BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6f2548bfe0278a87f4a86a78bec5ddb0.SwissProt.fasta
24 sequences; 8,324 total letters
Query= ACIAD2012
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
Q46866 Probable transcriptional regulator YgiV [Escherichia coli ... 137 2e-43
Q8XBS4 Probable transcriptional regulator YgiV [Escherichia coli ... 133 8e-42
P0ACI2 Right origin-binding protein [Shigella flexneri] 78.2 7e-20
P0ACI1 Right origin-binding protein [Escherichia coli O157:H7] 78.2 7e-20
P0ACI0 Right origin-binding protein [Escherichia coli (strain K12)] 78.2 7e-20
O31456 Uncharacterized HTH-type transcriptional regulator YbfP [B... 77.8 1e-19
Q936F1 Uncharacterized HTH-type transcriptional regulator [Staphy... 74.3 5e-18
Q6GKK1 Uncharacterized HTH-type transcriptional regulator SAR0107... 73.9 7e-18
Q6GD21 Uncharacterized HTH-type transcriptional regulator SAS0078... 73.9 7e-18
Q7A882 Uncharacterized HTH-type transcriptional regulator SA0097 ... 73.9 7e-18
Q99XB1 Uncharacterized HTH-type transcriptional regulator SAV0101... 73.9 7e-18
Q8NYT6 Uncharacterized HTH-type transcriptional regulator MW0077 ... 73.9 7e-18
Q5HJR8 Uncharacterized HTH-type transcriptional regulator SACOL00... 73.2 1e-17
P28816 Transposon Tn10 TetD protein [Escherichia coli] 65.1 3e-16
P96662 Uncharacterized HTH-type transcriptional regulator YdeE [B... 67.8 3e-16
Q56143 Regulatory protein SoxS [Salmonella typhimurium (strain LT... 62.0 2e-15
Q48413 Transcriptional activator RamA [Klebsiella pneumoniae] 60.8 5e-15
P55922 Transcriptional activator RamA [Enterobacter cloacae] 60.8 5e-15
P0A9E2 Regulatory protein SoxS [Escherichia coli (strain K12)] 59.7 1e-14
P0A2S4 Multiple antibiotic resistance protein MarA [Salmonella ty... 57.4 1e-13
P0A2S6 Multiple antibiotic resistance protein MarA [Salmonella en... 57.4 1e-13
Q51872 Probable transcriptional regulator LumQ [Photobacterium le... 58.9 2e-13
P43463 HTH-type transcriptional activator AarP [Providencia stuar... 55.8 5e-13
Q52620 Regulatory protein PqrA [Proteus vulgaris] 55.5 6e-13
>Q46866 Probable transcriptional regulator YgiV [Escherichia coli
(strain K12)]
Length=160
Score = 137 bits (345), Expect = 2e-43
Identities = 68/158 (43%), Positives = 95/158 (60%), Gaps = 0/158 (0%)
Query 125 SELKMNVTIIERPVEKIAYISHQGSPEKVFETAAKFIEWRKRTGLSPVKTSATYGIPFSD 184
+ L ++V II+ P +A + H+ SPE + + AKFI WRK TGLSPV S T+G+ + D
Sbjct 2 TNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61
Query 185 PEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIPAGRYAMVRHWGSHDYIRDSVYFLFRN 244
P T + FRFDI GS+++ I N G+ E+ GRYA+ RH G D I +V+ + R+
Sbjct 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTVWGIIRH 121
Query 245 WLPAQQEEAGDYPVFFHYHNFVHEVKEADLVTDIYLLL 282
WLPA E+ P+ FHY N V E L TD+Y+ L
Sbjct 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPL 159
>Q8XBS4 Probable transcriptional regulator YgiV [Escherichia coli
O157:H7]
Length=160
Score = 133 bits (334), Expect = 8e-42
Identities = 65/158 (41%), Positives = 94/158 (59%), Gaps = 0/158 (0%)
Query 125 SELKMNVTIIERPVEKIAYISHQGSPEKVFETAAKFIEWRKRTGLSPVKTSATYGIPFSD 184
+ L ++V II+ P +A + H+ PE + + AKFI WRK TGLSPV S T+G+ + D
Sbjct 2 TNLTLDVNIIDFPSIPVAMLPHRCRPELLNYSVAKFIMWRKETGLSPVNQSQTFGVAWDD 61
Query 185 PEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIPAGRYAMVRHWGSHDYIRDSVYFLFRN 244
