BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 4d88ce8fc8445e8bcfa7f9a75e5e147d.SwissProt.fasta
           22 sequences; 4,449 total letters



Query= ACIAD1973

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q8YFY3 HTH-type transcriptional regulator BetI [Brucella melitens...  53.5    2e-12
C0RHQ4 HTH-type transcriptional regulator BetI [Brucella melitens...  53.5    2e-12
A9M9H9 HTH-type transcriptional regulator BetI [Brucella canis (s...  53.5    2e-12
Q57EH9 HTH-type transcriptional regulator BetI [Brucella abortus ...  53.1    3e-12
Q2YMS6 HTH-type transcriptional regulator BetI [Brucella abortus ...  53.1    3e-12
B0CKN5 HTH-type transcriptional regulator BetI [Brucella suis (st...  53.1    3e-12
Q8G1Z7 HTH-type transcriptional regulator BetI [Brucella suis bio...  52.8    4e-12
A6X2G6 HTH-type transcriptional regulator BetI [Brucella anthropi...  47.8    2e-10
Q8UH57 HTH-type transcriptional regulator BetI [Agrobacterium fab...  42.7    1e-08
P67433 Uncharacterized HTH-type transcriptional regulator Mb0790c...  40.8    6e-08
P9WMD7 Uncharacterized HTH-type transcriptional regulator Rv0767c...  40.8    6e-08
P9WMD6 Uncharacterized HTH-type transcriptional regulator MT0791 ...  40.8    6e-08
O34892 Uncharacterized HTH-type transcriptional regulator YobS [B...  39.3    2e-07
Q88N29 Probable HTH-type transcriptional regulator TtgR [Pseudomo...  38.1    5e-07
Q9KJC4 Probable HTH-type transcriptional regulator ArpR [Pseudomo...  38.1    5e-07
P22645 Uncharacterized HTH-type transcriptional regulator in dhlA...  37.4    9e-07
Q9R9T9 HTH-type transcriptional regulator SrpR [Pseudomonas putida]   37.0    1e-06
Q9AIU0 HTH-type transcriptional regulator TtgR [Pseudomonas putid...  36.6    2e-06
Q93PU7 Uncharacterized HTH-type transcriptional regulator TtgW [P...  34.3    6e-06
P51562 Tetracycline repressor protein class H [Photobacterium dam...  34.7    8e-06
P0ACT5 Tetracycline repressor protein class D [Salmonella ordonez]    34.7    8e-06
P0ACT4 Tetracycline repressor protein class D [Escherichia coli]      34.7    8e-06


>Q8YFY3 HTH-type transcriptional regulator BetI [Brucella melitensis 
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094)]
Length=198

 Score = 53.5 bits (127),  Expect = 2e-12
 Identities = 56/189 (30%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNAAIKQANTPHERIAAIIAVNFSATQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>C0RHQ4 HTH-type transcriptional regulator BetI [Brucella melitensis 
biotype 2 (strain ATCC 23457)]
Length=198

 Score = 53.5 bits (127),  Expect = 2e-12
 Identities = 56/189 (30%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNAAIKQANTPHERIAAIIAVNFSATQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>A9M9H9 HTH-type transcriptional regulator BetI [Brucella canis 
(strain ATCC 23365 / NCTC 10854)]
Length=198

 Score = 53.5 bits (127),  Expect = 2e-12
 Identities = 56/189 (30%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNAAIKQANTPHERIAAIIAVNFSAAQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>Q57EH9 HTH-type transcriptional regulator BetI [Brucella abortus 
biovar 1 (strain 9-941)]
Length=198

 Score = 53.1 bits (126),  Expect = 3e-12
 Identities = 56/189 (30%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNVAIKQANTPHERIAAIIAVNFSATQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>Q2YMS6 HTH-type transcriptional regulator BetI [Brucella abortus 
(strain 2308)]
Length=198

 Score = 53.1 bits (126),  Expect = 3e-12
 Identities = 56/189 (30%), Positives = 76/189 (40%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNVAIKQANTPHERIAAIIAVNFSATQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>B0CKN5 HTH-type transcriptional regulator BetI [Brucella suis 
(strain ATCC 23445 / NCTC 10510)]
Length=198

