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
I L I +KE+I+ DKDA+ +A + GSLRDA +Q G + V+EM+G
Sbjct 519 IIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGT-RISVPLVQEMVG 577
Query 242 LIDRTIIYDLILAIHQNQTARVSQLLMQFRQQALDVSLVLDQLISTLHELALLQY---LP 298
LI + DL+ T + L + L+ ++ QL + + ++ Y
Sbjct 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKD 637
Query 299 ELSLKY------SEEINQKILKLAKIVSAQDLQL 326
+ K+ S+E +K+ + K +S + QL
Sbjct 638 QCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQL 671
Score = 24.6 bits (52), Expect = 0.28
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 0/32 (0%)
Query 441 AKTRQNKDVSSAVVEAEQENILVFNANSDDIV 472
+K R NK V+ A+V+ + + +SDD+V
Sbjct 140 SKDRINKKVNEAIVKTLSDQLNEVGGDSDDLV 171
Score = 23.9 bits (50), Expect = 0.48
Identities = 18/76 (24%), Positives = 37/76 (49%), Gaps = 11/76 (14%)
Query 526 TQPISDSSSEESSLDALADDESTPLIDLSIDTNEHKVQVTSAANDLEVMPQDILKLAEQE 585
T SDSSS +D E+ PL+ +D+ +++ V + +L + ++LK +
Sbjct 280 TPMFSDSSS--------SDREALPLL---VDSADNEEWVHDYSGELGIFADNLLKNGKDS 328
Query 586 LEGEWTLEKWEYWFRT 601
+ G+ + K W ++
Sbjct 329 VIGKKSSRKNTRWHQS 344
>Q9UXF5 Replication factor C small subunit [Saccharolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)]
Length=330
Score = 80.9 bits (198), Expect = 2e-19
Identities = 84/313 (27%), Positives = 145/313 (46%), Gaps = 25/313 (8%)
Query 6 ARKYRPRNFIELVGQNHVSRALTSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET 65
A KYRP+ ++V Q + L ++ + H LF G G GKTT A L L +
Sbjct 11 AEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHL-LFAGPPGTGKTTAALALVHDLYGDN 69
Query 66 GITSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLID 125
T E+ A+ + R ID+I R KV++ + P FKV L+D
Sbjct 70 -YTEYFLELNAS-----DERGIDVI------RNKVKEFARTV-----IPGDIPFKVVLLD 112
Query 126 EVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITSH 185
E ++ + AL +T+E E+ +F+ A K+ + SR F PL +++ +
Sbjct 113 EADNMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNR 172
Query 186 LTTILAKEQIEADKDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLIDR 245
L I E+ E D+ A+ I + G +R ++++ A AYG+ +V + V ++LGL
Sbjct 173 LIYIAKNEKAEYDQKALETIYDITMGDMRKSINILQAASAYGKISV--EAVFKVLGLAQP 230
Query 246 TIIYDLI-LAIHQNQTA---RVSQLLMQFRQQALDVSLVLDQLISTLHELALLQYLPELS 301
+ ++I LA+ T ++ LL+ + D+ + + I T E+ + + L L
Sbjct 231 KEVREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREI-TSSEIQISEELRVLL 289
Query 302 LKYSEEINQKILK 314
L Y E +I++
Sbjct 290 LDYIGETEFRIIE 302
Lambda K H a alpha
0.317 0.131 0.367 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7290092
Database: a35683ae0f068fb83565ec2bb0a9a766.SwissProt.fasta
Posted date: May 30, 2024 7:07 AM
Number of letters in database: 12,226
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