P T + FRFDI GS+++ I N G+ E+ GRYA+ RH G D I +++ + R+
Sbjct 62 PATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVARHVGELDDISHTIWGIIRH 121
Query 245 WLPAQQEEAGDYPVFFHYHNFVHEVKEADLVTDIYLLL 282
WLPA E+ P+ FHY N V E L T++Y+ L
Sbjct 122 WLPASGEKMRKAPILFHYTNLAEGVTEQRLETNVYVPL 159
>P0ACI2 Right origin-binding protein [Shigella flexneri]
Length=289
Score = 78.2 bits (191), Expect = 7e-20
Identities = 69/275 (25%), Positives = 126/275 (46%), Gaps = 40/275 (15%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS--FQLVFKP 71
+++ HLD+ LSL ++ AG S++H R+F G I Y + RL +++ +L +P
Sbjct 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72
Query 72 EVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWH-----RKFVYFTPESE 126
+++IAL FDS + F RAFK+ F QTP+ +R P W + R + PE +
Sbjct 73 ---ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129
Query 127 LKMNVTIIERPVEKIAYISHQGSPEKV--FETAAKFIEWRKRTGLSPVKTSATYGIPFSD 184
VT+ + P+ + S+ S E++ F ++ W G +P YG+ +
Sbjct 130 F---VTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185
Query 185 PEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIP----AGRYAMVRHWGSHDYIRDSVYF 240
P Q +K+ ++ + + DQ +G ++ P G Y M + G +++ +
Sbjct 186 PSQ--DKDDEQEVFYTTALAQDQ-ADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242
Query 241 LF-----------------RNWLPAQQEEAGDYPV 258
++ + PA+ +AGD P+
Sbjct 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277
>P0ACI1 Right origin-binding protein [Escherichia coli O157:H7]
Length=289
Score = 78.2 bits (191), Expect = 7e-20
Identities = 69/275 (25%), Positives = 126/275 (46%), Gaps = 40/275 (15%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS--FQLVFKP 71
+++ HLD+ LSL ++ AG S++H R+F G I Y + RL +++ +L +P
Sbjct 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72
Query 72 EVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWH-----RKFVYFTPESE 126
+++IAL FDS + F RAFK+ F QTP+ +R P W + R + PE +
Sbjct 73 ---ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129
Query 127 LKMNVTIIERPVEKIAYISHQGSPEKV--FETAAKFIEWRKRTGLSPVKTSATYGIPFSD 184
VT+ + P+ + S+ S E++ F ++ W G +P YG+ +
Sbjct 130 F---VTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185
Query 185 PEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIP----AGRYAMVRHWGSHDYIRDSVYF 240
P Q +K+ ++ + + DQ +G ++ P G Y M + G +++ +
Sbjct 186 PSQ--DKDDEQEVFYTTALAQDQ-ADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242
Query 241 LF-----------------RNWLPAQQEEAGDYPV 258
++ + PA+ +AGD P+
Sbjct 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277
>P0ACI0 Right origin-binding protein [Escherichia coli (strain
K12)]
Length=289
Score = 78.2 bits (191), Expect = 7e-20
Identities = 69/275 (25%), Positives = 126/275 (46%), Gaps = 40/275 (15%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS--FQLVFKP 71
+++ HLD+ LSL ++ AG S++H R+F G I Y + RL +++ +L +P
Sbjct 13 WLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARP 72
Query 72 EVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWH-----RKFVYFTPESE 126
+++IAL FDS + F RAFK+ F QTP+ +R P W + R + PE +
Sbjct 73 ---ILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEFTMPEHK 129
Query 127 LKMNVTIIERPVEKIAYISHQGSPEKV--FETAAKFIEWRKRTGLSPVKTSATYGIPFSD 184
VT+ + P+ + S+ S E++ F ++ W G +P YG+ +
Sbjct 130 F---VTLEDTPLIGVTQ-SYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETR 185