 Score = 53.1 bits (126),  Expect = 3e-12
 Identities = 43/132 (33%), Positives = 55/132 (42%), Gaps = 4/132 (3%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL----KAEVFIELM  66
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       +  EL 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  67   DQLTEVEKQMQTSNSFERLSLLLGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
              L    KQ  T +      + + F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNAAIKQANTPHERIAAIIAVNFSAAQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQ  138
            R HS LV A+EQ
Sbjct  130  RLHSNLVFALEQ  141


>Q8G1Z7 HTH-type transcriptional regulator BetI [Brucella suis 
biovar 1 (strain 1330)]
Length=198

 Score = 52.8 bits (125),  Expect = 4e-12
 Identities = 55/189 (29%), Positives = 83/189 (44%), Gaps = 12/189 (6%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQL-  69
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       L+ +L 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  70   TEVEKQMQTSNS-FERLSLLL--GFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
             ++   ++ +N+  ER++ ++   F   +  Q  +  W    V   Q  +IKR   I   
Sbjct  70   RDLNAAIKQANAPHERIAAIIAVNFSAAQFAQETIAAWLTFYVHAQQSDDIKRLLRIYAR  129

Query  127  RWHSTLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQLGLNGLDAHSFKHH  186
            R HS LV A+EQ        L   +    IA    A + G+   + LG +  DA S    
Sbjct  130  RLHSNLVFALEQ--------LTSRARANRIAEGAGAMIDGLYIRHALGADAPDAASAIAL  181

Query  187  VEIMLDMEL  195
            VE  + ++L
Sbjct  182  VEDYIAIQL  190


>A6X2G6 HTH-type transcriptional regulator BetI [Brucella anthropi 
(strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 
/ LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)]
Length=194

 Score = 47.8 bits (112),  Expect = 2e-10
 Identities = 40/132 (30%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQLT  70
            RR  +IDAA     Q G   +TV +IA EA VS    HH+F     L       L+ +L 
Sbjct  10   RRRELIDAAIRTIGQRGSLDVTVAQIAHEAGVSPALAHHYFGGKDKLILATMRHLLRELG  69

Query  71   EVEKQM--QTSNSFERLSLLL--GFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
            +       +T    ER++ ++   F   +  Q  +  W    V   Q  + +R   I   
Sbjct  70   QDLNAAIGRTETPRERIAAIIAVNFSASQFAQETIAAWLTFYVHAQQSEDTRRLLRIYAR  129

Query  127  RWHSTLVNAIEQ  138
            R HS LV A+EQ
Sbjct  130  RLHSNLVFALEQ  141


>Q8UH57 HTH-type transcriptional regulator BetI [Agrobacterium 
fabrum (strain C58 / ATCC 33970)]
Length=206

 Score = 42.7 bits (99),  Expect = 1e-08
 Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 4/132 (3%)

Query  11   RRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQLT  70
            RR  ++DAA       G   +T+  IA EA VS    HH+F S   L  E    L+  L 
Sbjct  10   RRKALVDAALRTIGHHGSLNVTMSDIAREAGVSAALAHHYFGSKQQLLLETIRSLLRDLR  69

Query  71   E--VEKQMQTSNSFERLSLL--LGFENLEQTQPYLRLWNEAEVLIDQDIEIKRAYNITME  126
               V   ++ S   E+LS +  + F++ + T   +  W    V   +  E +R   I   
Sbjct  70   RDAVAALIRASGPREKLSAIVHVSFQSDQFTPETVAAWLAFYVEAQRSEETRRLLVIYSR  129

Query  127  RWHSTLVNAIEQ  138
            R  S L+ ++ +
Sbjct  130  RLRSNLMASLNR  141


>P67433 Uncharacterized HTH-type transcriptional regulator Mb0790c 
[Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)]
Length=213

 Score = 40.8 bits (94),  Expect = 6e-08
 Identities = 26/93 (28%), Positives = 48/93 (52%), Gaps = 7/93 (8%)

Query  7    NREQRRAM--IIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIE  64
            NR Q+     ++ AA     +     LTVR +A  A+V+    + +F S +HL AEV+++
Sbjct  25   NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD  84

Query  65   LMDQL-----TEVEKQMQTSNSFERLSLLLGFE  92
            L+ Q+       V   ++ ++S   L+L++  E
Sbjct  85   LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADE  117


>P9WMD7 Uncharacterized HTH-type transcriptional regulator Rv0767c 
[Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)]
Length=213

 Score = 40.8 bits (94),  Expect = 6e-08
 Identities = 26/93 (28%), Positives = 48/93 (52%), Gaps = 7/93 (8%)

Query  7    NREQRRAM--IIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIE  64
            NR Q+     ++ AA     +     LTVR +A  A+V+    + +F S +HL AEV+++
Sbjct  25   NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD  84

Query  65   LMDQL-----TEVEKQMQTSNSFERLSLLLGFE  92
            L+ Q+       V   ++ ++S   L+L++  E
Sbjct  85   LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADE  117


>P9WMD6 Uncharacterized HTH-type transcriptional regulator MT0791 
[Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)]
Length=213

 Score = 40.8 bits (94),  Expect = 6e-08
 Identities = 26/93 (28%), Positives = 48/93 (52%), Gaps = 7/93 (8%)

Query  7    NREQRRAM--IIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIE  64
            NR Q+     ++ AA     +     LTVR +A  A+V+    + +F S +HL AEV+++
Sbjct  25   NRRQQATFRKVLAAAMATLREKSYADLTVRLVAARAKVAPATAYTYFSSKNHLIAEVYLD  84

Query  65   LMDQL-----TEVEKQMQTSNSFERLSLLLGFE  92
            L+ Q+       V   ++ ++S   L+L++  E
Sbjct  85   LVRQVPCVTDVNVPMPIRVTSSLRHLALVVADE  117


>O34892 Uncharacterized HTH-type transcriptional regulator YobS 
[Bacillus subtilis (strain 168)]
Length=191

 Score = 39.3 bits (90),  Expect = 2e-07
 Identities = 18/62 (29%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query  14  MIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFI----ELMDQL  69
           MI+DAA E+A Q+G+NG+++  ++ +  V    +++H      ++AE+ +    +L DQ+
Sbjct  11  MIVDAAAEIADQEGVNGVSLAALSKKMNVRPPSLYNHINGLQAIRAELAVRGLTKLFDQM  70

Query  70  TE  71
            +
Sbjct  71  AD  72


>Q88N29 Probable HTH-type transcriptional regulator TtgR [Pseudomonas 
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 
11950 / KT2440)]
Length=210

 Score = 38.1 bits (87),  Expect = 5e-07
 Identities = 46/187 (25%), Positives = 79/187 (42%), Gaps = 26/187 (14%)

Query  9    EQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQ  68
            ++ RA II+AA+    + G+   T+  IA  A V+ G ++ HF +    KAE+   L+D 
Sbjct  10   QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNN----KAELVQALLDS  65

Query  69   LTEVEKQMQTSNSFE---------RLSLLLGFENL---EQTQPYLRLWNEAEVLIDQDIE  116
            L E    +  ++  E         R  LL  F  L    +T+    + +      D   E
Sbjct  66   LHETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCE  125

Query  117  IKRAYNITMERWHS----TLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQ  172
            I++     +   H      L NA+ +G       LP    ++  A  + A+V G+ G + 
Sbjct  126  IRQQRQSAVLDCHKGITLALANAVRRG------QLPGELDVERAAVAMFAYVDGLIGRWL  179

Query  173  LGLNGLD  179
            L  + +D
Sbjct  180  LLPDSVD  186


 Score = 19.6 bits (39),  Expect = 0.67
 Identities = 19/80 (24%), Positives = 35/80 (44%), Gaps = 2/80 (3%)

Query  8    REQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFI-ELM  66
            R+QR++ ++D  K + L    N +   ++  E  V    V         +   + + + +
Sbjct  127  RQQRQSAVLDCHKGITLALA-NAVRRGQLPGELDVERAAVAMFAYVDGLIGRWLLLPDSV  185

Query  67   DQLTEVEKQMQTSNSFERLS  86
            D L +VEK + T     RLS
Sbjct  186  DLLGDVEKWVDTGLDMLRLS  205


 Score = 18.5 bits (36),  Expect = 1.6
 Identities = 21/85 (25%), Positives = 38/85 (45%), Gaps = 7/85 (8%)

Query  33   VRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMD--QLTEVEK---QMQTSNSFERLSL  87
            VRR   EAQ +  Q+    + + + +      L D  +L  V +       +N  E +  
Sbjct  2    VRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQA  61

Query  88   LLGFENLEQTQPYLRLWNEAEVLID  112
            LL  ++L +T  +L   +E+E  +D
Sbjct  62   LL--DSLHETHDHLARASESEDELD  84


>Q9KJC4 Probable HTH-type transcriptional regulator ArpR [Pseudomonas 
putida]
Length=210