Query 185 PEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIP----AGRYAMVRHWGSHDYIRDSVYF 240
P Q +K+ ++ + + DQ +G ++ P G Y M + G +++ +
Sbjct 186 PSQ--DKDDEQEVFYTTALAQDQ-ADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILT 242
Query 241 LF-----------------RNWLPAQQEEAGDYPV 258
++ + PA+ +AGD P+
Sbjct 243 VYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRPI 277
>O31456 Uncharacterized HTH-type transcriptional regulator YbfP
[Bacillus subtilis (strain 168)]
Length=295
Score = 77.8 bits (190), Expect = 1e-19
Identities = 37/103 (36%), Positives = 64/103 (62%), Gaps = 1/103 (1%)
Query 4 YDLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRA 63
Y+ ++ ++I+ HL E +S + + V+ S+FHFHRIF +GM++ Y ++ RL A
Sbjct 3 YEKAVQKTINWIESHLHEQISNEDIVNVSSFSKFHFHRIFQKEVGMSVASYIRLRRLANA 62
Query 64 SFQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
+ L++ + ++I+IAL F+S EAF R FK+ + P A+R
Sbjct 63 AAALLY-TDHRIIDIALYYQFESQEAFTRTFKKMYHMPPGAYR 104
>Q936F1 Uncharacterized HTH-type transcriptional regulator [Staphylococcus
aureus]
Length=745
Score = 74.3 bits (181), Expect = 5e-18
Identities = 40/102 (39%), Positives = 54/102 (53%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E+ + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDEM-ITDIALQNGFSSAASFARTFKHITHQTPKQYR 254
>Q6GKK1 Uncharacterized HTH-type transcriptional regulator SAR0107
[Staphylococcus aureus (strain MRSA252)]
Length=745
Score = 73.9 bits (180), Expect = 7e-18
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFAESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>Q6GD21 Uncharacterized HTH-type transcriptional regulator SAS0078
[Staphylococcus aureus (strain MSSA476)]
Length=745
Score = 73.9 bits (180), Expect = 7e-18
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>Q7A882 Uncharacterized HTH-type transcriptional regulator SA0097
[Staphylococcus aureus (strain N315)]
Length=745
Score = 73.9 bits (180), Expect = 7e-18
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>Q99XB1 Uncharacterized HTH-type transcriptional regulator SAV0101
[Staphylococcus aureus (strain Mu50 / ATCC 700699)]
Length=745
Score = 73.9 bits (180), Expect = 7e-18
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>Q8NYT6 Uncharacterized HTH-type transcriptional regulator MW0077
[Staphylococcus aureus (strain MW2)]
Length=745
Score = 73.9 bits (180), Expect = 7e-18
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFQHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>Q5HJR8 Uncharacterized HTH-type transcriptional regulator SACOL0084
[Staphylococcus aureus (strain COL)]
Length=745
Score = 73.2 bits (178), Expect = 1e-17
Identities = 40/102 (39%), Positives = 53/102 (52%), Gaps = 1/102 (1%)
Query 5 DLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRAS 64
D K+ VCDYI+ H E LSL +LSE G S H + F LG+ + R++ A
Sbjct 154 DDKVNQVCDYIELHFHEDLSLSELSEYVGWSESHLSKKFTESLGVGFHHFLNTTRIEHAK 213
Query 65 FQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
L + E + +IAL GF S +FAR FK QTP +R
Sbjct 214 LDLTYTDET-ITDIALQNGFSSAASFARTFKHFTHQTPKQYR 254
>P28816 Transposon Tn10 TetD protein [Escherichia coli]
Length=138
Score = 65.1 bits (157), Expect = 3e-16
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 1/105 (1%)
Query 8 LKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQL 67