 Score = 38.1 bits (87),  Expect = 5e-07
 Identities = 46/187 (25%), Positives = 79/187 (42%), Gaps = 26/187 (14%)

Query  9    EQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQ  68
            ++ RA II+AA+    + G+   T+  IA  A V+ G ++ HF +    KAE+   L+D 
Sbjct  10   QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNN----KAELVQALLDS  65

Query  69   LTEVEKQMQTSNSFE---------RLSLLLGFENL---EQTQPYLRLWNEAEVLIDQDIE  116
            L E    +  ++  E         R  LL  F  L    +T+    + +      D   E
Sbjct  66   LHETHDHLARASESEDELDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCE  125

Query  117  IKRAYNITMERWHS----TLVNAIEQGMENHEFSLPLHSPIKDIAWRLIAFVCGMEGIYQ  172
            I++     +   H      L NA+ +G       LP    ++  A  + A+V G+ G + 
Sbjct  126  IRQQRQSAVLDCHKGITLALANAVRRG------QLPGELDVERAAVAMFAYVDGLIGRWL  179

Query  173  LGLNGLD  179
            L  + +D
Sbjct  180  LLPDSVD  186


 Score = 19.6 bits (39),  Expect = 0.67
 Identities = 19/80 (24%), Positives = 35/80 (44%), Gaps = 2/80 (3%)

Query  8    REQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFI-ELM  66
            R+QR++ ++D  K + L    N +   ++  E  V    V         +   + + + +
Sbjct  127  RQQRQSAVLDCHKGITLALA-NAVRRGQLPGELDVERAAVAMFAYVDGLIGRWLLLPDSV  185

Query  67   DQLTEVEKQMQTSNSFERLS  86
            D L +VEK + T     RLS
Sbjct  186  DLLGDVEKWVDTGLDMLRLS  205


 Score = 18.5 bits (36),  Expect = 1.6
 Identities = 21/85 (25%), Positives = 38/85 (45%), Gaps = 7/85 (8%)

Query  33   VRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMD--QLTEVEK---QMQTSNSFERLSL  87
            VRR   EAQ +  Q+    + + + +      L D  +L  V +       +N  E +  
Sbjct  2    VRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQA  61

Query  88   LLGFENLEQTQPYLRLWNEAEVLID  112
            LL  ++L +T  +L   +E+E  +D
Sbjct  62   LL--DSLHETHDHLARASESEDELD  84


>P22645 Uncharacterized HTH-type transcriptional regulator in 
dhlA 5'region [Xanthobacter autotrophicus]
Length=202

 Score = 37.4 bits (85),  Expect = 9e-07
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 0/54 (0%)

Query  4   NYLNREQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHL  57
           N + +  +   I+D A E+   +G  GLT+R++AT+A +S   V ++F+S   L
Sbjct  9   NGMKQNAKTERILDVALELLETEGEFGLTMRQVATQADMSLSNVQYYFKSEDLL  62


 Score = 18.1 bits (35),  Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (46%), Gaps = 0/35 (0%)

Query  47   VHHHFQSSSHLKAEVFIELMDQLTEVEKQMQTSNS  81
            VH + +S     AEV  E +  L   EK +  + S
Sbjct  128  VHGYLKSYYRDLAEVMAEKLAPLASSEKALAVAVS  162


>Q9R9T9 HTH-type transcriptional regulator SrpR [Pseudomonas putida]
Length=213

 Score = 37.0 bits (84),  Expect = 1e-06
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 0/43 (0%)

Query  9   EQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHF  51
           E+ R  IIDAA EV +  G++  T+ +IA +A V+ G V+ HF
Sbjct  10  EETRQRIIDAALEVFVAQGVSDATLDQIARKAGVTRGAVYWHF  52


>Q9AIU0 HTH-type transcriptional regulator TtgR [Pseudomonas putida 
(strain DOT-T1E)]
Length=210

 Score = 36.6 bits (83),  Expect = 2e-06
 Identities = 23/75 (31%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query  9   EQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMDQ  68
           ++ RA II+AA+    + G+   T+  IA  A V+ G ++ HF +    KAE+   L+D 
Sbjct  10  QETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNN----KAELVQALLDS  65

Query  69  LTEVEKQMQTSNSFE  83
           L E    +  ++  E
Sbjct  66  LHETHDHLARASESE  80


 Score = 19.6 bits (39),  Expect = 0.67
 Identities = 18/80 (23%), Positives = 35/80 (44%), Gaps = 2/80 (3%)