+K V +I+ +LD++L L ++ AG ++++F R+F G+ + Y + RL +A+ +L
Sbjct 30 IKDVLLWIEHNLDQSLLLDDVANKAGYTKWYFQRLFKKVTGVTLASYIRARRLTKAAVEL 89
Query 68 VFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQ 112
+ ++EIAL FDS ++F R FK F TPS +R W+
Sbjct 90 RLTKKT-ILEIALKYQFDSQQSFTRRFKYIFKVTPSYYRRNKLWE 133
>P96662 Uncharacterized HTH-type transcriptional regulator YdeE
[Bacillus subtilis (strain 168)]
Length=290
Score = 67.8 bits (164), Expect = 3e-16
Identities = 64/259 (25%), Positives = 115/259 (44%), Gaps = 22/259 (8%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQLVFKPEV 73
YI+++L + Q+ +++A S +HF R+F G+++ +Y + RL A+F+L V
Sbjct 13 YIEENLTNDIDFQEAAKLAFCSEYHFKRMFSFLAGISLSEYIRRRRLTLAAFELK-DSNV 71
Query 74 KVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVE-PNWQNWHRKFVYFTPESELKMNVT 132
KVI+IA+ G++SP++FARAF+ PS R + + + R T + +MN
Sbjct 72 KVIDIAIKYGYNSPDSFARAFQNLHGINPSKARFNGHSLKAYPRMTFQLTIKGGNEMNYR 131
Query 133 IIERPVEKIAYISHQ-------------GSPEKVFETAAKFIEWRKRTGLSPVKTSATYG 179
I E+ +I I + E + E A ++ S + +++T
Sbjct 132 IEEKEAFRIVGIKKRVPIIFKGINPEIASMWESLDEKAINKLKELSNVAPSGLISAST-- 189
Query 180 IPFSDPEQTPEKEFRFDIAGSITKSIDQNNEGIEMSEIPAGRYAMVRHWGSH-DYIRDSV 238
FS+ E I + TK N E+PA +A+ G D +++
Sbjct 190 -NFSEGRTEENGELDHYIGAATTKRCPDN---FSRLEVPASTWAVFESIGPFPDTLQEVW 245
Query 239 YFLFRNWLPAQQEEAGDYP 257
++ W P+ E + P
Sbjct 246 GRIYSEWFPSSNYEQIEGP 264
>Q56143 Regulatory protein SoxS [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=107
Score = 62.0 bits (149), Expect = 2e-15
Identities = 29/99 (29%), Positives = 61/99 (62%), Gaps = 1/99 (1%)
Query 8 LKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQL 67
++ + ++I +H+D+ L++ +++ +G S+++ R+F + +Y + RL A+ +L
Sbjct 7 IQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVEL 66
Query 68 VFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
E + +IA+D G+ S + F+R F+R FD+TPS +R
Sbjct 67 R-TTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYR 104
>Q48413 Transcriptional activator RamA [Klebsiella pneumoniae]
Length=113
Score = 60.8 bits (146), Expect = 5e-15
Identities = 33/108 (31%), Positives = 59/108 (55%), Gaps = 1/108 (1%)
Query 1 MTAYDLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRL 60
MT + + ++I +L + L + ++ AG S++H R+F + G ++ +Y + +L
Sbjct 1 MTISAQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKL 60
Query 61 KRASFQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVE 108
A+ L + +V +I L GFDS + F R F R+F+Q P A+R E
Sbjct 61 LLAARDLR-DTDQRVYDICLKYGFDSQQTFTRVFTRTFNQPPGAYRKE 107
>P55922 Transcriptional activator RamA [Enterobacter cloacae]
Length=113
Score = 60.8 bits (146), Expect = 5e-15
Identities = 34/108 (31%), Positives = 59/108 (55%), Gaps = 1/108 (1%)
Query 1 MTAYDLKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRL 60
MT + + ++I +L + L ++ ++ AG S++H R+F + G ++ +Y + +L
Sbjct 1 MTISAQVIDTIVEWIDDNLHQPLRIEDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKL 60
Query 61 KRASFQLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVE 108
A+ L E +V EI L GF+S + F R F R+F Q P A+R E
Sbjct 61 LLAARDLRESDE-RVYEICLRYGFESQQTFTRIFTRTFHQPPGAYRKE 107
>P0A9E2 Regulatory protein SoxS [Escherichia coli (strain K12)]
Length=107
Score = 59.7 bits (143), Expect = 1e-14
Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQLVFKPEV 73
+I +H+D+ L++ +++ +G S+++ R+F + Y + RL A+ +L E