Query  8    REQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVFI-ELM  66
            R+QR++ ++D  K + L    N +   ++  E       V         ++  + + + +
Sbjct  127  RQQRQSAVLDCHKGITLALA-NAVRRGQLPGELDAERAAVAMFAYVDGLIRRWLLLPDSV  185

Query  67   DQLTEVEKQMQTSNSFERLS  86
            D L +VEK + T     RLS
Sbjct  186  DLLGDVEKWVDTGLDMLRLS  205


 Score = 18.9 bits (37),  Expect = 1.2
 Identities = 21/85 (25%), Positives = 38/85 (45%), Gaps = 7/85 (8%)

Query  33   VRRIATEAQVSTGQVHHHFQSSSHLKAEVFIELMD--QLTEVEK---QMQTSNSFERLSL  87
            VRR   EAQ +  Q+    + + + +      L D  +L  V +       +N  E +  
Sbjct  2    VRRTKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQA  61

Query  88   LLGFENLEQTQPYLRLWNEAEVLID  112
            LL  ++L +T  +L   +E+E  +D
Sbjct  62   LL--DSLHETHDHLARASESEDEVD  84


>Q93PU7 Uncharacterized HTH-type transcriptional regulator TtgW 
[Pseudomonas putida (strain DOT-T1E)]
Length=134

 Score = 34.3 bits (77),  Expect = 6e-06
 Identities = 18/43 (42%), Positives = 27/43 (63%), Gaps = 0/43 (0%)

Query  9   EQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHF  51
           ++ R  IIDAA EV +  G+   T+ +IA +A V+ G V+ HF
Sbjct  10  KETRQRIIDAALEVFVAQGVPDATLDQIARKAGVTRGAVYWHF  52


>P51562 Tetracycline repressor protein class H [Photobacterium 
damsela subsp. piscicida]
Length=218

 Score = 34.7 bits (78),  Expect = 8e-06
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query  3   MNYLNREQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVF  62
           M  LNRE     +IDAA E+  + G++GLT R++A +  +    ++ H ++   L   + 
Sbjct  1   MARLNRES----VIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALA  56

Query  63  IELM  66
           +E++
Sbjct  57  VEIL  60


 Score = 17.3 bits (33),  Expect = 3.8
 Identities = 6/14 (43%), Positives = 10/14 (71%), Gaps = 0/14 (0%)

Query  135  AIEQGMENHEFSLP  148
            A+E    +H++SLP
Sbjct  56   AVEILARHHDYSLP  69


>P0ACT5 Tetracycline repressor protein class D [Salmonella ordonez]
Length=218

 Score = 34.7 bits (78),  Expect = 8e-06
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query  3   MNYLNREQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVF  62
           M  LNRE     +IDAA E+  + G++GLT R++A +  +    ++ H ++   L   + 
Sbjct  1   MARLNRES----VIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALA  56

Query  63  IELM  66
           +E++
Sbjct  57  VEIL  60


 Score = 17.3 bits (33),  Expect = 3.8
 Identities = 6/14 (43%), Positives = 10/14 (71%), Gaps = 0/14 (0%)

Query  135  AIEQGMENHEFSLP  148
            A+E    +H++SLP
Sbjct  56   AVEILARHHDYSLP  69


>P0ACT4 Tetracycline repressor protein class D [Escherichia coli]
Length=218

 Score = 34.7 bits (78),  Expect = 8e-06
 Identities = 19/64 (30%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query  3   MNYLNREQRRAMIIDAAKEVALQDGLNGLTVRRIATEAQVSTGQVHHHFQSSSHLKAEVF  62
           M  LNRE     +IDAA E+  + G++GLT R++A +  +    ++ H ++   L   + 
Sbjct  1   MARLNRES----VIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALA  56

Query  63  IELM  66
           +E++
Sbjct  57  VEIL  60


 Score = 17.3 bits (33),  Expect = 3.8
 Identities = 6/14 (43%), Positives = 10/14 (71%), Gaps = 0/14 (0%)

Query  135  AIEQGMENHEFSLP  148
            A+E    +H++SLP
Sbjct  56   AVEILARHHDYSLP  69



Lambda      K        H        a         alpha
   0.324    0.136    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 567520


  Database: 4d88ce8fc8445e8bcfa7f9a75e5e147d.SwissProt.fasta
    Posted date:  May 31, 2024  11:32 AM
  Number of letters in database: 4,449
  Number of sequences in database:  22



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40