Sbjct 13 WIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELR-TTER 71
Query 74 KVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
+ +IA+D G+ S + F+R F+R FD+TPS +R
Sbjct 72 PIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYR 104
>P0A2S4 Multiple antibiotic resistance protein MarA [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=127
Score = 57.4 bits (137), Expect = 1e-13
Identities = 32/118 (27%), Positives = 62/118 (53%), Gaps = 5/118 (4%)
Query 6 LKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASF 65
+ + + D+I+ +L+ LSL+++SE +G S++H R+F G ++ +Y + ++ +
Sbjct 9 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQ 68
Query 66 QLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWHRKFVYFTP 123
+L E ++ +A GF+S + R FK FD P +R+ N H + Y P
Sbjct 69 KLKESNE-PILYLAERYGFESQQTLTRTFKNYFDVPPHKYRI----TNMHGESRYMLP 121
>P0A2S6 Multiple antibiotic resistance protein MarA [Salmonella
enteritidis]
Length=127
Score = 57.4 bits (137), Expect = 1e-13
Identities = 32/118 (27%), Positives = 62/118 (53%), Gaps = 5/118 (4%)
Query 6 LKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASF 65
+ + + D+I+ +L+ LSL+++SE +G S++H R+F G ++ +Y + ++ +
Sbjct 9 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQ 68
Query 66 QLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWHRKFVYFTP 123
+L E ++ +A GF+S + R FK FD P +R+ N H + Y P
Sbjct 69 KLKESNE-PILYLAERYGFESQQTLTRTFKNYFDVPPHKYRI----TNMHGESRYMLP 121
>Q51872 Probable transcriptional regulator LumQ [Photobacterium
leiognathi]
Length=248
Score = 58.9 bits (141), Expect = 2e-13
Identities = 30/101 (30%), Positives = 61/101 (60%), Gaps = 1/101 (1%)
Query 6 LKLKCVCDYIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASF 65
L + + +YI+QHL + +S+ +LS VA L++ F+ +F + +G+ +Y RL A
Sbjct 145 LNMVLIDNYIEQHLQKKISVAELSSVAFLAQSQFYALFKSQMGITPHQYVLRKRLDLAK- 203
Query 66 QLVFKPEVKVIEIALDAGFDSPEAFARAFKRSFDQTPSAFR 106
QL+ + + + ++A GF S +F++AF+R + +P+ ++
Sbjct 204 QLIAERQKPLSQVAQLCGFSSQSSFSQAFRRLYGMSPTRYQ 244
>P43463 HTH-type transcriptional activator AarP [Providencia stuartii]
Length=135
Score = 55.8 bits (133), Expect = 5e-13
Identities = 31/100 (31%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query 14 YIQQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQLVFKPEV 73
+I+ +L LSL +++ +G +++H R+F +GM + +Y + R+ A+ +L +
Sbjct 27 WIEGNLTNRLSLDDIAQHSGYTKWHLQRVFRKIVGMPLGEYIRRRRICEAAKELQ-TTNL 85
Query 74 KVIEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQN 113
+VI+IAL FDS ++FA+ FK +PS +R+ N
Sbjct 86 QVIDIALKYQFDSQQSFAKRFKAYLGISPSLYRLSDTGYN 125
>Q52620 Regulatory protein PqrA [Proteus vulgaris]
Length=122
Score = 55.5 bits (132), Expect = 6e-13
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query 16 QQHLDETLSLQQLSEVAGLSRFHFHRIFYAHLGMNIMKYTQMLRLKRASFQLVFKPEVKV 75
Q +E + + ++ +G S++H RIF G + +Y + RL A+ L K ++ +
Sbjct 16 QLQRNEGIKIDTIANKSGYSKWHLQRIFKDFKGCTLGEYVRKRRLLEAAKSLQEK-DMSI 74
Query 76 IEIALDAGFDSPEAFARAFKRSFDQTPSAFRVEPNWQNWH 115
++IAL GF S F R FK+ F+ TP+ FR + H
Sbjct 75 LDIALMYGFSSQATFTRIFKKHFNTTPAKFRENGTMPDTH 114
Lambda K H a alpha
0.325 0.138 0.426 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1679780
Database: 6f2548bfe0278a87f4a86a78bec5ddb0.SwissProt.fasta
Posted date: May 20, 2024 3:00 AM
Number of letters in database: 8,324
Number of sequences in database: 24
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
